Wall clock time and date at job start Tue Mar 31 2020 14:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38265 * 119.94686 * 2 1 4 4 C 1.38260 * 120.12140 * 179.97438 * 3 2 1 5 5 C 1.38329 * 120.02910 * 359.97438 * 4 3 2 6 6 F 1.35100 * 120.04343 * 179.97438 * 5 4 3 7 7 C 1.38901 * 119.90932 * 0.02562 * 5 4 3 8 8 O 1.35959 * 120.06705 * 179.97438 * 7 5 4 9 9 C 1.42895 * 116.99961 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.46889 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00169 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00229 * 180.02562 * 10 9 8 13 13 C 1.47026 * 125.64865 * 0.02639 * 12 10 9 14 14 C 1.54322 * 107.27281 * 181.02188 * 13 12 10 15 15 C 1.55148 * 102.94279 * 22.19168 * 14 13 12 16 16 O 1.42905 * 111.00874 * 82.61174 * 15 14 13 17 17 C 1.50704 * 111.00426 * 206.42544 * 15 14 13 18 18 H 1.07999 * 119.99860 * 359.97438 * 17 15 14 19 19 C 1.37882 * 119.99900 * 180.02562 * 17 15 14 20 20 N 1.31511 * 120.00187 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99715 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47079 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47329 * 119.99798 * 21 19 17 24 24 H 1.48505 * 109.47085 * 239.99736 * 21 19 17 25 25 C 1.47423 * 125.65283 * 179.71345 * 12 10 9 26 26 C 1.38170 * 119.95405 * 179.72756 * 2 1 3 27 27 H 1.08999 * 109.47015 * 90.00068 * 1 2 3 28 28 H 1.09000 * 109.46646 * 209.99220 * 1 2 3 29 29 H 1.09000 * 109.47248 * 329.99938 * 1 2 3 30 30 H 1.08000 * 119.94193 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.98212 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47578 * 299.99790 * 9 8 7 33 33 H 1.09001 * 109.47714 * 59.99965 * 9 8 7 34 34 H 1.09000 * 109.88036 * 300.43933 * 13 12 10 35 35 H 1.08997 * 109.88335 * 61.59894 * 13 12 10 36 36 H 1.09007 * 110.71932 * 140.55440 * 14 13 12 37 37 H 1.08998 * 110.71778 * 263.64745 * 14 13 12 38 38 H 0.96702 * 114.00316 * 180.02562 * 16 15 14 39 39 H 0.96994 * 120.00038 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.36848 * 274.74833 * 25 12 10 41 41 H 1.09000 * 110.36273 * 37.06891 * 25 12 10 42 42 H 1.08003 * 120.01542 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5799 1.2023 0.0005 5 6 4.2758 0.0068 0.0016 6 9 5.6268 0.0105 0.0016 7 6 3.5836 -1.1975 0.0016 8 8 4.2644 -2.3744 0.0021 9 6 3.4871 -3.5734 0.0027 10 6 4.4061 -4.7678 0.0026 11 8 5.6083 -4.6079 0.0016 12 7 3.8920 -6.0137 0.0025 13 6 2.4608 -6.3501 0.0019 14 6 2.3518 -7.8892 0.0283 15 6 3.7213 -8.3245 0.6133 16 8 3.7168 -8.2472 2.0402 17 6 4.0898 -9.7110 0.1516 18 1 3.4251 -10.2572 -0.5012 19 6 5.2750 -10.2825 0.5636 20 7 6.0842 -9.6176 1.3589 21 14 5.7314 -12.0013 -0.0081 22 1 4.6598 -12.5306 -0.8895 23 1 7.0108 -11.9495 -0.7601 24 1 5.8860 -12.8905 1.1712 25 6 4.6716 -7.2649 -0.0036 26 6 2.1970 -1.1971 0.0057 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8901 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.6555 2.1323 0.0004 31 1 4.1167 2.1394 0.0001 32 1 2.8583 -3.5985 0.8926 33 1 2.8582 -3.5993 -0.8873 34 1 1.9808 -5.9293 0.8855 35 1 1.9887 -5.9604 -0.8999 36 1 1.5363 -8.2071 0.6781 37 1 2.2166 -8.2836 -0.9788 38 1 4.5520 -8.5094 2.4511 39 1 6.9181 -10.0195 1.6484 40 1 4.9393 -7.5401 -1.0238 41 1 5.5671 -7.1568 0.6084 42 1 1.6564 -2.1322 0.0106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:14 Heat of formation + Delta-G solvation = -139.202764 kcal Electronic energy + Delta-G solvation = -27066.775762 eV Core-core repulsion = 22926.758827 eV Total energy + Delta-G solvation = -4140.016935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.80319 -40.44369 -39.34829 -37.92196 -36.94239 -34.37007 -32.66702 -32.20355 -30.78362 -30.32872 -28.83816 -27.68190 -26.73652 -24.98217 -23.18039 -22.37114 -21.86147 -19.75451 -18.97654 -18.35674 -17.32129 -17.14041 -17.03337 -16.58070 -16.25693 -15.53194 -15.30334 -14.91552 -14.67710 -14.65468 -14.49098 -14.29864 -13.91423 -13.48834 -13.24323 -13.19691 -13.07219 -12.91702 -12.27072 -12.11183 -12.05418 -11.80668 -11.68376 -11.54279 -11.39296 -11.13059 -11.09428 -10.87556 -10.68212 -10.51325 -10.24679 -9.53348 -9.39208 -9.09749 -8.74240 -8.46276 -8.33124 -7.90469 -6.34365 -4.44219 0.84978 1.01282 2.56825 2.95212 3.16750 3.25914 3.28006 3.28699 3.71685 4.09170 4.21894 4.37202 4.45554 4.68336 4.77246 4.87038 4.92599 4.95329 5.00251 5.16553 5.26230 5.28396 5.30947 5.50000 5.53993 5.71316 5.72618 5.79600 5.92501 5.93044 6.05116 6.17875 6.39869 6.41072 6.62936 6.75968 6.83916 7.09744 7.18299 7.26816 7.69023 7.92188 8.05091 8.55929 8.60906 9.25736 9.39516 10.73028 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025058 B = 0.002662 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.125145 B =10517.145518 C =11326.226530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.056 4.056 3 C -0.135 4.135 4 C -0.112 4.112 5 C 0.064 3.936 6 F -0.130 7.130 7 C 0.107 3.893 8 O -0.280 6.280 9 C 0.045 3.955 10 C 0.522 3.478 11 O -0.526 6.526 12 N -0.606 5.606 13 C 0.099 3.901 14 C -0.117 4.117 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.095 3.905 26 C -0.187 4.187 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.387 0.613 39 H 0.272 0.728 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.253 17.875 -3.072 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.153 4.153 4 C -0.131 4.131 5 C 0.044 3.956 6 F -0.108 7.108 7 C 0.059 3.941 8 O -0.191 6.191 9 C -0.033 4.033 10 C 0.308 3.692 11 O -0.402 6.402 12 N -0.340 5.340 13 C -0.024 4.024 14 C -0.155 4.155 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.026 4.026 26 C -0.206 4.206 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.240 0.760 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.735 18.172 -3.077 21.849 hybrid contribution 0.946 -1.146 -0.204 1.500 sum -10.789 17.026 -3.281 20.422 Atomic orbital electron populations 1.20822 0.90402 1.03233 1.02738 1.19765 0.96485 0.92203 0.97230 1.20784 0.92908 0.98000 1.03592 1.20994 0.94854 0.96256 1.01011 1.16999 0.77439 0.91698 1.09415 1.91530 1.27961 1.97172 1.94177 1.19116 0.91081 0.85604 0.98259 1.86255 1.33883 1.11055 1.87944 1.22601 0.94099 0.83113 1.03512 1.19414 0.88570 0.82758 0.78480 1.90744 1.14989 1.84998 1.49493 1.48647 1.08618 1.05472 1.71301 1.22099 0.81828 0.98529 0.99925 1.22623 0.99986 0.91491 1.01417 1.19630 0.88244 0.91695 0.79576 1.86055 1.42325 1.90708 1.20360 1.21521 1.05160 0.99972 1.31003 0.91330 1.25101 0.95624 0.98466 0.94116 1.69564 1.11912 1.37867 1.33972 0.86319 0.78479 0.83287 0.78647 1.19550 1.20719 1.20701 1.23419 0.97201 0.80710 1.01308 1.21083 0.91692 0.99692 1.08120 0.90701 0.91150 0.91121 0.84924 0.84034 0.89011 0.89164 0.92008 0.92510 0.90518 0.90297 0.76042 0.91818 0.91851 0.89797 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.06 -0.49 5.88 -104.63 -0.62 -1.10 16 3 C -0.13 -1.10 9.69 -39.56 -0.38 -1.49 16 4 C -0.11 -1.10 10.02 -39.54 -0.40 -1.50 16 5 C 0.06 0.86 7.31 -39.30 -0.29 0.58 16 6 F -0.13 -2.04 17.11 2.25 0.04 -2.00 16 7 C 0.11 1.47 6.69 -39.18 -0.26 1.21 16 8 O -0.28 -4.72 9.53 -39.52 -0.38 -5.10 16 9 C 0.05 0.66 4.41 36.01 0.16 0.82 16 10 C 0.52 10.41 7.93 -10.99 -0.09 10.33 16 11 O -0.53 -12.96 16.75 -14.36 -0.24 -13.20 16 12 N -0.61 -11.98 3.32 -170.38 -0.57 -12.55 16 13 C 0.10 1.58 6.48 -3.06 -0.02 1.56 16 14 C -0.12 -2.17 6.12 -24.90 -0.15 -2.32 16 15 C 0.25 5.83 0.89 -89.51 -0.08 5.75 16 16 O -0.58 -14.59 13.19 -35.23 -0.46 -15.06 16 17 C -0.54 -13.58 8.25 -34.44 -0.28 -13.86 16 18 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.89 -23.55 10.72 55.43 0.59 -22.96 16 21 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 C 0.09 2.22 5.64 -2.41 -0.01 2.20 16 26 C -0.19 -1.96 8.69 -39.45 -0.34 -2.30 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.09 1.12 7.65 -51.93 -0.40 0.72 16 33 H 0.09 1.03 7.67 -51.93 -0.40 0.64 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 37 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 38 H 0.39 10.13 6.93 45.56 0.32 10.44 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.06 1.51 8.03 -51.93 -0.42 1.09 16 41 H 0.08 2.24 7.64 -51.93 -0.40 1.85 16 42 H 0.14 1.18 6.30 -52.48 -0.33 0.85 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -31.55 358.00 -8.10 -39.65 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.96 Total: 9.58 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.50 Total: 1.27 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.03 Total: -35.51 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.08 Total: -33.36 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.55 -8.10 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.557 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds