Wall clock time and date at job start Tue Mar 31 2020 13:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 O 1.42901 * 109.46898 * 179.97438 * 17 16 14 19 19 C 1.35954 * 116.99913 * 179.97438 * 18 17 16 20 20 C 1.38655 * 120.06544 * 0.02562 * 19 18 17 21 21 C 1.38185 * 119.97481 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.09125 * 0.02562 * 21 20 19 23 23 C 1.38259 * 120.12442 * 0.02562 * 22 21 20 24 24 C 1.38330 * 120.03014 * 359.70217 * 23 22 21 25 25 F 1.35103 * 120.04323 * 180.28036 * 24 23 22 26 26 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 27 27 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 28 28 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 29 29 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 30 30 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 31 31 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 32 32 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 33 33 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 34 34 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 35 35 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 36 36 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 37 37 H 1.08007 * 120.01319 * 359.95034 * 20 19 18 38 38 H 1.07991 * 119.95543 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.93183 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.98038 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.36865 * 217.03325 * 26 13 12 42 42 H 1.08994 * 110.46657 * 94.75473 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 8 0.4761 -9.5282 1.3436 19 6 0.7643 -10.8350 1.1036 20 6 1.8157 -11.1718 0.2648 21 6 2.1073 -12.5006 0.0226 22 6 1.3515 -13.4953 0.6151 23 6 0.3015 -13.1640 1.4513 24 6 0.0087 -11.8354 1.7018 25 9 -1.0137 -11.5114 2.5233 26 6 2.2259 -3.7031 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 -0.2788 -1.8355 -1.1497 29 1 1.0755 -2.3016 2.1726 30 1 -0.4922 -2.2572 1.3011 31 1 -0.5769 -4.5759 1.0886 32 1 0.5412 -4.5578 2.4790 33 1 0.8963 -7.0283 2.1656 34 1 -0.2106 -7.0175 0.7717 35 1 1.2261 -8.6758 -0.3828 36 1 2.3333 -8.6871 1.0108 37 1 2.4065 -10.3958 -0.1993 38 1 2.9260 -12.7626 -0.6310 39 1 1.5814 -14.5331 0.4237 40 1 -0.2876 -13.9428 1.9125 41 1 2.5186 -3.9536 -1.0209 42 1 3.1062 -3.4787 0.6010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:22 Heat of formation + Delta-G solvation = -142.952535 kcal Electronic energy + Delta-G solvation = -26536.250802 eV Core-core repulsion = 22396.071266 eV Total energy + Delta-G solvation = -4140.179537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.95720 -40.32770 -39.53956 -37.81510 -37.24722 -34.39060 -32.29165 -32.18815 -30.98607 -30.10340 -29.53739 -28.33726 -25.74463 -24.38319 -22.83747 -22.55114 -21.82385 -19.78518 -19.04887 -18.47735 -17.46936 -17.25028 -16.81616 -16.68072 -16.41998 -15.71921 -15.26066 -15.14309 -15.02957 -14.86960 -14.65153 -14.12422 -14.08829 -13.80045 -13.19012 -13.04252 -12.89885 -12.38954 -12.27409 -12.15037 -11.97892 -11.77219 -11.73007 -11.41546 -11.37913 -11.24962 -10.95454 -10.94068 -10.66241 -10.52380 -10.10887 -9.59563 -9.46461 -9.25406 -8.73525 -8.47002 -8.28223 -8.09972 -6.35486 -4.43400 0.81878 0.96363 2.64375 2.91345 3.16457 3.24126 3.26921 3.28268 3.59675 3.98662 4.21692 4.41201 4.51076 4.70591 4.83479 4.86960 4.87669 4.91207 4.97197 5.18417 5.31015 5.47112 5.58367 5.62810 5.70305 5.71728 5.74646 5.80647 5.88139 5.95616 6.07878 6.20530 6.35918 6.36712 6.56321 6.80419 6.87633 7.05472 7.23602 7.25934 7.67974 7.91834 8.00951 8.46146 8.59134 9.25731 9.41564 10.72281 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.002150 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.320968 B =13019.180375 C =13484.368949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.140 4.140 12 C 0.097 3.903 13 N -0.603 5.603 14 C 0.529 3.471 15 O -0.559 6.559 16 C -0.135 4.135 17 C 0.076 3.924 18 O -0.309 6.309 19 C 0.105 3.895 20 C -0.182 4.182 21 C -0.089 4.089 22 C -0.134 4.134 23 C -0.118 4.118 24 C 0.065 3.935 25 F -0.133 7.133 26 C 0.119 3.881 27 H 0.270 0.730 28 H 0.386 0.614 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -20.812 4.016 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.178 4.178 12 C -0.025 4.025 13 N -0.334 5.334 14 C 0.317 3.683 15 O -0.439 6.439 16 C -0.175 4.175 17 C 0.001 3.999 18 O -0.223 6.223 19 C 0.058 3.942 20 C -0.201 4.201 21 C -0.107 4.107 22 C -0.152 4.152 23 C -0.137 4.137 24 C 0.045 3.955 25 F -0.112 7.112 26 C -0.002 4.002 27 H 0.080 0.920 28 H 0.238 0.762 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.269 -21.365 3.668 21.679 hybrid contribution -0.050 1.601 0.269 1.625 sum 0.219 -19.763 3.936 20.153 Atomic orbital electron populations 1.69554 1.06010 1.27838 1.50325 1.24999 0.95035 0.99624 0.93380 0.86385 0.79774 0.82250 0.78397 1.20358 1.21013 1.19685 1.21468 0.93796 0.90151 1.51998 0.91599 1.19587 0.86046 0.90799 0.82791 1.86098 1.50976 1.52818 1.49612 1.23215 1.03181 0.89964 1.01472 1.22221 0.90098 0.97294 0.92932 1.48566 1.33053 1.04813 1.47001 1.19698 0.84675 0.82134 0.81792 1.90675 1.33259 1.80147 1.39793 1.21427 1.01601 0.91482 1.03029 1.22543 0.94048 0.85708 0.97635 1.86054 1.56284 1.11957 1.68010 1.19020 0.95019 0.83864 0.96283 1.21340 0.98787 0.98463 1.01483 1.21062 0.99201 0.91808 0.98612 1.20934 0.95878 0.99984 0.98410 1.21016 0.99191 0.93554 0.99960 1.17027 0.89867 0.91811 0.96824 1.91506 1.56438 1.93413 1.69815 1.22421 0.94532 0.85171 0.98118 0.92008 0.76165 0.91250 0.89755 0.92128 0.92591 0.87949 0.87809 0.90698 0.90776 0.83985 0.84970 0.84907 0.84160 0.90978 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.60 10.79 55.43 0.60 -22.01 16 2 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 3 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -13.58 8.25 -34.44 -0.28 -13.86 16 8 H 0.07 1.66 7.77 -52.49 -0.41 1.25 16 9 C 0.25 5.83 0.89 -89.62 -0.08 5.75 16 10 O -0.58 -14.69 13.18 -35.23 -0.46 -15.16 16 11 C -0.14 -2.88 5.64 -24.90 -0.14 -3.02 16 12 C 0.10 1.67 6.49 -3.06 -0.02 1.65 16 13 N -0.60 -11.43 3.33 -170.52 -0.57 -11.99 16 14 C 0.53 9.36 7.85 -10.99 -0.09 9.28 16 15 O -0.56 -11.40 16.24 5.56 0.09 -11.31 16 16 C -0.14 -1.81 5.26 -27.88 -0.15 -1.95 16 17 C 0.08 0.96 4.03 37.16 0.15 1.11 16 18 O -0.31 -4.10 10.00 -19.60 -0.20 -4.30 16 19 C 0.10 1.27 6.69 -39.18 -0.26 1.00 16 20 C -0.18 -1.84 9.04 -39.45 -0.36 -2.20 16 21 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 22 C -0.13 -0.98 10.04 -39.56 -0.40 -1.38 16 23 C -0.12 -1.02 10.02 -39.54 -0.40 -1.42 16 24 C 0.06 0.74 7.31 -39.30 -0.29 0.46 16 25 F -0.13 -1.72 17.11 2.25 0.04 -1.68 16 26 C 0.12 2.58 6.08 -2.53 -0.02 2.56 16 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.39 9.80 6.93 45.56 0.32 10.12 16 29 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 30 H 0.08 1.82 7.85 -51.93 -0.41 1.42 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 0.95 7.62 -51.93 -0.40 0.56 16 36 H 0.07 0.91 7.62 -51.93 -0.40 0.52 16 37 H 0.14 1.35 6.30 -52.48 -0.33 1.02 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 42 H 0.07 1.51 8.01 -51.93 -0.42 1.10 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -28.82 357.64 -7.91 -36.73 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.97 Total: 10.99 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.81 Total: -1.40 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.03 Total: -34.00 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.57 Total: -30.77 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.82 -7.91 -36.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.222 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds