Wall clock time and date at job start Tue Mar 31 2020 14:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33395 * 125.20292 * 2 1 4 4 C 1.38427 * 114.91892 * 179.75342 * 3 2 1 5 5 C 1.33385 * 114.91917 * 0.43188 * 4 3 2 6 6 C 1.50709 * 125.20127 * 179.86210 * 5 4 3 7 7 C 1.52996 * 109.47079 * 89.71891 * 6 5 4 8 8 C 1.52998 * 109.46929 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47348 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99503 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00081 * 179.72561 * 9 8 7 12 12 C 1.47014 * 125.65113 * 0.02562 * 11 9 8 13 13 C 1.54322 * 107.27676 * 181.02629 * 12 11 9 14 14 C 1.55163 * 102.93907 * 22.19393 * 13 12 11 15 15 O 1.42893 * 111.00486 * 82.57326 * 14 13 12 16 16 C 1.50697 * 111.00315 * 206.42692 * 14 13 12 17 17 H 1.08002 * 120.00370 * 118.54785 * 16 14 13 18 18 C 1.37872 * 120.00118 * 298.54528 * 16 14 13 19 19 N 1.31516 * 119.99946 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 120.00214 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47061 * 89.99871 * 20 18 16 22 22 H 1.48499 * 109.46976 * 209.99965 * 20 18 16 23 23 H 1.48497 * 109.46871 * 330.00239 * 20 18 16 24 24 C 1.47422 * 125.64458 * 179.72077 * 11 9 8 25 25 S 1.75880 * 109.59797 * 359.59588 * 5 4 3 26 26 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46719 * 299.99779 * 1 2 3 28 28 H 1.09002 * 109.47124 * 59.99358 * 1 2 3 29 29 H 1.08000 * 122.53966 * 359.97438 * 3 2 1 30 30 H 1.08002 * 122.53727 * 180.28216 * 4 3 2 31 31 H 1.09000 * 109.46736 * 329.71763 * 6 5 4 32 32 H 1.08994 * 109.47114 * 209.71998 * 6 5 4 33 33 H 1.09000 * 109.47441 * 60.00304 * 7 6 5 34 34 H 1.09002 * 109.47087 * 299.99750 * 7 6 5 35 35 H 1.09001 * 109.47671 * 60.00109 * 8 7 6 36 36 H 1.08998 * 109.47454 * 300.00107 * 8 7 6 37 37 H 1.09004 * 109.88637 * 300.44775 * 12 11 9 38 38 H 1.09005 * 109.88390 * 61.45570 * 12 11 9 39 39 H 1.08995 * 110.72455 * 140.55753 * 13 12 11 40 40 H 1.09000 * 110.71837 * 263.83316 * 13 12 11 41 41 H 0.96704 * 113.99780 * 61.45605 * 15 14 13 42 42 H 0.97001 * 120.00089 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.36501 * 274.73856 * 24 11 9 44 44 H 1.08994 * 110.37145 * 37.06407 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0054 5 6 3.9751 -0.4477 0.0007 6 6 5.3861 -0.9771 0.0020 7 6 5.8624 -1.1558 1.4449 8 6 7.2951 -1.6927 1.4461 9 6 7.7646 -1.8682 2.8674 10 8 7.0261 -1.5907 3.7885 11 7 9.0033 -2.3382 3.1147 12 6 9.9952 -2.7165 2.0977 13 6 11.2484 -3.2195 2.8445 14 6 10.6855 -3.6289 4.2312 15 8 10.1196 -4.9402 4.1875 16 6 11.7495 -3.5373 5.2945 17 1 11.6244 -2.8607 6.1269 18 6 12.8828 -4.3174 5.2047 19 7 13.0355 -5.1411 4.1909 20 14 14.2014 -4.2044 6.5231 21 1 13.9116 -5.1867 7.5985 22 1 15.5271 -4.5029 5.9241 23 1 14.2137 -2.8339 7.0947 24 6 9.5902 -2.5523 4.4500 25 16 2.5210 -1.4372 0.0004 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8669 2.0895 -0.0004 30 1 4.3721 1.6350 0.0105 31 1 6.0393 -0.2716 -0.5116 32 1 5.4141 -1.9380 -0.5116 33 1 5.2093 -1.8614 1.9584 34 1 5.8345 -0.1948 1.9584 35 1 7.9481 -0.9869 0.9328 36 1 7.3236 -2.6536 0.9324 37 1 9.5955 -3.5109 1.4673 38 1 10.2480 -1.8502 1.4862 39 1 11.6817 -4.0800 2.3348 40 1 11.9829 -2.4206 2.9470 41 1 10.7522 -5.6341 3.9562 42 1 13.8327 -5.6902 4.1279 43 1 10.0323 -1.6282 4.8226 44 1 8.8327 -2.9178 5.1433 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:07 Heat of formation + Delta-G solvation = -90.742918 kcal Electronic energy + Delta-G solvation = -24243.194785 eV Core-core repulsion = 20671.492403 eV Total energy + Delta-G solvation = -3571.702382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05648 -39.19028 -38.86547 -36.07965 -35.89189 -34.22037 -32.85653 -31.55497 -30.23113 -29.47642 -27.18119 -25.81399 -24.16901 -23.57865 -22.51643 -21.52078 -20.16483 -19.67749 -19.08579 -18.19284 -17.66314 -17.06299 -16.91168 -16.61390 -16.15523 -15.85183 -15.72646 -15.12148 -14.92513 -14.74218 -14.27915 -14.04221 -13.87711 -13.82893 -13.67182 -13.39691 -13.30283 -13.22182 -13.02018 -12.79009 -12.65043 -12.48828 -12.44434 -12.31925 -12.25837 -12.20057 -11.84590 -11.71171 -11.50087 -11.26637 -10.88367 -10.62833 -10.15155 -9.55330 -9.39477 -9.30687 -8.24092 -6.38769 0.08425 0.71173 1.09856 1.41459 1.44878 1.53128 1.66965 1.83884 2.11594 2.40409 3.00700 3.56531 3.73973 3.82798 4.00339 4.03435 4.04309 4.26617 4.32961 4.37663 4.42002 4.46058 4.58833 4.60891 4.63630 4.71347 4.74274 4.77895 4.81885 4.88929 4.92304 5.09984 5.12158 5.19330 5.27848 5.32623 5.38092 5.41390 5.46356 5.55809 5.67853 5.77712 6.09270 6.63228 6.68840 7.19378 7.31356 7.40011 8.81631 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.002000 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.130714 B =13997.829573 C =14043.889163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.189 4.189 3 C -0.152 4.152 4 C -0.144 4.144 5 C -0.183 4.183 6 C -0.042 4.042 7 C -0.089 4.089 8 C -0.122 4.122 9 C 0.512 3.488 10 O -0.600 6.600 11 N -0.613 5.613 12 C 0.105 3.895 13 C -0.127 4.127 14 C 0.233 3.767 15 O -0.594 6.594 16 C -0.563 4.563 17 H 0.052 0.948 18 C 0.038 3.962 19 N -0.905 5.905 20 Si 0.958 3.042 21 H -0.281 1.281 22 H -0.276 1.276 23 H -0.273 1.273 24 C 0.123 3.877 25 S 0.065 5.935 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.378 0.622 42 H 0.271 0.729 43 H 0.070 0.930 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 9.765 -15.200 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.306 4.306 3 C -0.181 4.181 4 C -0.174 4.174 5 C -0.300 4.300 6 C -0.081 4.081 7 C -0.128 4.128 8 C -0.162 4.162 9 C 0.303 3.697 10 O -0.482 6.482 11 N -0.345 5.345 12 C -0.016 4.016 13 C -0.166 4.166 14 C 0.193 3.807 15 O -0.402 6.402 16 C -0.601 4.601 17 H 0.070 0.930 18 C -0.164 4.164 19 N -0.543 5.543 20 Si 0.784 3.216 21 H -0.207 1.207 22 H -0.201 1.201 23 H -0.197 1.197 24 C 0.000 4.000 25 S 0.329 5.671 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.227 0.773 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.251 8.587 -14.684 24.228 hybrid contribution 1.675 0.895 1.113 2.202 sum -15.576 9.483 -13.571 22.731 Atomic orbital electron populations 1.20412 0.86226 1.03399 1.03962 1.24858 1.01124 0.95120 1.09534 1.20313 0.92927 1.00094 1.04788 1.20368 0.96917 0.96206 1.03930 1.24630 0.98894 0.96604 1.09911 1.20174 0.89120 1.02653 0.96130 1.21233 0.93987 1.01214 0.96377 1.21681 0.98249 1.05377 0.90875 1.21288 0.79297 0.75807 0.93272 1.90641 1.55009 1.53765 1.48805 1.48762 1.14092 1.63082 1.08585 1.22246 0.88436 1.00446 0.90507 1.22952 0.95452 1.00911 0.97236 1.19827 0.88106 0.79953 0.92831 1.86129 1.41787 1.18711 1.93570 1.21666 1.04008 1.24842 1.09583 0.92977 1.25582 0.99392 0.94073 0.97349 1.69772 1.29392 1.24894 1.30265 0.85560 0.78436 0.78377 0.79235 1.20688 1.20135 1.19736 1.22150 0.95054 0.97866 0.84910 1.84377 0.97809 1.10926 1.73996 0.91272 0.89741 0.89170 0.82717 0.83043 0.87563 0.89637 0.93520 0.92311 0.85785 0.86967 0.90568 0.88850 0.90545 0.91944 0.77306 0.91946 0.91174 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.38 71.24 0.74 -0.22 16 2 C -0.19 -3.35 6.51 24.59 0.16 -3.19 16 3 C -0.15 -2.63 10.05 21.22 0.21 -2.41 16 4 C -0.14 -2.68 10.05 21.22 0.21 -2.46 16 5 C -0.18 -3.64 5.76 24.59 0.14 -3.50 16 6 C -0.04 -0.71 5.71 29.85 0.17 -0.54 16 7 C -0.09 -2.09 4.49 30.59 0.14 -1.95 16 8 C -0.12 -2.84 4.89 29.85 0.15 -2.69 16 9 C 0.51 18.53 7.85 87.66 0.69 19.21 16 10 O -0.60 -26.88 16.23 -3.04 -0.05 -26.93 16 11 N -0.61 -23.42 3.32 -811.35 -2.70 -26.12 16 12 C 0.11 3.40 6.48 86.73 0.56 3.96 16 13 C -0.13 -5.21 5.38 31.78 0.17 -5.03 16 14 C 0.23 11.26 0.87 -10.07 -0.01 11.25 16 15 O -0.59 -30.49 13.17 -148.98 -1.96 -32.45 16 16 C -0.56 -29.59 8.27 25.60 0.21 -29.38 16 17 H 0.05 2.78 7.79 -2.91 -0.02 2.76 16 18 C 0.04 1.91 5.29 84.65 0.45 2.36 16 19 N -0.90 -45.62 10.76 21.45 0.23 -45.39 16 20 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C 0.12 5.65 6.10 86.94 0.53 6.18 16 25 S 0.07 1.31 23.31 -56.49 -1.32 0.00 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.08 3.28 7.55 -2.39 -0.02 3.26 16 40 H 0.06 2.59 8.03 -2.39 -0.02 2.58 16 41 H 0.38 19.22 7.57 -74.05 -0.56 18.66 16 42 H 0.27 13.02 8.31 -92.71 -0.77 12.24 16 43 H 0.07 3.15 8.03 -2.39 -0.02 3.13 16 44 H 0.04 2.06 8.03 -2.39 -0.02 2.04 16 Total: -1.00 -64.96 376.64 1.19 -63.78 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.43 Total: 32.49 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.52 Total: -8.41 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -2.47 Total: -71.50 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -2.01 Total: -59.38 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: 0.00 kcal Total: -64.96 1.19 -63.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.965 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds