Wall clock time and date at job start Tue Mar 31 2020 14:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38124 * 120.03651 * 2 1 4 4 C 1.50705 * 119.96242 * 0.03996 * 3 2 1 5 5 S 1.81396 * 109.47234 * 269.97753 * 4 3 2 6 6 C 1.81402 * 101.92009 * 180.02562 * 5 4 3 7 7 O 1.42105 * 108.58016 * 294.48600 * 5 4 3 8 8 O 1.42100 * 108.57982 * 65.51431 * 5 4 3 9 9 C 1.38261 * 120.07648 * 180.02562 * 3 2 1 10 10 C 1.38312 * 120.14875 * 359.97438 * 9 3 2 11 11 C 1.38083 * 120.07070 * 359.97438 * 10 9 3 12 12 C 1.38888 * 120.03953 * 180.02562 * 2 1 3 13 13 N 1.39675 * 120.07263 * 359.95834 * 12 2 1 14 14 C 1.46497 * 120.00028 * 175.68377 * 13 12 2 15 15 C 1.53001 * 109.47364 * 185.23956 * 14 13 12 16 16 C 1.50702 * 115.54942 * 268.72483 * 15 14 13 17 17 H 1.07998 * 120.00479 * 122.02308 * 16 15 14 18 18 C 1.37883 * 119.99928 * 302.02070 * 16 15 14 19 19 N 1.31516 * 120.00242 * 162.08707 * 18 16 15 20 20 Si 1.86800 * 119.99687 * 342.08623 * 18 16 15 21 21 H 1.48502 * 109.46997 * 84.35055 * 20 18 16 22 22 H 1.48496 * 109.47114 * 204.34640 * 20 18 16 23 23 H 1.48496 * 109.47212 * 324.34893 * 20 18 16 24 24 C 1.52993 * 117.50277 * 123.01297 * 15 14 13 25 25 C 1.52996 * 60.00242 * 252.51101 * 24 15 14 26 26 H 1.08998 * 109.47341 * 267.48139 * 1 2 3 27 27 H 1.09001 * 109.47213 * 27.48414 * 1 2 3 28 28 H 1.09005 * 109.47054 * 147.48104 * 1 2 3 29 29 H 1.08992 * 109.47066 * 29.97878 * 4 3 2 30 30 H 1.09002 * 109.47033 * 149.97864 * 4 3 2 31 31 H 1.08994 * 109.47169 * 60.00040 * 6 5 4 32 32 H 1.09005 * 109.47101 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47114 * 299.99596 * 6 5 4 34 34 H 1.08001 * 119.92801 * 180.28166 * 9 3 2 35 35 H 1.07997 * 119.96149 * 180.02562 * 10 9 3 36 36 H 1.08004 * 120.03378 * 180.02562 * 11 10 9 37 37 H 0.97009 * 120.00104 * 355.68214 * 13 12 2 38 38 H 1.08993 * 109.47283 * 305.24034 * 14 13 12 39 39 H 1.09002 * 109.47290 * 65.24373 * 14 13 12 40 40 H 0.97000 * 120.00022 * 180.02562 * 19 18 16 41 41 H 1.09000 * 117.49443 * 359.97438 * 24 15 14 42 42 H 1.08996 * 117.50391 * 145.02057 * 24 15 14 43 43 H 1.09001 * 117.50304 * 252.51419 * 25 24 15 44 44 H 1.09002 * 117.52239 * 107.47326 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 1.4448 2.5009 0.0009 5 16 1.1420 3.0255 -1.7089 6 6 0.2436 4.5831 -1.4694 7 8 2.3912 3.3136 -2.3221 8 8 0.2680 2.0878 -2.3222 9 6 3.5810 1.1967 -0.0005 10 6 4.2765 0.0012 -0.0005 11 6 3.5915 -1.1978 0.0005 12 6 2.2022 -1.2023 -0.0005 13 7 1.5062 -2.4133 -0.0002 14 6 2.2380 -3.6788 -0.0962 15 6 1.2433 -4.8361 -0.2063 16 6 0.8257 -5.4606 1.1001 17 1 -0.2181 -5.4891 1.3758 18 6 1.7763 -5.9957 1.9435 19 7 1.4851 -6.2164 3.2069 20 14 3.4778 -6.4072 1.2915 21 1 4.3260 -5.1886 1.3180 22 1 4.0933 -7.4572 2.1422 23 1 3.3667 -6.9028 -0.1039 24 6 1.3608 -5.7554 -1.4236 25 6 0.1983 -4.7659 -1.3216 26 1 -0.3634 -0.0452 1.0266 27 1 -0.3634 0.9117 -0.4743 28 1 -0.3633 -0.8666 -0.5525 29 1 0.4926 2.3703 0.5149 30 1 2.0340 3.2603 0.5150 31 1 0.8685 5.2810 -0.9122 32 1 -0.0047 5.0123 -2.4402 33 1 -0.6734 4.3916 -0.9121 34 1 4.1191 2.1331 0.0041 35 1 5.3564 0.0055 -0.0005 36 1 4.1352 -2.1310 0.0009 37 1 0.5383 -2.4164 0.0637 38 1 2.8764 -3.6632 -0.9795 39 1 2.8527 -3.8115 0.7940 40 1 2.1540 -6.5924 3.8002 41 1 2.1465 -5.5354 -2.1463 42 1 1.1363 -6.8122 -1.2798 43 1 -0.7911 -5.1717 -1.1105 44 1 0.2193 -3.8950 -1.9767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594704735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:01 Heat of formation + Delta-G solvation = -16.301028 kcal Electronic energy + Delta-G solvation = -25480.739214 eV Core-core repulsion = 21912.264875 eV Total energy + Delta-G solvation = -3568.474339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.68218 -37.41756 -37.11981 -36.12848 -34.70243 -33.26448 -32.24258 -30.65117 -29.88567 -27.43577 -26.73388 -26.10952 -24.75797 -21.70706 -20.97851 -20.71352 -19.10756 -18.95167 -17.18884 -16.88572 -16.71417 -16.27511 -15.83904 -15.62004 -15.05379 -14.95084 -14.14850 -13.97483 -13.80641 -13.58943 -13.52704 -13.38875 -13.00960 -12.87458 -12.71232 -12.65162 -12.25700 -12.21386 -12.15098 -11.95198 -11.88588 -11.32264 -11.14207 -11.08372 -11.01225 -10.74509 -10.71504 -10.55562 -10.28124 -9.66118 -9.58412 -9.17600 -8.84042 -8.41003 -8.39341 -6.90033 -6.23216 -4.18253 -0.31168 1.57992 1.89035 2.55005 3.20678 3.32778 3.40115 3.45076 3.75051 3.91607 4.07729 4.34687 4.38836 4.42688 4.45837 4.77948 4.82452 5.11799 5.19807 5.24386 5.27594 5.30158 5.36765 5.62009 5.71618 5.84633 5.88216 5.92852 5.97511 6.01961 6.07874 6.22229 6.37426 6.42139 6.47692 6.61030 6.69269 6.70117 6.80441 6.98319 7.06539 7.14792 7.66215 7.84646 8.29682 8.39677 8.83134 9.42938 10.88362 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.003332 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.993592 B = 8400.544497 C = 8816.984776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.151 4.151 3 C -0.051 4.051 4 C -0.558 4.558 5 S 2.412 3.588 6 C -0.663 4.663 7 O -0.934 6.934 8 O -0.928 6.928 9 C -0.173 4.173 10 C -0.074 4.074 11 C -0.190 4.190 12 C 0.232 3.768 13 N -0.720 5.720 14 C 0.150 3.850 15 C -0.011 4.011 16 C -0.493 4.493 17 H 0.076 0.924 18 C 0.084 3.916 19 N -0.884 5.884 20 Si 0.864 3.136 21 H -0.274 1.274 22 H -0.290 1.290 23 H -0.254 1.254 24 C -0.191 4.191 25 C -0.181 4.181 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.404 0.596 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 20.358 -6.439 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.157 4.157 3 C -0.053 4.053 4 C -0.686 4.686 5 S 2.595 3.405 6 C -0.812 4.812 7 O -0.931 6.931 8 O -0.925 6.925 9 C -0.194 4.194 10 C -0.093 4.093 11 C -0.214 4.214 12 C 0.124 3.876 13 N -0.346 5.346 14 C 0.026 3.974 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.094 0.906 18 C -0.120 4.120 19 N -0.520 5.520 20 Si 0.690 3.310 21 H -0.200 1.200 22 H -0.217 1.217 23 H -0.178 1.178 24 C -0.229 4.229 25 C -0.219 4.219 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.240 0.760 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.388 19.686 -7.059 20.917 hybrid contribution 0.390 0.101 0.665 0.777 sum 0.778 19.787 -6.394 20.809 Atomic orbital electron populations 1.20760 0.91236 1.03382 1.01876 1.19134 0.95802 0.91059 1.09679 1.18290 0.93165 0.90279 1.03607 1.29262 1.10002 1.05183 1.24151 1.08342 0.76312 0.77395 0.78476 1.30367 1.15388 1.23381 1.12040 1.93590 1.41812 1.84773 1.72950 1.93608 1.66903 1.59084 1.72877 1.20649 0.92669 0.98263 1.07834 1.20778 0.99326 0.91679 0.97493 1.20775 0.92424 0.98800 1.09389 1.17694 0.91364 0.86003 0.92525 1.44959 1.09078 1.02166 1.78379 1.21367 0.94225 0.82341 0.99424 1.19566 0.96289 0.94645 0.90714 1.20215 0.95333 1.38412 0.99018 0.90585 1.24908 0.98457 0.94728 0.93949 1.69981 1.35729 1.42761 1.03481 0.87096 0.84704 0.78636 0.80533 1.19992 1.21681 1.17819 1.23105 1.00111 0.97101 1.02606 1.22736 0.94742 1.00925 1.03466 0.91420 0.91194 0.91295 0.84180 0.84332 0.85473 0.85389 0.85361 0.86259 0.86128 0.85936 0.75954 0.94079 0.91814 0.92424 0.91237 0.89364 0.89689 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 8.73 36.00 0.31 -1.25 16 2 C -0.15 -2.34 5.90 -104.42 -0.62 -2.95 16 3 C -0.05 -0.69 5.14 -104.65 -0.54 -1.23 16 4 C -0.56 -4.76 5.22 36.01 0.19 -4.58 16 5 S 2.41 22.44 5.33 -107.50 -0.57 21.87 16 6 C -0.66 -3.05 10.62 101.05 1.07 -1.97 16 7 O -0.93 -12.12 18.10 -57.83 -1.05 -13.16 16 8 O -0.93 -12.15 16.40 -57.83 -0.95 -13.10 16 9 C -0.17 -2.36 9.70 -39.55 -0.38 -2.74 16 10 C -0.07 -1.08 10.04 -39.61 -0.40 -1.47 16 11 C -0.19 -3.21 9.29 -39.38 -0.37 -3.58 16 12 C 0.23 4.09 6.63 -83.79 -0.56 3.53 16 13 N -0.72 -13.54 5.45 -58.64 -0.32 -13.86 16 14 C 0.15 3.11 4.13 -4.04 -0.02 3.10 16 15 C -0.01 -0.24 0.94 -155.66 -0.15 -0.39 16 16 C -0.49 -13.15 9.35 -34.44 -0.32 -13.47 16 17 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 18 C 0.08 2.30 5.26 -17.82 -0.09 2.21 16 19 N -0.88 -25.97 13.96 55.43 0.77 -25.20 16 20 Si 0.86 20.57 25.49 -169.99 -4.33 16.24 16 21 H -0.27 -6.32 6.64 56.52 0.38 -5.95 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.25 -5.79 6.35 56.52 0.36 -5.43 16 24 C -0.19 -3.90 8.46 -26.74 -0.23 -4.12 16 25 C -0.18 -3.53 9.46 -26.73 -0.25 -3.79 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.80 4.77 -51.93 -0.25 0.55 16 28 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 29 H 0.14 0.88 6.65 -51.93 -0.35 0.53 16 30 H 0.14 0.73 8.08 -51.92 -0.42 0.31 16 31 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 2.08 6.76 -52.48 -0.35 1.72 16 37 H 0.40 7.37 6.31 -40.82 -0.26 7.11 16 38 H 0.04 0.80 7.59 -51.93 -0.39 0.40 16 39 H 0.06 1.45 5.46 -51.93 -0.28 1.17 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 41 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 42 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -34.63 363.54 -9.81 -44.44 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.50 Total: 9.99 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: -2.34 Total: -32.69 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.45 Total: -39.06 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.99 Total: -26.26 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.33 Total: 16.24 kcal Atomic # 16 Polarization: 22.44 SS G_CDS: -0.57 Total: 21.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.63 -9.81 -44.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.139 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds