Wall clock time and date at job start Tue Mar 31 2020 13:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99676 * 2 1 4 4 H 1.48510 * 109.47035 * 239.99894 * 3 2 1 5 5 H 1.48507 * 109.47227 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47398 * 119.99773 * 3 2 1 7 7 C 1.37871 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99991 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.64035 * 298.31660 * 9 7 2 11 11 C 1.55161 * 110.71763 * 61.45459 * 9 7 2 12 12 C 1.54903 * 101.57878 * 153.86593 * 11 9 7 13 13 N 1.47425 * 104.83483 * 322.99156 * 12 11 9 14 14 C 1.34779 * 125.64926 * 204.09411 * 13 12 11 15 15 O 1.21273 * 120.00093 * 180.02562 * 14 13 12 16 16 C 1.50706 * 119.99767 * 0.02562 * 14 13 12 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 13 18 18 O 1.42903 * 109.46726 * 180.02562 * 17 16 14 19 19 C 1.35950 * 116.99607 * 180.02562 * 18 17 16 20 20 C 1.38706 * 120.03113 * 359.72787 * 19 18 17 21 21 C 1.38156 * 119.96912 * 179.74553 * 20 19 18 22 22 C 1.38458 * 120.02806 * 0.52460 * 21 20 19 23 23 F 1.35095 * 119.96966 * 179.74397 * 22 21 20 24 24 C 1.38455 * 120.05987 * 359.73030 * 22 21 20 25 25 C 1.38152 * 120.03229 * 0.02562 * 24 22 21 26 26 C 1.47023 * 108.70248 * 24.35766 * 13 12 11 27 27 H 0.96998 * 120.00071 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00095 * 61.68651 * 10 9 7 29 29 H 1.09007 * 111.00214 * 35.79096 * 11 9 7 30 30 H 1.08996 * 111.03469 * 271.95908 * 11 9 7 31 31 H 1.09004 * 110.36403 * 204.14962 * 12 11 9 32 32 H 1.09000 * 110.36803 * 81.83140 * 12 11 9 33 33 H 1.09001 * 109.46797 * 60.00350 * 16 14 13 34 34 H 1.08992 * 109.47518 * 300.00347 * 16 14 13 35 35 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 36 36 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 37 37 H 1.08001 * 120.01823 * 359.97160 * 20 19 18 38 38 H 1.07991 * 119.98354 * 180.23252 * 21 20 19 39 39 H 1.07999 * 119.98582 * 179.97438 * 24 22 21 40 40 H 1.08000 * 120.01406 * 180.02562 * 25 24 22 41 41 H 1.08996 * 109.88020 * 118.13190 * 26 13 12 42 42 H 1.09002 * 109.87767 * 239.29718 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4505 -2.6186 1.1770 11 6 0.3757 -2.6276 -1.2751 12 6 0.2713 -4.1656 -1.4269 13 7 1.5927 -4.6758 -1.0182 14 6 2.1326 -5.8510 -1.3976 15 8 3.2320 -6.1704 -0.9976 16 6 1.3702 -6.7680 -2.3190 17 6 2.2006 -8.0241 -2.5900 18 8 1.4778 -8.8934 -3.4641 19 6 2.0794 -10.0634 -3.8068 20 6 3.3412 -10.3650 -3.3162 21 6 3.9492 -11.5567 -3.6611 22 6 3.3039 -12.4449 -4.5048 23 9 3.9017 -13.6076 -4.8454 24 6 2.0466 -12.1428 -4.9995 25 6 1.4342 -10.9541 -4.6522 26 6 2.2212 -3.6933 -0.1231 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2276 -1.9345 1.2626 29 1 0.8730 -2.1827 -2.1371 30 1 -0.6072 -2.1824 -1.1210 31 1 0.0661 -4.4313 -2.4639 32 1 -0.5064 -4.5594 -0.7725 33 1 1.1704 -6.2542 -3.2593 34 1 0.4268 -7.0503 -1.8517 35 1 3.1442 -7.7422 -3.0571 36 1 2.3999 -8.5378 -1.6495 37 1 3.8468 -9.6702 -2.6619 38 1 4.9300 -11.7934 -3.2762 39 1 1.5446 -12.8363 -5.6578 40 1 0.4533 -10.7188 -5.0379 41 1 2.3891 -4.1392 0.8572 42 1 3.1676 -3.3578 -0.5472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:18 Heat of formation + Delta-G solvation = -161.318996 kcal Electronic energy + Delta-G solvation = -26237.440861 eV Core-core repulsion = 22096.464894 eV Total energy + Delta-G solvation = -4140.975966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83529 -41.37054 -40.87483 -39.10039 -38.21840 -36.11376 -34.20475 -33.33654 -32.20985 -31.35360 -30.26669 -29.86404 -27.30346 -25.56950 -24.08860 -23.57607 -22.80283 -21.51742 -20.24173 -19.46950 -19.11366 -18.47935 -17.84354 -17.60883 -17.50364 -16.92904 -16.79475 -16.53776 -16.25243 -16.03366 -15.65204 -15.27678 -15.25318 -14.77387 -14.58272 -14.29734 -13.97990 -13.85251 -13.69738 -13.63077 -13.31535 -13.24428 -13.10982 -12.74869 -12.71907 -12.64548 -12.42675 -12.28698 -11.97436 -11.79813 -11.71064 -11.27747 -11.00525 -10.62560 -10.20135 -10.14367 -9.65680 -9.14671 -8.24595 -6.38639 0.14538 0.17575 1.42587 1.44741 1.51065 1.54294 1.65271 2.34278 2.42959 2.54912 3.00948 3.30928 3.50019 3.66074 3.77838 3.82461 3.89771 3.94156 4.01638 4.10506 4.27390 4.30476 4.35645 4.44408 4.55451 4.58809 4.68610 4.71703 4.77847 4.90525 4.92559 5.11508 5.13288 5.17950 5.22217 5.23149 5.47219 5.55446 5.68008 5.76975 6.08295 6.27550 6.55383 6.65199 7.05173 7.31301 7.40741 8.80959 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037514 B = 0.001979 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.216794 B =14144.897844 C =14399.847130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.039 3.961 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.564 4.564 8 H 0.050 0.950 9 C 0.233 3.767 10 O -0.593 6.593 11 C -0.127 4.127 12 C 0.101 3.899 13 N -0.609 5.609 14 C 0.524 3.476 15 O -0.592 6.592 16 C -0.122 4.122 17 C 0.079 3.921 18 O -0.314 6.314 19 C 0.110 3.890 20 C -0.189 4.189 21 C -0.117 4.117 22 C 0.040 3.960 23 F -0.149 7.149 24 C -0.109 4.109 25 C -0.124 4.124 26 C 0.129 3.871 27 H 0.272 0.728 28 H 0.380 0.620 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.044 0.956 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -18.781 -10.783 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.163 4.163 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.602 4.602 8 H 0.068 0.932 9 C 0.193 3.807 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.020 4.020 13 N -0.342 5.342 14 C 0.315 3.685 15 O -0.474 6.474 16 C -0.162 4.162 17 C 0.004 3.996 18 O -0.228 6.228 19 C 0.065 3.935 20 C -0.208 4.208 21 C -0.135 4.135 22 C 0.020 3.980 23 F -0.128 7.128 24 C -0.128 4.128 25 C -0.143 4.143 26 C 0.006 3.994 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.179 0.821 41 H 0.062 0.938 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.847 -19.373 -10.567 22.084 hybrid contribution 0.683 1.541 0.410 1.735 sum -0.164 -17.831 -10.157 20.522 Atomic orbital electron populations 1.69732 1.06418 1.28441 1.49636 1.25552 0.95888 1.01800 0.93092 0.85644 0.78541 0.79086 0.78521 1.19894 1.20280 1.20452 1.21693 0.93372 0.91869 1.53246 0.93173 1.19619 0.87591 0.90371 0.83093 1.86118 1.51873 1.56312 1.45893 1.23083 1.01488 0.93066 0.98893 1.22605 0.83333 0.94706 1.01367 1.48671 1.20098 1.18187 1.47206 1.20590 0.85806 0.80715 0.81404 1.90666 1.22676 1.74950 1.59095 1.21367 1.00209 0.93536 1.01042 1.22377 0.94646 0.89249 0.93336 1.85973 1.45244 1.27822 1.63769 1.19278 0.92032 0.86567 0.95658 1.21342 0.95691 0.99123 1.04594 1.21137 1.01452 0.93279 0.97661 1.17823 0.94116 0.84070 1.01950 1.91470 1.83696 1.46393 1.91251 1.21221 0.93280 0.97722 1.00540 1.20552 1.02147 0.92507 0.99065 1.21780 0.96316 0.88877 0.92438 0.91880 0.77031 0.92411 0.90158 0.87617 0.90602 0.85511 0.85677 0.91291 0.91344 0.84005 0.83264 0.81684 0.82105 0.93779 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.70 10.67 21.45 0.23 -44.47 16 2 C 0.04 1.92 5.28 84.65 0.45 2.37 16 3 Si 0.96 40.53 29.54 68.60 2.03 42.56 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.56 -29.11 8.22 25.60 0.21 -28.90 16 8 H 0.05 2.64 7.58 -2.91 -0.02 2.62 16 9 C 0.23 10.90 0.85 -10.35 -0.01 10.89 16 10 O -0.59 -28.97 13.07 -148.98 -1.95 -30.92 16 11 C -0.13 -5.06 5.47 31.99 0.17 -4.88 16 12 C 0.10 3.13 6.68 86.85 0.58 3.71 16 13 N -0.61 -21.73 3.33 -811.79 -2.70 -24.43 16 14 C 0.52 17.02 7.85 87.66 0.69 17.71 16 15 O -0.59 -23.41 16.31 -3.01 -0.05 -23.46 16 16 C -0.12 -2.61 5.08 29.85 0.15 -2.46 16 17 C 0.08 1.69 4.03 71.98 0.29 1.98 16 18 O -0.31 -6.36 10.14 -92.98 -0.94 -7.30 16 19 C 0.11 2.12 6.69 22.49 0.15 2.27 16 20 C -0.19 -3.57 9.04 22.36 0.20 -3.37 16 21 C -0.12 -2.06 10.02 22.30 0.22 -1.84 16 22 C 0.04 0.71 7.30 22.37 0.16 0.87 16 23 F -0.15 -2.90 17.27 44.97 0.78 -2.12 16 24 C -0.11 -1.58 10.02 22.30 0.22 -1.36 16 25 C -0.12 -1.91 9.99 22.36 0.22 -1.69 16 26 C 0.13 5.66 6.23 86.73 0.54 6.20 16 27 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 28 H 0.38 18.54 7.46 -74.06 -0.55 17.99 16 29 H 0.06 2.39 8.04 -2.38 -0.02 2.38 16 30 H 0.08 3.34 7.54 -2.39 -0.02 3.33 16 31 H 0.11 2.40 7.48 -2.39 -0.02 2.38 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.13 2.19 7.85 -2.39 -0.02 2.17 16 34 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 1.53 7.61 -2.39 -0.02 1.51 16 36 H 0.07 1.53 7.63 -2.39 -0.02 1.51 16 37 H 0.14 2.61 6.30 -2.91 -0.02 2.59 16 38 H 0.15 2.14 8.06 -2.92 -0.02 2.12 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.04 2.05 8.07 -2.39 -0.02 2.03 16 42 H 0.06 2.72 7.66 -2.39 -0.02 2.71 16 Total: -1.00 -60.41 356.33 2.15 -58.25 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.50 Total: 30.39 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.26 Total: 1.50 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -2.47 Total: -68.90 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -2.94 Total: -61.68 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -60.41 2.15 -58.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.065 kcal (2) G-P(sol) polarization free energy of solvation -60.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds