Wall clock time and date at job start Tue Mar 31 2020 14:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38265 * 119.94686 * 2 1 4 4 C 1.38260 * 120.12140 * 179.97438 * 3 2 1 5 5 C 1.38329 * 120.02910 * 359.97438 * 4 3 2 6 6 F 1.35100 * 120.04343 * 179.97438 * 5 4 3 7 7 C 1.38901 * 119.90932 * 0.02562 * 5 4 3 8 8 O 1.35959 * 120.06705 * 179.97438 * 7 5 4 9 9 C 1.42895 * 116.99961 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.46889 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00169 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00229 * 180.02562 * 10 9 8 13 13 C 1.47026 * 125.64865 * 0.02639 * 12 10 9 14 14 C 1.54322 * 107.27281 * 181.02188 * 13 12 10 15 15 C 1.55148 * 102.94279 * 22.19168 * 14 13 12 16 16 O 1.42905 * 111.00874 * 82.61174 * 15 14 13 17 17 C 1.50704 * 111.00426 * 206.42544 * 15 14 13 18 18 H 1.07999 * 119.99860 * 359.97438 * 17 15 14 19 19 C 1.37882 * 119.99900 * 180.02562 * 17 15 14 20 20 N 1.31511 * 120.00187 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99715 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47079 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47329 * 119.99798 * 21 19 17 24 24 H 1.48505 * 109.47085 * 239.99736 * 21 19 17 25 25 C 1.47423 * 125.65283 * 179.71345 * 12 10 9 26 26 C 1.38170 * 119.95405 * 179.72756 * 2 1 3 27 27 H 1.08999 * 109.47015 * 90.00068 * 1 2 3 28 28 H 1.09000 * 109.46646 * 209.99220 * 1 2 3 29 29 H 1.09000 * 109.47248 * 329.99938 * 1 2 3 30 30 H 1.08000 * 119.94193 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.98212 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47578 * 299.99790 * 9 8 7 33 33 H 1.09001 * 109.47714 * 59.99965 * 9 8 7 34 34 H 1.09000 * 109.88036 * 300.43933 * 13 12 10 35 35 H 1.08997 * 109.88335 * 61.59894 * 13 12 10 36 36 H 1.09007 * 110.71932 * 140.55440 * 14 13 12 37 37 H 1.08998 * 110.71778 * 263.64745 * 14 13 12 38 38 H 0.96702 * 114.00316 * 180.02562 * 16 15 14 39 39 H 0.96994 * 120.00038 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.36848 * 274.74833 * 25 12 10 41 41 H 1.09000 * 110.36273 * 37.06891 * 25 12 10 42 42 H 1.08003 * 120.01542 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5799 1.2023 0.0005 5 6 4.2758 0.0068 0.0016 6 9 5.6268 0.0105 0.0016 7 6 3.5836 -1.1975 0.0016 8 8 4.2644 -2.3744 0.0021 9 6 3.4871 -3.5734 0.0027 10 6 4.4061 -4.7678 0.0026 11 8 5.6083 -4.6079 0.0016 12 7 3.8920 -6.0137 0.0025 13 6 2.4608 -6.3501 0.0019 14 6 2.3518 -7.8892 0.0283 15 6 3.7213 -8.3245 0.6133 16 8 3.7168 -8.2472 2.0402 17 6 4.0898 -9.7110 0.1516 18 1 3.4251 -10.2572 -0.5012 19 6 5.2750 -10.2825 0.5636 20 7 6.0842 -9.6176 1.3589 21 14 5.7314 -12.0013 -0.0081 22 1 4.6598 -12.5306 -0.8895 23 1 7.0108 -11.9495 -0.7601 24 1 5.8860 -12.8905 1.1712 25 6 4.6716 -7.2649 -0.0036 26 6 2.1970 -1.1971 0.0057 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8901 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.6555 2.1323 0.0004 31 1 4.1167 2.1394 0.0001 32 1 2.8583 -3.5985 0.8926 33 1 2.8582 -3.5993 -0.8873 34 1 1.9808 -5.9293 0.8855 35 1 1.9887 -5.9604 -0.8999 36 1 1.5363 -8.2071 0.6781 37 1 2.2166 -8.2836 -0.9788 38 1 4.5520 -8.5094 2.4511 39 1 6.9181 -10.0195 1.6484 40 1 4.9393 -7.5401 -1.0238 41 1 5.5671 -7.1568 0.6084 42 1 1.6564 -2.1322 0.0106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:14 Heat of formation + Delta-G solvation = -160.382062 kcal Electronic energy + Delta-G solvation = -27067.694165 eV Core-core repulsion = 22926.758827 eV Total energy + Delta-G solvation = -4140.935338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.84375 -41.56122 -40.70061 -39.15184 -38.36901 -36.14401 -34.17285 -33.34646 -32.20165 -31.36515 -30.15250 -29.19823 -27.50348 -26.67467 -24.42820 -23.51072 -22.65001 -21.49677 -20.41717 -19.39663 -19.13879 -18.21744 -18.10042 -17.73508 -17.49473 -17.12420 -16.73548 -16.46962 -16.01485 -15.97185 -15.48364 -15.23446 -14.90987 -14.74389 -14.66651 -14.39431 -14.33213 -14.10581 -13.53271 -13.52286 -13.36041 -12.92025 -12.88982 -12.83643 -12.54701 -12.53302 -12.32033 -12.20479 -12.14245 -12.11522 -11.94706 -11.27861 -11.03554 -10.67379 -10.34296 -9.84887 -9.56253 -9.19553 -8.28226 -6.45058 0.08476 0.22979 1.35523 1.41598 1.43934 1.44875 1.54154 2.34861 2.46521 2.53338 2.98408 3.24416 3.32540 3.74758 3.77421 3.77944 3.89334 3.95902 4.11789 4.15006 4.22602 4.25135 4.36401 4.48090 4.65979 4.71157 4.74698 4.91079 4.93654 4.99813 5.01115 5.08615 5.19832 5.24427 5.32488 5.38808 5.44415 5.51756 5.69682 5.74915 6.01455 6.18234 6.52308 6.65043 7.03391 7.27864 7.36145 8.77463 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025058 B = 0.002662 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.125145 B =10517.145518 C =11326.226530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.125 4.125 4 C -0.108 4.108 5 C 0.020 3.980 6 F -0.157 7.157 7 C 0.077 3.923 8 O -0.322 6.322 9 C 0.058 3.942 10 C 0.511 3.489 11 O -0.590 6.590 12 N -0.607 5.607 13 C 0.098 3.902 14 C -0.112 4.112 15 C 0.231 3.769 16 O -0.589 6.589 17 C -0.552 4.552 18 H 0.074 0.926 19 C 0.022 3.978 20 N -0.921 5.921 21 Si 0.966 3.034 22 H -0.260 1.260 23 H -0.285 1.285 24 H -0.280 1.280 25 C 0.105 3.895 26 C -0.186 4.186 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.377 0.623 39 H 0.270 0.730 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.587 19.295 -3.917 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.143 4.143 4 C -0.127 4.127 5 C 0.001 3.999 6 F -0.136 7.136 7 C 0.031 3.969 8 O -0.236 6.236 9 C -0.019 4.019 10 C 0.300 3.700 11 O -0.471 6.471 12 N -0.340 5.340 13 C -0.023 4.023 14 C -0.150 4.150 15 C 0.190 3.810 16 O -0.398 6.398 17 C -0.591 4.591 18 H 0.092 0.908 19 C -0.178 4.178 20 N -0.561 5.561 21 Si 0.791 3.209 22 H -0.184 1.184 23 H -0.212 1.212 24 H -0.206 1.206 25 C -0.018 4.018 26 C -0.205 4.205 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.145 19.602 -3.930 25.697 hybrid contribution 2.223 -1.500 0.060 2.683 sum -13.921 18.102 -3.871 23.162 Atomic orbital electron populations 1.20917 0.87744 1.04525 1.03895 1.20233 0.98289 0.91558 0.95064 1.21269 0.92153 0.99577 1.01321 1.21309 0.95819 0.95688 0.99881 1.17620 0.76697 0.93335 1.12260 1.91448 1.30023 1.97373 1.94731 1.19421 0.92523 0.84380 1.00558 1.86177 1.35938 1.12423 1.89044 1.22578 0.92359 0.80270 1.06694 1.20477 0.88656 0.84051 0.76812 1.90706 1.18109 1.86002 1.52264 1.48687 1.10044 1.04499 1.70787 1.22399 0.79463 0.96881 1.03561 1.22635 0.97033 0.93420 1.01867 1.19919 0.91372 0.91000 0.78698 1.86042 1.41585 1.90669 1.21544 1.21895 1.05228 1.01076 1.30858 0.90835 1.25880 0.95775 1.01844 0.94346 1.69690 1.12133 1.39185 1.35056 0.85380 0.78050 0.79280 0.78162 1.18405 1.21155 1.20616 1.22972 0.96260 0.83217 0.99386 1.21370 0.90155 1.01582 1.07385 0.89406 0.90370 0.89460 0.81345 0.82088 0.85988 0.85171 0.89566 0.87589 0.89258 0.88971 0.77259 0.92084 0.93292 0.94541 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 71.24 0.71 0.00 16 2 C -0.05 -0.67 5.88 -19.87 -0.12 -0.79 16 3 C -0.13 -1.59 9.69 22.28 0.22 -1.37 16 4 C -0.11 -1.95 10.02 22.30 0.22 -1.73 16 5 C 0.02 0.56 7.31 22.45 0.16 0.72 16 6 F -0.16 -5.29 17.11 44.97 0.77 -4.52 16 7 C 0.08 2.08 6.69 22.53 0.15 2.23 16 8 O -0.32 -11.04 9.53 -74.06 -0.71 -11.75 16 9 C 0.06 1.60 4.41 71.24 0.31 1.92 16 10 C 0.51 20.62 7.93 87.66 0.69 21.32 16 11 O -0.59 -30.89 16.75 16.00 0.27 -30.62 16 12 N -0.61 -23.75 3.32 -811.35 -2.70 -26.45 16 13 C 0.10 2.78 6.48 86.73 0.56 3.34 16 14 C -0.11 -3.85 6.12 31.78 0.19 -3.66 16 15 C 0.23 10.84 0.89 -10.07 -0.01 10.83 16 16 O -0.59 -29.98 13.19 -148.98 -1.97 -31.95 16 17 C -0.55 -28.05 8.25 25.60 0.21 -27.84 16 18 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 19 C 0.02 1.13 5.30 84.66 0.45 1.58 16 20 N -0.92 -50.59 10.72 21.45 0.23 -50.36 16 21 Si 0.97 41.55 29.54 68.60 2.03 43.58 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.10 5.09 5.64 86.93 0.49 5.58 16 26 C -0.19 -3.34 8.69 22.36 0.19 -3.15 16 27 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 29 H 0.09 0.30 8.08 -2.39 -0.02 0.28 16 30 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.12 2.57 7.65 -2.39 -0.02 2.55 16 33 H 0.13 2.47 7.67 -2.39 -0.02 2.46 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 37 H 0.09 2.91 8.02 -2.39 -0.02 2.89 16 38 H 0.38 20.62 6.93 -74.06 -0.51 20.11 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.05 2.45 8.03 -2.39 -0.02 2.43 16 41 H 0.04 2.09 7.64 -2.39 -0.02 2.07 16 42 H 0.16 2.01 6.30 -2.91 -0.02 1.99 16 Total: -1.00 -76.36 358.00 2.92 -73.45 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.54 Total: 29.64 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.45 Total: 8.98 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.47 Total: -76.81 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: -2.40 Total: -74.32 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.77 Total: -4.52 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -76.36 2.92 -73.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.936 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds