Wall clock time and date at job start Tue Mar 31 2020 14:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38124 * 120.03651 * 2 1 4 4 C 1.50705 * 119.96242 * 0.03996 * 3 2 1 5 5 S 1.81396 * 109.47234 * 269.97753 * 4 3 2 6 6 C 1.81402 * 101.92009 * 180.02562 * 5 4 3 7 7 O 1.42105 * 108.58016 * 294.48600 * 5 4 3 8 8 O 1.42100 * 108.57982 * 65.51431 * 5 4 3 9 9 C 1.38261 * 120.07648 * 180.02562 * 3 2 1 10 10 C 1.38312 * 120.14875 * 359.97438 * 9 3 2 11 11 C 1.38083 * 120.07070 * 359.97438 * 10 9 3 12 12 C 1.38888 * 120.03953 * 180.02562 * 2 1 3 13 13 N 1.39675 * 120.07263 * 359.95834 * 12 2 1 14 14 C 1.46497 * 120.00028 * 175.68377 * 13 12 2 15 15 C 1.53001 * 109.47364 * 185.23956 * 14 13 12 16 16 C 1.50702 * 115.54942 * 268.72483 * 15 14 13 17 17 H 1.07998 * 120.00479 * 122.02308 * 16 15 14 18 18 C 1.37883 * 119.99928 * 302.02070 * 16 15 14 19 19 N 1.31516 * 120.00242 * 162.08707 * 18 16 15 20 20 Si 1.86800 * 119.99687 * 342.08623 * 18 16 15 21 21 H 1.48502 * 109.46997 * 84.35055 * 20 18 16 22 22 H 1.48496 * 109.47114 * 204.34640 * 20 18 16 23 23 H 1.48496 * 109.47212 * 324.34893 * 20 18 16 24 24 C 1.52993 * 117.50277 * 123.01297 * 15 14 13 25 25 C 1.52996 * 60.00242 * 252.51101 * 24 15 14 26 26 H 1.08998 * 109.47341 * 267.48139 * 1 2 3 27 27 H 1.09001 * 109.47213 * 27.48414 * 1 2 3 28 28 H 1.09005 * 109.47054 * 147.48104 * 1 2 3 29 29 H 1.08992 * 109.47066 * 29.97878 * 4 3 2 30 30 H 1.09002 * 109.47033 * 149.97864 * 4 3 2 31 31 H 1.08994 * 109.47169 * 60.00040 * 6 5 4 32 32 H 1.09005 * 109.47101 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47114 * 299.99596 * 6 5 4 34 34 H 1.08001 * 119.92801 * 180.28166 * 9 3 2 35 35 H 1.07997 * 119.96149 * 180.02562 * 10 9 3 36 36 H 1.08004 * 120.03378 * 180.02562 * 11 10 9 37 37 H 0.97009 * 120.00104 * 355.68214 * 13 12 2 38 38 H 1.08993 * 109.47283 * 305.24034 * 14 13 12 39 39 H 1.09002 * 109.47290 * 65.24373 * 14 13 12 40 40 H 0.97000 * 120.00022 * 180.02562 * 19 18 16 41 41 H 1.09000 * 117.49443 * 359.97438 * 24 15 14 42 42 H 1.08996 * 117.50391 * 145.02057 * 24 15 14 43 43 H 1.09001 * 117.50304 * 252.51419 * 25 24 15 44 44 H 1.09002 * 117.52239 * 107.47326 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 1.4448 2.5009 0.0009 5 16 1.1420 3.0255 -1.7089 6 6 0.2436 4.5831 -1.4694 7 8 2.3912 3.3136 -2.3221 8 8 0.2680 2.0878 -2.3222 9 6 3.5810 1.1967 -0.0005 10 6 4.2765 0.0012 -0.0005 11 6 3.5915 -1.1978 0.0005 12 6 2.2022 -1.2023 -0.0005 13 7 1.5062 -2.4133 -0.0002 14 6 2.2380 -3.6788 -0.0962 15 6 1.2433 -4.8361 -0.2063 16 6 0.8257 -5.4606 1.1001 17 1 -0.2181 -5.4891 1.3758 18 6 1.7763 -5.9957 1.9435 19 7 1.4851 -6.2164 3.2069 20 14 3.4778 -6.4072 1.2915 21 1 4.3260 -5.1886 1.3180 22 1 4.0933 -7.4572 2.1422 23 1 3.3667 -6.9028 -0.1039 24 6 1.3608 -5.7554 -1.4236 25 6 0.1983 -4.7659 -1.3216 26 1 -0.3634 -0.0452 1.0266 27 1 -0.3634 0.9117 -0.4743 28 1 -0.3633 -0.8666 -0.5525 29 1 0.4926 2.3703 0.5149 30 1 2.0340 3.2603 0.5150 31 1 0.8685 5.2810 -0.9122 32 1 -0.0047 5.0123 -2.4402 33 1 -0.6734 4.3916 -0.9121 34 1 4.1191 2.1331 0.0041 35 1 5.3564 0.0055 -0.0005 36 1 4.1352 -2.1310 0.0009 37 1 0.5383 -2.4164 0.0637 38 1 2.8764 -3.6632 -0.9795 39 1 2.8527 -3.8115 0.7940 40 1 2.1540 -6.5924 3.8002 41 1 2.1465 -5.5354 -2.1463 42 1 1.1363 -6.8122 -1.2798 43 1 -0.7911 -5.1717 -1.1105 44 1 0.2193 -3.8950 -1.9767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594704735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:01 Heat of formation + Delta-G solvation = -41.058102 kcal Electronic energy + Delta-G solvation = -25481.812761 eV Core-core repulsion = 21912.264875 eV Total energy + Delta-G solvation = -3569.547887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85435 -39.01995 -37.92708 -36.93561 -36.01681 -34.35246 -34.30485 -31.75494 -30.35893 -28.65252 -28.14694 -27.46094 -26.37644 -23.28844 -22.15919 -21.94969 -20.82710 -19.71342 -18.74342 -17.97089 -17.55313 -17.40504 -16.93094 -16.74354 -16.62672 -16.12352 -15.58980 -15.37292 -14.93126 -14.86474 -14.73214 -14.20053 -14.01466 -13.91039 -13.86337 -13.80016 -13.60775 -13.17021 -13.10699 -12.98900 -12.95760 -12.83994 -12.66891 -12.23624 -12.18092 -12.09020 -12.07186 -11.88207 -11.61927 -11.50826 -11.10943 -10.86482 -10.57518 -10.35839 -9.48555 -8.36422 -8.21972 -6.34190 -0.97557 0.47248 0.72225 1.31158 1.37476 1.49462 1.94173 2.33926 2.50053 2.76705 2.91736 2.95639 3.15551 3.39203 3.57259 3.90429 3.99479 4.06201 4.15456 4.17995 4.28562 4.29078 4.35191 4.43957 4.48327 4.60065 4.62228 4.68434 4.79411 4.83226 4.85871 4.90108 4.98049 5.02629 5.06705 5.29193 5.33263 5.44755 5.46528 5.57565 5.65808 5.67350 5.99591 6.26561 6.47666 6.66801 6.92750 7.29983 8.79193 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.003332 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.993592 B = 8400.544497 C = 8816.984776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.165 4.165 3 C -0.056 4.056 4 C -0.560 4.560 5 S 2.405 3.595 6 C -0.635 4.635 7 O -0.981 6.981 8 O -0.978 6.978 9 C -0.175 4.175 10 C -0.080 4.080 11 C -0.215 4.215 12 C 0.201 3.799 13 N -0.729 5.729 14 C 0.164 3.836 15 C -0.034 4.034 16 C -0.493 4.493 17 H 0.033 0.967 18 C 0.031 3.969 19 N -0.935 5.935 20 Si 0.921 3.079 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.233 1.233 24 C -0.182 4.182 25 C -0.162 4.162 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.166 0.834 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.402 0.598 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 23.811 -7.605 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.171 4.171 3 C -0.058 4.058 4 C -0.687 4.687 5 S 2.594 3.406 6 C -0.788 4.788 7 O -0.978 6.978 8 O -0.975 6.975 9 C -0.196 4.196 10 C -0.099 4.099 11 C -0.239 4.239 12 C 0.096 3.904 13 N -0.357 5.357 14 C 0.040 3.960 15 C -0.035 4.035 16 C -0.530 4.530 17 H 0.052 0.948 18 C -0.168 4.168 19 N -0.574 5.574 20 Si 0.745 3.255 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.156 1.156 24 C -0.220 4.220 25 C -0.199 4.199 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.184 0.816 30 H 0.196 0.804 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.884 23.124 -8.265 24.573 hybrid contribution 0.125 -0.754 1.067 1.312 sum 1.009 22.370 -7.198 23.522 Atomic orbital electron populations 1.20830 0.90241 1.03939 1.02457 1.19477 0.96857 0.91172 1.09547 1.18789 0.93668 0.91841 1.01510 1.29352 1.11473 1.03562 1.24340 1.08100 0.75544 0.78774 0.78222 1.30109 1.15924 1.18998 1.13723 1.93535 1.44283 1.85730 1.74287 1.93550 1.67449 1.62218 1.74299 1.21124 0.93183 0.99054 1.06285 1.21117 1.00674 0.91310 0.96764 1.20893 0.92472 0.99468 1.11034 1.18015 0.91916 0.86244 0.94217 1.44812 1.08832 1.02083 1.79987 1.21018 0.93630 0.82721 0.98667 1.19416 0.98752 0.95952 0.89425 1.20371 0.93389 1.38069 1.01137 0.94839 1.25684 1.02534 0.94677 0.93892 1.70113 1.37291 1.44949 1.05012 0.86165 0.80064 0.78510 0.80736 1.18966 1.22100 1.15595 1.23134 1.00995 0.96595 1.01273 1.22744 0.94121 1.01261 1.01800 0.90564 0.89069 0.92540 0.81638 0.80384 0.82343 0.84468 0.82569 0.83382 0.83830 0.86965 0.76166 0.92724 0.94594 0.92489 0.88756 0.90033 0.90025 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.73 71.24 0.62 -2.48 16 2 C -0.16 -5.01 5.90 -19.74 -0.12 -5.13 16 3 C -0.06 -1.40 5.14 -19.88 -0.10 -1.51 16 4 C -0.56 -7.44 5.22 71.24 0.37 -7.07 16 5 S 2.41 38.32 5.33 -56.49 -0.30 38.02 16 6 C -0.63 -2.51 10.62 113.37 1.20 -1.30 16 7 O -0.98 -23.79 18.10 -127.37 -2.30 -26.09 16 8 O -0.98 -24.45 16.40 -127.37 -2.09 -26.54 16 9 C -0.18 -4.41 9.70 22.29 0.22 -4.20 16 10 C -0.08 -2.25 10.04 22.25 0.22 -2.03 16 11 C -0.22 -7.34 9.29 22.40 0.21 -7.14 16 12 C 0.20 7.20 6.63 38.21 0.25 7.45 16 13 N -0.73 -28.09 5.45 -339.44 -1.85 -29.93 16 14 C 0.16 6.87 4.13 86.38 0.36 7.23 16 15 C -0.03 -1.53 0.94 -52.93 -0.05 -1.58 16 16 C -0.49 -27.33 9.35 25.60 0.24 -27.09 16 17 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 18 C 0.03 1.79 5.26 84.66 0.44 2.23 16 19 N -0.94 -57.50 13.96 21.45 0.30 -57.20 16 20 Si 0.92 43.19 25.49 68.60 1.75 44.94 16 21 H -0.26 -11.91 6.64 99.48 0.66 -11.25 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.23 -10.02 6.35 99.48 0.63 -9.39 16 24 C -0.18 -7.16 8.46 30.59 0.26 -6.90 16 25 C -0.16 -6.21 9.46 30.59 0.29 -5.92 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 27 H 0.09 1.93 4.77 -2.39 -0.01 1.92 16 28 H 0.06 1.60 6.75 -2.38 -0.02 1.59 16 29 H 0.17 1.35 6.65 -2.39 -0.02 1.34 16 30 H 0.18 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.11 3.92 6.76 -2.91 -0.02 3.90 16 37 H 0.40 15.17 6.31 -92.70 -0.58 14.59 16 38 H 0.05 2.10 7.59 -2.39 -0.02 2.08 16 39 H 0.04 1.68 5.46 -2.39 -0.01 1.67 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.09 3.26 8.03 -2.39 -0.02 3.25 16 42 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -80.77 363.54 0.23 -80.54 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.30 Total: 31.69 kcal Atomic # 6 Polarization: -59.84 SS G_CDS: 4.42 Total: -55.42 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.55 Total: -87.13 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -4.39 Total: -52.63 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.75 Total: 44.94 kcal Atomic # 16 Polarization: 38.32 SS G_CDS: -0.30 Total: 38.02 kcal Total: -80.77 0.23 -80.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.484 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds