Wall clock time and date at job start Tue Mar 31 2020 14:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38422 * 122.53978 * 2 1 4 4 C 1.33390 * 114.91974 * 180.27355 * 3 2 1 5 5 S 1.75887 * 109.59170 * 359.77436 * 4 3 2 6 6 C 1.33385 * 122.53878 * 179.83646 * 2 1 3 7 7 C 1.50700 * 125.20379 * 0.02562 * 6 2 1 8 8 C 1.53001 * 109.47246 * 89.72162 * 7 6 2 9 9 C 1.52996 * 109.47327 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47349 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99679 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00178 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.65138 * 359.97438 * 12 10 9 14 14 C 1.54322 * 107.27482 * 178.98361 * 13 12 10 15 15 C 1.55157 * 102.93912 * 337.80443 * 14 13 12 16 16 O 1.42900 * 111.00520 * 277.38901 * 15 14 13 17 17 C 1.50702 * 111.00344 * 153.57728 * 15 14 13 18 18 H 1.08002 * 120.00299 * 241.45696 * 17 15 14 19 19 C 1.37884 * 119.99942 * 61.17254 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47424 * 125.64952 * 180.02562 * 12 10 9 26 26 H 1.08995 * 109.46869 * 270.17066 * 1 2 3 27 27 H 1.09008 * 109.46769 * 30.16496 * 1 2 3 28 28 H 1.08996 * 109.47191 * 150.16660 * 1 2 3 29 29 H 1.07998 * 122.54538 * 0.04482 * 3 2 1 30 30 H 1.08006 * 125.20331 * 179.79037 * 4 3 2 31 31 H 1.09009 * 109.47042 * 329.72278 * 7 6 2 32 32 H 1.09003 * 109.47533 * 209.72094 * 7 6 2 33 33 H 1.08999 * 109.46836 * 60.00224 * 8 7 6 34 34 H 1.09003 * 109.46799 * 300.00382 * 8 7 6 35 35 H 1.09005 * 109.47314 * 59.99520 * 9 8 7 36 36 H 1.09003 * 109.47348 * 299.99869 * 9 8 7 37 37 H 1.09003 * 109.88076 * 59.56192 * 13 12 10 38 38 H 1.09001 * 110.00358 * 298.47568 * 13 12 10 39 39 H 1.08995 * 110.71729 * 219.44160 * 14 13 12 40 40 H 1.08996 * 110.71909 * 96.16437 * 14 13 12 41 41 H 0.96704 * 113.99783 * 295.41666 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.09007 * 110.36818 * 85.24741 * 25 12 10 44 44 H 1.09006 * 110.37032 * 322.92419 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 -0.0058 5 16 3.9385 -0.7306 -0.0051 6 6 2.2245 -1.1245 0.0032 7 6 1.6537 -2.5192 0.0066 8 6 1.4545 -2.9923 -1.4347 9 6 0.8744 -4.4080 -1.4312 10 6 0.6777 -4.8738 -2.8508 11 8 0.9729 -4.1453 -3.7744 12 7 0.1747 -6.1003 -3.0941 13 6 -0.2220 -7.0816 -2.0737 14 6 -0.7614 -8.3223 -2.8163 15 6 -1.1653 -7.7501 -4.2008 16 8 -2.4620 -7.1518 -4.1493 17 6 -1.1077 -8.8168 -5.2638 18 1 -0.4334 -8.7094 -6.1006 19 6 -1.9115 -9.9327 -5.1650 20 7 -2.7326 -10.0635 -4.1459 21 14 -1.8345 -11.2585 -6.4785 22 1 -0.8378 -10.8755 -7.5106 23 1 -1.4340 -12.5471 -5.8584 24 1 -3.1700 -11.4074 -7.1107 25 6 -0.0679 -6.6805 -4.4274 26 1 -0.3633 0.0031 1.0276 27 1 -0.3633 0.8886 -0.5164 28 1 -0.3633 -0.8914 -0.5112 29 1 1.7966 2.1464 0.0007 30 1 4.3078 1.7822 -0.0099 31 1 0.6944 -2.5179 0.5245 32 1 2.3418 -3.1922 0.5182 33 1 2.4137 -2.9936 -1.9524 34 1 0.7664 -2.3193 -1.9462 35 1 -0.0848 -4.4064 -0.9135 36 1 1.5622 -5.0813 -0.9196 37 1 -1.0019 -6.6614 -1.4387 38 1 0.6405 -7.3584 -1.4673 39 1 -1.6293 -8.7331 -2.3007 40 1 0.0179 -9.0767 -2.9233 41 1 -3.1760 -7.7761 -3.9603 42 1 -3.2984 -10.8484 -4.0766 43 1 0.8411 -7.1447 -4.8103 44 1 -0.4222 -5.9136 -5.1162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:49 Heat of formation + Delta-G solvation = -89.792344 kcal Electronic energy + Delta-G solvation = -24596.178998 eV Core-core repulsion = 21024.517837 eV Total energy + Delta-G solvation = -3571.661162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05699 -39.49864 -38.95644 -36.06642 -35.70101 -34.21363 -32.21252 -31.39067 -30.25672 -29.66734 -27.39506 -26.19780 -24.15766 -23.45869 -22.49431 -21.50856 -20.14649 -19.26351 -19.10239 -18.33303 -17.76073 -17.10043 -16.91611 -16.53054 -16.21606 -15.90538 -15.65060 -15.14405 -15.01788 -14.73086 -14.21982 -14.00981 -13.86245 -13.67566 -13.56539 -13.29241 -13.19805 -13.11456 -13.00315 -12.79977 -12.64105 -12.55791 -12.48450 -12.42362 -12.26243 -12.18850 -11.85067 -11.71896 -11.45995 -11.26095 -10.87902 -10.63348 -10.14196 -9.54653 -9.46417 -9.21257 -8.24350 -6.39140 0.10987 0.77333 1.13421 1.40344 1.45116 1.54719 1.67804 1.80320 2.11772 2.40497 3.00585 3.57207 3.74794 3.83556 4.01420 4.05471 4.10814 4.25177 4.32162 4.36537 4.44038 4.51039 4.60941 4.62787 4.64269 4.69505 4.74217 4.78503 4.86380 4.90303 4.93518 5.11936 5.14010 5.19904 5.24399 5.29487 5.38549 5.47285 5.56615 5.57893 5.70658 5.78093 6.08330 6.63378 6.69447 7.20082 7.31356 7.40276 8.81374 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.034843 B = 0.002167 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.420638 B =12917.898939 C =13094.170826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.120 4.120 3 C -0.140 4.140 4 C -0.217 4.217 5 S 0.070 5.930 6 C -0.187 4.187 7 C -0.042 4.042 8 C -0.088 4.088 9 C -0.123 4.123 10 C 0.513 3.487 11 O -0.599 6.599 12 N -0.613 5.613 13 C 0.106 3.894 14 C -0.127 4.127 15 C 0.233 3.767 16 O -0.593 6.593 17 C -0.562 4.562 18 H 0.052 0.948 19 C 0.038 3.962 20 N -0.905 5.905 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.274 1.274 24 H -0.280 1.280 25 C 0.123 3.877 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.156 0.844 30 H 0.183 0.817 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.378 0.622 42 H 0.271 0.729 43 H 0.069 0.931 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.325 15.003 15.057 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C -0.170 4.170 4 C -0.353 4.353 5 S 0.335 5.665 6 C -0.304 4.304 7 C -0.081 4.081 8 C -0.127 4.127 9 C -0.162 4.162 10 C 0.304 3.696 11 O -0.482 6.482 12 N -0.345 5.345 13 C -0.016 4.016 14 C -0.166 4.166 15 C 0.193 3.807 16 O -0.402 6.402 17 C -0.600 4.600 18 H 0.070 0.930 19 C -0.164 4.164 20 N -0.543 5.543 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.200 1.200 24 H -0.206 1.206 25 C 0.000 4.000 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.200 0.800 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.227 0.773 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.110 15.039 14.561 23.247 hybrid contribution -1.596 -0.477 -1.114 2.003 sum 8.515 14.562 13.448 21.573 Atomic orbital electron populations 1.20576 0.88792 1.03116 1.02988 1.19197 0.98451 0.91856 1.03735 1.20329 0.93074 0.99946 1.03669 1.25837 1.00255 0.98781 1.10382 1.84313 1.06635 1.01855 1.73723 1.24478 0.95534 0.99728 1.10612 1.20151 1.02237 0.89488 0.96190 1.21211 1.00875 0.94271 0.96355 1.21679 1.05205 0.98367 0.90934 1.21273 0.75907 0.79191 0.93252 1.90641 1.53820 1.55134 1.48561 1.48756 1.61939 1.15227 1.08558 1.22236 1.00169 0.88753 0.90464 1.22944 1.00724 0.95521 0.97363 1.19786 0.80193 0.87957 0.92769 1.86124 1.18395 1.40779 1.94861 1.21690 1.24223 1.04877 1.09238 0.93017 1.25584 0.94119 0.99369 0.97339 1.69780 1.24343 1.30178 1.30038 0.85504 0.77835 0.78936 0.79284 1.20066 1.19962 1.20598 1.22099 0.97652 0.95229 0.84985 0.90005 0.90920 0.91714 0.82668 0.79994 0.88133 0.89325 0.93012 0.92761 0.86599 0.86217 0.90458 0.89002 0.90536 0.92068 0.77272 0.91928 0.91321 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.60 71.24 0.68 -0.79 16 2 C -0.12 -2.28 5.80 -20.92 -0.12 -2.40 16 3 C -0.14 -2.39 9.98 21.22 0.21 -2.18 16 4 C -0.22 -3.62 11.23 66.72 0.75 -2.87 16 5 S 0.07 1.33 23.33 -56.49 -1.32 0.01 16 6 C -0.19 -3.69 5.76 24.59 0.14 -3.55 16 7 C -0.04 -0.72 5.07 29.85 0.15 -0.56 16 8 C -0.09 -2.06 4.49 30.59 0.14 -1.92 16 9 C -0.12 -2.82 4.89 29.85 0.15 -2.68 16 10 C 0.51 18.44 7.85 87.66 0.69 19.13 16 11 O -0.60 -26.69 16.24 -3.03 -0.05 -26.74 16 12 N -0.61 -23.32 3.33 -811.78 -2.70 -26.02 16 13 C 0.11 3.40 6.49 86.73 0.56 3.97 16 14 C -0.13 -5.21 5.38 31.78 0.17 -5.04 16 15 C 0.23 11.22 0.88 -10.15 -0.01 11.21 16 16 O -0.59 -30.22 13.18 -148.98 -1.96 -32.19 16 17 C -0.56 -29.44 8.27 25.60 0.21 -29.23 16 18 H 0.05 2.76 7.79 -2.91 -0.02 2.74 16 19 C 0.04 1.89 5.27 84.66 0.45 2.34 16 20 N -0.90 -45.41 10.73 21.45 0.23 -45.18 16 21 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.12 5.64 6.08 86.86 0.53 6.17 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.00 8.13 -2.38 -0.02 0.98 16 28 H 0.06 1.07 6.95 -2.39 -0.02 1.05 16 29 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.10 1.40 7.33 -2.38 -0.02 1.38 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.05 1.46 7.79 -2.39 -0.02 1.45 16 35 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.08 3.29 7.54 -2.39 -0.02 3.27 16 40 H 0.06 2.55 8.03 -2.39 -0.02 2.53 16 41 H 0.38 19.17 7.51 -74.05 -0.56 18.62 16 42 H 0.27 12.92 8.31 -92.70 -0.77 12.15 16 43 H 0.07 3.09 8.03 -2.38 -0.02 3.08 16 44 H 0.04 2.10 8.04 -2.38 -0.02 2.08 16 Total: -1.00 -64.11 373.20 1.37 -62.75 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.44 Total: 32.87 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.70 Total: -8.40 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -2.47 Total: -71.20 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -2.01 Total: -58.93 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -64.11 1.37 -62.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.047 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds