Wall clock time and date at job start Tue Mar 31 2020 13:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.88504 * 297.29223 * 9 7 2 11 11 C 1.55157 * 111.00344 * 61.17254 * 9 7 2 12 12 C 1.54322 * 102.93912 * 153.57728 * 11 9 7 13 13 N 1.47022 * 107.27482 * 337.80443 * 12 11 9 14 14 C 1.34775 * 125.65138 * 178.98361 * 13 12 11 15 15 O 1.21280 * 120.00143 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00178 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 O 1.42900 * 109.47117 * 180.02562 * 17 16 14 19 19 C 1.35956 * 116.99807 * 180.02562 * 18 17 16 20 20 C 1.38662 * 120.06491 * 359.72054 * 19 18 17 21 21 C 1.38183 * 119.96961 * 179.75049 * 20 19 18 22 22 C 1.38268 * 120.09361 * 0.52920 * 21 20 19 23 23 C 1.38259 * 120.12412 * 359.74578 * 22 21 20 24 24 C 1.38328 * 120.03126 * 359.97438 * 23 22 21 25 25 F 1.35106 * 120.04511 * 180.02562 * 24 23 22 26 26 C 1.47424 * 108.69909 * 358.94436 * 13 12 11 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99783 * 59.29596 * 10 9 7 29 29 H 1.08995 * 110.72243 * 271.93651 * 11 9 7 30 30 H 1.08996 * 110.71924 * 35.21744 * 11 9 7 31 31 H 1.09003 * 109.88512 * 97.22334 * 12 11 9 32 32 H 1.09001 * 109.88623 * 218.23719 * 12 11 9 33 33 H 1.09005 * 109.47278 * 300.00194 * 16 14 13 34 34 H 1.09003 * 109.46815 * 59.99497 * 16 14 13 35 35 H 1.08999 * 109.47124 * 299.99743 * 17 16 14 36 36 H 1.09003 * 109.47348 * 60.00099 * 17 16 14 37 37 H 1.07998 * 120.01330 * 0.02562 * 20 19 18 38 38 H 1.07990 * 119.95192 * 180.27587 * 21 20 19 39 39 H 1.07994 * 119.93465 * 179.77049 * 22 21 20 40 40 H 1.08003 * 119.98057 * 180.02562 * 23 22 21 41 41 H 1.09007 * 110.36818 * 265.28667 * 26 13 12 42 42 H 1.09006 * 110.37032 * 142.96345 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4609 -2.6367 1.1775 11 6 0.3735 -2.6290 -1.2784 12 6 0.2582 -4.1566 -1.4644 13 7 1.3940 -4.7691 -0.7599 14 6 1.6415 -6.0908 -0.6687 15 8 2.6133 -6.4852 -0.0597 16 6 0.7107 -7.0787 -1.3234 17 6 1.2163 -8.5004 -1.0709 18 8 0.3339 -9.4371 -1.6923 19 6 0.6415 -10.7550 -1.5619 20 6 1.7719 -11.1379 -0.8560 21 6 2.0800 -12.4781 -0.7204 22 6 1.2685 -13.4378 -1.2970 23 6 0.1436 -13.0601 -2.0065 24 6 -0.1728 -11.7202 -2.1406 25 9 -1.2723 -11.3508 -2.8334 26 6 2.2179 -3.6980 -0.1706 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1933 -1.9347 1.2973 29 1 -0.6088 -2.1850 -1.1167 30 1 0.8679 -2.1724 -2.1357 31 1 -0.6790 -4.5125 -1.0364 32 1 0.2993 -4.4051 -2.5249 33 1 -0.2895 -6.9685 -0.9041 34 1 0.6774 -6.8903 -2.3965 35 1 2.2162 -8.6103 -1.4906 36 1 1.2498 -8.6890 0.0021 37 1 2.4089 -10.3892 -0.4087 38 1 2.9579 -12.7762 -0.1668 39 1 1.5137 -14.4843 -1.1925 40 1 -0.4889 -13.8117 -2.4555 41 1 3.0360 -3.4358 -0.8417 42 1 2.6066 -4.0084 0.7994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843514.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:24 Heat of formation + Delta-G solvation = -160.960498 kcal Electronic energy + Delta-G solvation = -26541.843356 eV Core-core repulsion = 22400.882935 eV Total energy + Delta-G solvation = -4140.960421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83031 -41.35552 -40.82979 -39.09820 -38.41031 -36.10865 -34.21700 -33.39820 -31.68382 -31.49952 -30.54304 -29.93991 -27.32925 -25.63527 -23.94874 -23.47945 -22.87720 -21.56384 -20.29641 -19.57195 -19.09237 -18.34800 -17.75765 -17.67812 -17.57295 -16.96446 -16.83065 -16.57291 -16.16900 -16.04856 -15.72229 -15.40878 -15.26089 -14.98968 -14.76088 -14.26534 -13.88567 -13.84940 -13.62821 -13.51475 -13.25074 -13.04366 -12.99765 -12.87954 -12.64699 -12.53981 -12.47603 -12.28528 -12.05519 -11.91608 -11.82243 -11.28127 -11.03881 -10.64428 -10.16328 -9.95832 -9.62973 -9.25519 -8.24296 -6.39447 0.11602 0.24840 1.43521 1.45358 1.50333 1.52774 1.60321 2.30196 2.41559 2.59565 3.00696 3.21377 3.47190 3.64657 3.79224 3.83256 3.85878 3.96338 4.03561 4.17475 4.30545 4.32739 4.35034 4.36775 4.48918 4.58309 4.64038 4.67799 4.73443 4.88113 4.97855 5.09135 5.17004 5.23623 5.25551 5.42656 5.45213 5.54945 5.68383 5.77134 6.06735 6.20818 6.54695 6.64634 7.02893 7.30607 7.39008 8.81038 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.036337 B = 0.002155 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.379692 B =12989.454191 C =13464.212868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.233 3.767 10 O -0.593 6.593 11 C -0.127 4.127 12 C 0.102 3.898 13 N -0.608 5.608 14 C 0.527 3.473 15 O -0.590 6.590 16 C -0.124 4.124 17 C 0.083 3.917 18 O -0.324 6.324 19 C 0.076 3.924 20 C -0.192 4.192 21 C -0.086 4.086 22 C -0.123 4.123 23 C -0.115 4.115 24 C 0.036 3.964 25 F -0.149 7.149 26 C 0.125 3.875 27 H 0.271 0.729 28 H 0.378 0.622 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.075 0.925 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -22.483 -5.708 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.601 4.601 8 H 0.073 0.927 9 C 0.193 3.807 10 O -0.402 6.402 11 C -0.166 4.166 12 C -0.020 4.020 13 N -0.339 5.339 14 C 0.317 3.683 15 O -0.472 6.472 16 C -0.163 4.163 17 C 0.007 3.993 18 O -0.238 6.238 19 C 0.030 3.970 20 C -0.211 4.211 21 C -0.104 4.104 22 C -0.141 4.141 23 C -0.133 4.133 24 C 0.017 3.983 25 F -0.127 7.127 26 C 0.003 3.997 27 H 0.081 0.919 28 H 0.228 0.772 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.187 0.813 40 H 0.182 0.818 41 H 0.093 0.907 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.218 -23.060 -5.458 23.698 hybrid contribution -0.021 2.093 0.099 2.096 sum -0.239 -20.967 -5.359 21.642 Atomic orbital electron populations 1.69773 1.06586 1.28433 1.49624 1.25600 0.95851 1.01969 0.93060 0.85603 0.78467 0.78854 0.78626 1.19606 1.20522 1.20416 1.21637 0.93597 0.91597 1.53267 0.92666 1.19794 0.87639 0.90687 0.82625 1.86121 1.54256 1.53685 1.46136 1.22956 1.01755 0.92498 0.99357 1.22281 0.88412 0.94174 0.97096 1.48628 1.27636 1.04947 1.52738 1.20414 0.85872 0.81829 0.80174 1.90656 1.32097 1.78859 1.45611 1.21354 1.00002 0.90597 1.04376 1.22392 0.92663 0.86283 0.97923 1.85995 1.51788 1.13122 1.72908 1.19313 0.95745 0.83260 0.98671 1.21481 0.97197 0.99387 1.03019 1.21463 1.00203 0.91068 0.97659 1.21388 0.93627 1.01755 0.97340 1.21379 0.99440 0.92349 1.00162 1.17447 0.86875 0.92914 1.01103 1.91457 1.51331 1.92528 1.77432 1.22158 0.93955 0.86566 0.97063 0.91947 0.77250 0.90624 0.91872 0.90664 0.88986 0.86490 0.85713 0.90790 0.91282 0.84082 0.82258 0.81332 0.81849 0.90699 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.44 10.73 21.45 0.23 -45.21 16 2 C 0.04 1.85 5.27 84.66 0.45 2.29 16 3 Si 0.96 40.50 29.54 68.60 2.03 42.53 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.56 -28.97 8.27 25.60 0.21 -28.76 16 8 H 0.06 2.86 7.79 -2.91 -0.02 2.84 16 9 C 0.23 11.02 0.88 -10.15 -0.01 11.01 16 10 O -0.59 -29.94 13.18 -148.98 -1.96 -31.91 16 11 C -0.13 -5.20 5.38 31.78 0.17 -5.03 16 12 C 0.10 3.34 6.49 86.73 0.56 3.90 16 13 N -0.61 -22.58 3.33 -811.79 -2.70 -25.28 16 14 C 0.53 18.25 7.85 87.66 0.69 18.94 16 15 O -0.59 -24.20 16.24 -3.03 -0.05 -24.25 16 16 C -0.12 -3.11 5.26 29.85 0.16 -2.95 16 17 C 0.08 2.05 4.03 71.98 0.29 2.34 16 18 O -0.32 -8.50 10.00 -93.05 -0.93 -9.43 16 19 C 0.08 1.81 6.69 22.53 0.15 1.96 16 20 C -0.19 -3.70 9.04 22.36 0.20 -3.50 16 21 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 22 C -0.12 -1.39 10.04 22.28 0.22 -1.17 16 23 C -0.11 -1.72 10.02 22.30 0.22 -1.49 16 24 C 0.04 0.81 7.31 22.45 0.16 0.98 16 25 F -0.15 -3.85 17.11 44.97 0.77 -3.08 16 26 C 0.13 5.51 6.08 86.85 0.53 6.04 16 27 H 0.27 13.03 8.31 -92.70 -0.77 12.26 16 28 H 0.38 19.11 7.51 -74.05 -0.56 18.56 16 29 H 0.08 3.27 7.54 -2.39 -0.02 3.25 16 30 H 0.06 2.62 8.03 -2.39 -0.02 2.60 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 1.80 7.61 -2.39 -0.02 1.78 16 36 H 0.07 1.76 7.63 -2.39 -0.02 1.74 16 37 H 0.14 2.64 6.30 -2.91 -0.02 2.62 16 38 H 0.16 1.23 8.06 -2.92 -0.02 1.20 16 39 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.07 3.21 8.03 -2.38 -0.02 3.19 16 42 H 0.05 2.31 8.04 -2.38 -0.02 2.29 16 Total: -1.00 -63.14 357.63 2.11 -61.03 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.49 Total: 31.97 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 4.23 Total: 3.63 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -2.47 Total: -70.50 kcal Atomic # 8 Polarization: -62.64 SS G_CDS: -2.94 Total: -65.59 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -63.14 2.11 -61.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843514.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.930 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds