Wall clock time and date at job start Tue Mar 31 2020 14:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38422 * 122.53978 * 2 1 4 4 C 1.33390 * 114.91974 * 180.27355 * 3 2 1 5 5 S 1.75887 * 109.59170 * 359.77436 * 4 3 2 6 6 C 1.33385 * 122.53878 * 179.83646 * 2 1 3 7 7 C 1.50700 * 125.20379 * 0.02562 * 6 2 1 8 8 C 1.53001 * 109.47246 * 89.72162 * 7 6 2 9 9 C 1.52996 * 109.47327 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47349 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99679 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00178 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.65138 * 359.97438 * 12 10 9 14 14 C 1.54322 * 107.27482 * 178.98361 * 13 12 10 15 15 C 1.55157 * 102.93912 * 337.80443 * 14 13 12 16 16 O 1.42900 * 111.00520 * 277.38901 * 15 14 13 17 17 C 1.50702 * 111.00344 * 153.57728 * 15 14 13 18 18 H 1.08002 * 120.00299 * 241.45696 * 17 15 14 19 19 C 1.37884 * 119.99942 * 61.17254 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47424 * 125.64952 * 180.02562 * 12 10 9 26 26 H 1.08995 * 109.46869 * 270.17066 * 1 2 3 27 27 H 1.09008 * 109.46769 * 30.16496 * 1 2 3 28 28 H 1.08996 * 109.47191 * 150.16660 * 1 2 3 29 29 H 1.07998 * 122.54538 * 0.04482 * 3 2 1 30 30 H 1.08006 * 125.20331 * 179.79037 * 4 3 2 31 31 H 1.09009 * 109.47042 * 329.72278 * 7 6 2 32 32 H 1.09003 * 109.47533 * 209.72094 * 7 6 2 33 33 H 1.08999 * 109.46836 * 60.00224 * 8 7 6 34 34 H 1.09003 * 109.46799 * 300.00382 * 8 7 6 35 35 H 1.09005 * 109.47314 * 59.99520 * 9 8 7 36 36 H 1.09003 * 109.47348 * 299.99869 * 9 8 7 37 37 H 1.09003 * 109.88076 * 59.56192 * 13 12 10 38 38 H 1.09001 * 110.00358 * 298.47568 * 13 12 10 39 39 H 1.08995 * 110.71729 * 219.44160 * 14 13 12 40 40 H 1.08996 * 110.71909 * 96.16437 * 14 13 12 41 41 H 0.96704 * 113.99783 * 295.41666 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.09007 * 110.36818 * 85.24741 * 25 12 10 44 44 H 1.09006 * 110.37032 * 322.92419 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 -0.0058 5 16 3.9385 -0.7306 -0.0051 6 6 2.2245 -1.1245 0.0032 7 6 1.6537 -2.5192 0.0066 8 6 1.4545 -2.9923 -1.4347 9 6 0.8744 -4.4080 -1.4312 10 6 0.6777 -4.8738 -2.8508 11 8 0.9729 -4.1453 -3.7744 12 7 0.1747 -6.1003 -3.0941 13 6 -0.2220 -7.0816 -2.0737 14 6 -0.7614 -8.3223 -2.8163 15 6 -1.1653 -7.7501 -4.2008 16 8 -2.4620 -7.1518 -4.1493 17 6 -1.1077 -8.8168 -5.2638 18 1 -0.4334 -8.7094 -6.1006 19 6 -1.9115 -9.9327 -5.1650 20 7 -2.7326 -10.0635 -4.1459 21 14 -1.8345 -11.2585 -6.4785 22 1 -0.8378 -10.8755 -7.5106 23 1 -1.4340 -12.5471 -5.8584 24 1 -3.1700 -11.4074 -7.1107 25 6 -0.0679 -6.6805 -4.4274 26 1 -0.3633 0.0031 1.0276 27 1 -0.3633 0.8886 -0.5164 28 1 -0.3633 -0.8914 -0.5112 29 1 1.7966 2.1464 0.0007 30 1 4.3078 1.7822 -0.0099 31 1 0.6944 -2.5179 0.5245 32 1 2.3418 -3.1922 0.5182 33 1 2.4137 -2.9936 -1.9524 34 1 0.7664 -2.3193 -1.9462 35 1 -0.0848 -4.4064 -0.9135 36 1 1.5622 -5.0813 -0.9196 37 1 -1.0019 -6.6614 -1.4387 38 1 0.6405 -7.3584 -1.4673 39 1 -1.6293 -8.7331 -2.3007 40 1 0.0179 -9.0767 -2.9233 41 1 -3.1760 -7.7761 -3.9603 42 1 -3.2984 -10.8484 -4.0766 43 1 0.8411 -7.1447 -4.8103 44 1 -0.4222 -5.9136 -5.1162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:50 Heat of formation + Delta-G solvation = -72.849816 kcal Electronic energy + Delta-G solvation = -24595.444315 eV Core-core repulsion = 21024.517837 eV Total energy + Delta-G solvation = -3570.926479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.54815 -38.71510 -37.32749 -34.75926 -34.28116 -32.24516 -31.24611 -29.96905 -29.09697 -28.21483 -26.07629 -24.81805 -23.06870 -22.30041 -21.46840 -19.73344 -18.75757 -18.46579 -17.44494 -17.16612 -16.46120 -15.84385 -15.38377 -15.05067 -14.94983 -14.53045 -14.28058 -14.15604 -13.71290 -13.25350 -13.19403 -13.00413 -12.57007 -12.46663 -12.27290 -12.03209 -12.01530 -11.86365 -11.65739 -11.55676 -11.38425 -11.32619 -11.27293 -10.92368 -10.90456 -10.66514 -10.59768 -10.47950 -10.04861 -9.44363 -9.30636 -8.73496 -8.70830 -8.47632 -8.24190 -7.97811 -6.31346 -4.39426 0.83682 1.48719 1.85036 2.52040 3.10926 3.16916 3.26232 3.30795 3.57845 4.24748 4.55395 4.74370 4.82375 4.87326 4.97444 5.11132 5.17128 5.26841 5.34190 5.45249 5.47415 5.50851 5.55140 5.60388 5.67469 5.74113 5.78406 5.85123 5.89165 6.01161 6.11049 6.25731 6.28839 6.32300 6.42006 6.43273 6.65670 6.88473 6.96931 7.28821 7.33092 7.70864 7.98971 8.16310 8.63017 8.68092 9.28178 9.37242 10.75855 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.034843 B = 0.002167 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.420638 B =12917.898939 C =13094.170826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.112 4.112 3 C -0.127 4.127 4 C -0.219 4.219 5 S 0.090 5.910 6 C -0.167 4.167 7 C -0.050 4.050 8 C -0.097 4.097 9 C -0.135 4.135 10 C 0.521 3.479 11 O -0.556 6.556 12 N -0.608 5.608 13 C 0.099 3.901 14 C -0.136 4.136 15 C 0.247 3.753 16 O -0.583 6.583 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.119 3.881 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.381 0.619 42 H 0.267 0.733 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 14.881 12.990 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.158 4.158 4 C -0.354 4.354 5 S 0.355 5.645 6 C -0.284 4.284 7 C -0.089 4.089 8 C -0.135 4.135 9 C -0.175 4.175 10 C 0.309 3.691 11 O -0.436 6.436 12 N -0.341 5.341 13 C -0.024 4.024 14 C -0.175 4.175 15 C 0.206 3.794 16 O -0.391 6.391 17 C -0.573 4.573 18 H 0.083 0.917 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.002 4.002 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.155 0.845 30 H 0.179 0.821 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.867 14.920 12.463 21.801 hybrid contribution -1.509 -0.496 -0.415 1.641 sum 8.359 14.424 12.048 20.568 Atomic orbital electron populations 1.20539 0.89743 1.03090 1.02123 1.18861 0.97520 0.91587 1.04364 1.20048 0.92876 0.99244 1.03640 1.25516 0.99722 0.98964 1.11237 1.84290 1.06275 1.00589 1.73351 1.24309 0.95427 0.99152 1.09543 1.20209 1.01033 0.89657 0.98047 1.21326 1.02546 0.94813 0.94833 1.21628 1.03131 0.97891 0.94856 1.20195 0.77359 0.80262 0.91258 1.90661 1.52197 1.54150 1.46577 1.48649 1.61598 1.14306 1.09498 1.22176 0.98071 0.90925 0.91218 1.23165 1.01282 0.94143 0.98870 1.19623 0.80590 0.87798 0.91356 1.86138 1.17784 1.40534 1.94694 1.21493 1.23617 1.03565 1.08621 0.91667 1.24999 0.94468 0.97946 0.95664 1.69728 1.24488 1.29770 1.29461 0.86365 0.78153 0.80979 0.81510 1.19568 1.20833 1.20763 1.22357 0.98187 0.96223 0.83456 0.91371 0.91557 0.91103 0.84497 0.82102 0.89766 0.90715 0.91039 0.90787 0.89066 0.89250 0.92427 0.92898 0.89506 0.91408 0.76944 0.92278 0.91135 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.60 36.01 0.35 -0.48 16 2 C -0.11 -1.14 5.80 -106.25 -0.62 -1.75 16 3 C -0.13 -1.19 9.98 -41.21 -0.41 -1.60 16 4 C -0.22 -1.99 11.23 29.04 0.33 -1.66 16 5 S 0.09 0.90 23.33 -107.50 -2.51 -1.61 16 6 C -0.17 -1.77 5.76 -36.00 -0.21 -1.98 16 7 C -0.05 -0.49 5.07 -27.88 -0.14 -0.63 16 8 C -0.10 -1.19 4.49 -26.73 -0.12 -1.31 16 9 C -0.14 -1.75 4.89 -27.89 -0.14 -1.88 16 10 C 0.52 9.62 7.85 -10.99 -0.09 9.53 16 11 O -0.56 -12.19 16.24 5.56 0.09 -12.10 16 12 N -0.61 -11.88 3.33 -170.52 -0.57 -12.45 16 13 C 0.10 1.73 6.49 -3.06 -0.02 1.71 16 14 C -0.14 -2.85 5.38 -24.90 -0.13 -2.99 16 15 C 0.25 5.88 0.88 -89.62 -0.08 5.80 16 16 O -0.58 -14.65 13.18 -35.23 -0.46 -15.11 16 17 C -0.53 -13.76 8.27 -34.44 -0.28 -14.05 16 18 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 19 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 20 N -0.90 -22.62 10.73 55.43 0.59 -22.03 16 21 Si 0.90 19.97 29.54 -169.99 -5.02 14.94 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.12 2.67 6.08 -2.53 -0.02 2.66 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.51 8.13 -51.92 -0.42 0.09 16 28 H 0.07 0.64 6.95 -51.93 -0.36 0.28 16 29 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.08 0.72 7.33 -51.92 -0.38 0.34 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 40 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 41 H 0.38 9.52 7.51 45.56 0.34 9.87 16 42 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 43 H 0.07 1.54 8.03 -51.92 -0.42 1.12 16 44 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -29.09 373.20 -10.14 -39.23 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.22 Total: 10.41 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.67 Total: -6.91 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.03 Total: -34.48 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.37 Total: -27.21 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.09 -10.14 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.616 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds