Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33393 * 125.20553 * 2 1 4 4 C 1.38417 * 114.92422 * 179.97438 * 3 2 1 5 5 C 1.33397 * 114.92180 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20347 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46940 * 90.00064 * 6 5 4 8 8 C 1.53004 * 109.47000 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47208 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 7 12 12 C 1.47419 * 125.65146 * 359.74383 * 11 9 8 13 13 C 1.54911 * 104.83630 * 204.09512 * 12 11 9 14 14 C 1.55156 * 101.57846 * 322.99597 * 13 12 11 15 15 O 1.42907 * 110.71807 * 276.95803 * 14 13 12 16 16 C 1.50698 * 110.72028 * 153.86437 * 14 13 12 17 17 H 1.08001 * 119.99903 * 241.44872 * 16 14 13 18 18 C 1.37877 * 120.00102 * 61.44951 * 16 14 13 19 19 N 1.31512 * 119.99914 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00171 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47090 * 60.00106 * 20 18 16 22 22 H 1.48504 * 109.47176 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47159 * 300.00155 * 20 18 16 24 24 C 1.47028 * 125.64354 * 179.44686 * 11 9 8 25 25 S 1.75883 * 109.59041 * 0.24047 * 5 4 3 26 26 H 1.09004 * 109.46952 * 90.00057 * 1 2 3 27 27 H 1.09003 * 109.47634 * 209.99993 * 1 2 3 28 28 H 1.08997 * 109.47365 * 330.00474 * 1 2 3 29 29 H 1.08000 * 122.53624 * 359.97438 * 3 2 1 30 30 H 1.07998 * 122.54651 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.46839 * 329.99676 * 6 5 4 32 32 H 1.09001 * 109.46310 * 209.99439 * 6 5 4 33 33 H 1.09000 * 109.47849 * 59.99708 * 7 6 5 34 34 H 1.08998 * 109.47443 * 299.99576 * 7 6 5 35 35 H 1.09009 * 109.46730 * 59.99606 * 8 7 6 36 36 H 1.08998 * 109.46846 * 300.00150 * 8 7 6 37 37 H 1.08998 * 110.36747 * 322.93640 * 12 11 9 38 38 H 1.09003 * 110.36475 * 85.25954 * 12 11 9 39 39 H 1.09001 * 110.99900 * 81.06373 * 13 12 11 40 40 H 1.08997 * 111.00782 * 204.88088 * 13 12 11 41 41 H 0.96699 * 113.99956 * 298.54388 * 15 14 13 42 42 H 0.97002 * 120.00192 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.87760 * 298.38550 * 24 11 9 44 44 H 1.08992 * 109.88468 * 59.55598 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8429 0.0006 5 6 3.9751 -0.4478 0.0016 6 6 5.3861 -0.9771 0.0018 7 6 5.8638 -1.1550 1.4443 8 6 7.2961 -1.6931 1.4446 9 6 7.7668 -1.8678 2.8655 10 8 7.0295 -1.5889 3.7872 11 7 9.0094 -2.3281 3.1119 12 6 10.0051 -2.7024 2.0912 13 6 10.9489 -3.7018 2.8056 14 6 11.0198 -3.0974 4.2328 15 8 11.9908 -2.0504 4.2908 16 6 11.3293 -4.1658 5.2495 17 1 10.6236 -4.3814 6.0381 18 6 12.5134 -4.8680 5.1729 19 7 13.3729 -4.6051 4.2129 20 14 12.8967 -6.1929 6.4328 21 1 11.8510 -7.2459 6.3776 22 1 14.2211 -6.7937 6.1320 23 1 12.9231 -5.5921 7.7905 24 6 9.5984 -2.5342 4.4431 25 16 2.5209 -1.4372 -0.0051 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.8669 2.0895 -0.0004 30 1 4.3721 1.6349 0.0002 31 1 6.0387 -0.2719 -0.5128 32 1 5.4134 -1.9384 -0.5112 33 1 5.2111 -1.8602 1.9590 34 1 5.8363 -0.1938 1.9574 35 1 7.9490 -0.9881 0.9299 36 1 7.3231 -2.6544 0.9316 37 1 9.5169 -3.1818 1.2428 38 1 10.5609 -1.8238 1.7634 39 1 10.5157 -4.7018 2.8259 40 1 11.9326 -3.7138 2.3364 41 1 12.8919 -2.3381 4.0899 42 1 14.2061 -5.0989 4.1592 43 1 9.6487 -1.5853 4.9772 44 1 8.9985 -3.2482 5.0074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -73.702122 kcal Electronic energy + Delta-G solvation = -24220.317502 eV Core-core repulsion = 20649.354064 eV Total energy + Delta-G solvation = -3570.963438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55382 -38.34166 -37.36292 -35.00860 -34.31263 -32.23466 -32.04452 -29.96354 -28.95535 -28.13087 -25.70868 -24.64219 -23.19000 -22.37126 -21.53831 -19.70815 -19.06012 -18.60779 -17.30320 -17.07689 -16.45866 -15.80723 -15.46950 -15.05712 -14.92615 -14.48381 -14.30824 -14.20287 -13.66984 -13.53131 -13.25454 -13.01799 -12.84892 -12.70935 -12.14557 -12.11846 -12.03821 -11.76654 -11.52615 -11.48013 -11.42464 -11.35595 -11.28530 -10.93029 -10.88902 -10.69442 -10.62465 -10.52214 -10.12855 -9.47304 -9.29571 -8.68700 -8.63579 -8.59260 -8.24916 -8.00895 -6.30409 -4.37834 0.80530 1.42130 1.82257 2.55942 3.08294 3.21025 3.25583 3.29169 3.54859 4.25616 4.52878 4.63123 4.80365 4.87896 4.96491 4.97794 5.12222 5.18823 5.26333 5.34833 5.44059 5.47675 5.54193 5.56667 5.62943 5.67503 5.75427 5.90070 5.94921 6.00123 6.09009 6.14388 6.22990 6.28754 6.37376 6.44543 6.69099 6.89355 6.96096 7.27720 7.33089 7.71358 8.00816 8.12817 8.62705 8.66418 9.28359 9.37425 10.77104 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.002039 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.554732 B =13730.200690 C =13960.902121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.188 4.188 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.166 4.166 6 C -0.051 4.051 7 C -0.097 4.097 8 C -0.135 4.135 9 C 0.519 3.481 10 O -0.556 6.556 11 N -0.610 5.610 12 C 0.095 3.905 13 C -0.135 4.135 14 C 0.247 3.753 15 O -0.586 6.586 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.122 3.878 25 S 0.094 5.906 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.382 0.618 42 H 0.268 0.732 43 H 0.060 0.940 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.256 6.927 -13.367 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.305 4.305 3 C -0.168 4.168 4 C -0.170 4.170 5 C -0.283 4.283 6 C -0.090 4.090 7 C -0.136 4.136 8 C -0.175 4.175 9 C 0.308 3.692 10 O -0.435 6.435 11 N -0.343 5.343 12 C -0.028 4.028 13 C -0.173 4.173 14 C 0.206 3.794 15 O -0.394 6.394 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.000 4.000 25 S 0.358 5.642 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.232 0.768 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.355 5.849 -12.818 23.139 hybrid contribution 1.190 0.399 0.435 1.328 sum -17.165 6.248 -12.383 22.068 Atomic orbital electron populations 1.20314 0.87999 1.03108 1.02557 1.24461 0.99879 0.95839 1.10336 1.20051 0.92975 0.99107 1.04634 1.20078 0.96209 0.95995 1.04699 1.24468 0.98620 0.96382 1.08830 1.20223 0.89282 1.01446 0.98037 1.21340 0.94564 1.02844 0.94805 1.21633 0.97825 1.03277 0.94776 1.20220 0.80429 0.77256 0.91298 1.90665 1.54399 1.51730 1.46748 1.48691 1.12754 1.63291 1.09517 1.22512 0.90411 0.98889 0.90994 1.23296 0.98585 0.96934 0.98510 1.19471 0.83664 0.84636 0.91590 1.86137 1.21318 1.38233 1.93761 1.21476 1.04399 1.18375 1.13061 0.91843 1.24983 0.95710 0.96838 0.95484 1.69682 1.09877 1.42141 1.31863 0.86471 0.77501 0.81375 0.81618 1.20066 1.21109 1.19985 1.22056 0.94492 1.00377 0.83032 1.84287 0.96745 1.09557 1.73566 0.90911 0.91369 0.90636 0.84597 0.84371 0.89789 0.90663 0.90997 0.90808 0.89090 0.89127 0.92124 0.91952 0.91472 0.89360 0.76799 0.92164 0.92193 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.38 36.00 0.37 -0.16 16 2 C -0.19 -1.76 6.51 -36.00 -0.23 -1.99 16 3 C -0.14 -1.29 10.05 -41.21 -0.41 -1.71 16 4 C -0.14 -1.40 10.05 -41.21 -0.41 -1.82 16 5 C -0.17 -1.74 5.76 -36.00 -0.21 -1.94 16 6 C -0.05 -0.48 5.71 -27.88 -0.16 -0.64 16 7 C -0.10 -1.18 4.49 -26.73 -0.12 -1.30 16 8 C -0.14 -1.73 4.71 -27.88 -0.13 -1.86 16 9 C 0.52 9.53 7.85 -10.98 -0.09 9.44 16 10 O -0.56 -12.11 16.31 5.55 0.09 -12.02 16 11 N -0.61 -11.92 3.33 -170.51 -0.57 -12.49 16 12 C 0.09 1.65 6.68 -2.53 -0.02 1.64 16 13 C -0.13 -2.84 5.47 -24.58 -0.13 -2.97 16 14 C 0.25 5.90 0.85 -89.93 -0.08 5.82 16 15 O -0.59 -14.55 13.07 -35.23 -0.46 -15.01 16 16 C -0.53 -13.93 8.22 -34.44 -0.28 -14.21 16 17 H 0.06 1.66 7.58 -52.49 -0.40 1.27 16 18 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 19 N -0.90 -22.71 10.67 55.43 0.59 -22.12 16 20 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.12 2.77 6.23 -3.06 -0.02 2.75 16 25 S 0.09 0.96 23.31 -107.50 -2.51 -1.55 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.09 1.00 7.85 -51.93 -0.41 0.60 16 37 H 0.06 0.87 7.49 -51.93 -0.39 0.48 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 40 H 0.09 1.93 7.54 -51.93 -0.39 1.53 16 41 H 0.38 9.43 7.46 45.56 0.34 9.77 16 42 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 43 H 0.06 1.42 8.07 -51.92 -0.42 1.00 16 44 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -29.20 375.07 -10.50 -39.70 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.26 Total: 9.90 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.02 Total: -7.20 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.02 Total: -34.60 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.37 Total: -27.04 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.20 -10.50 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.005 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds