Wall clock time and date at job start Tue Mar 31 2020 14:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38253 * 120.00032 * 2 1 4 4 C 1.38220 * 119.99792 * 180.25780 * 3 2 1 5 5 C 1.38260 * 119.99806 * 359.76355 * 4 3 2 6 6 C 1.38210 * 120.00333 * 0.02562 * 5 4 3 7 7 C 1.38220 * 119.99976 * 179.79129 * 2 1 3 8 8 C 1.50706 * 119.99807 * 359.97438 * 7 2 1 9 9 S 1.81403 * 109.46916 * 269.72478 * 8 7 2 10 10 O 1.42099 * 110.53972 * 68.37711 * 9 8 7 11 11 O 1.42099 * 110.54290 * 291.62552 * 9 8 7 12 12 N 1.65601 * 104.44698 * 180.02562 * 9 8 7 13 13 C 1.46931 * 120.60529 * 269.97811 * 12 9 8 14 14 C 1.53196 * 108.77131 * 233.58060 * 13 12 9 15 15 C 1.53039 * 109.33748 * 305.41286 * 14 13 12 16 16 C 1.53045 * 109.53694 * 61.35198 * 15 14 13 17 17 H 1.08993 * 109.49902 * 58.61908 * 16 15 14 18 18 C 1.50702 * 109.49612 * 178.68303 * 16 15 14 19 19 H 1.07998 * 119.99756 * 119.99608 * 18 16 15 20 20 C 1.37881 * 119.99853 * 299.99779 * 18 16 15 21 21 N 1.31513 * 119.99947 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99699 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47006 * 90.00068 * 22 20 18 24 24 H 1.48501 * 109.46918 * 209.99876 * 22 20 18 25 25 H 1.48501 * 109.47160 * 329.99603 * 22 20 18 26 26 C 1.46928 * 120.62733 * 90.00512 * 12 9 8 27 27 H 1.09004 * 109.46737 * 270.20562 * 1 2 3 28 28 H 1.08997 * 109.46726 * 30.20902 * 1 2 3 29 29 H 1.09000 * 109.46901 * 150.21329 * 1 2 3 30 30 H 1.07994 * 120.00197 * 0.04367 * 3 2 1 31 31 H 1.07994 * 119.99570 * 179.78984 * 4 3 2 32 32 H 1.07997 * 119.99582 * 180.02562 * 5 4 3 33 33 H 1.07994 * 120.00163 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46694 * 149.73084 * 8 7 2 35 35 H 1.08998 * 109.47391 * 29.72192 * 8 7 2 36 36 H 1.08996 * 109.56502 * 113.80754 * 13 12 9 37 37 H 1.09001 * 109.61713 * 353.38176 * 13 12 9 38 38 H 1.09002 * 109.49815 * 185.44599 * 14 13 12 39 39 H 1.09000 * 109.49595 * 65.37996 * 14 13 12 40 40 H 1.09001 * 109.45915 * 181.36781 * 15 14 13 41 41 H 1.08998 * 109.46049 * 301.34328 * 15 14 13 42 42 H 0.97000 * 119.99195 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.58597 * 6.59731 * 26 12 9 44 44 H 1.09001 * 109.69741 * 246.24550 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0054 5 6 4.2717 -0.0002 -0.0058 6 6 3.5807 -1.1971 -0.0014 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0097 9 16 1.1500 -3.0232 1.7221 10 8 0.2297 -2.1473 2.3585 11 8 2.3722 -3.3844 2.3507 12 7 0.3251 -4.4524 1.5830 13 6 -1.1430 -4.4661 1.5245 14 6 -1.6705 -5.4163 2.6042 15 6 -1.0210 -6.7912 2.4305 16 6 0.4952 -6.6656 2.5966 17 1 0.7207 -6.2576 3.5818 18 6 1.1307 -8.0249 2.4575 19 1 1.8576 -8.2041 1.6791 20 6 0.7841 -9.0399 3.3240 21 7 -0.1015 -8.8218 4.2715 22 14 1.5724 -10.7246 3.1521 23 1 2.8071 -10.7797 3.9753 24 1 0.6209 -11.7660 3.6165 25 1 1.9156 -10.9675 1.7279 26 6 1.0474 -5.7301 1.5164 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3633 -0.8919 -0.5105 30 1 1.6584 2.1326 0.0007 31 1 4.1204 2.1325 -0.0088 32 1 5.3517 -0.0002 -0.0096 33 1 4.1206 -2.1324 -0.0022 34 1 2.0314 -3.2625 -0.5056 35 1 0.4898 -2.3725 -0.4999 36 1 -1.4659 -4.8129 0.5430 37 1 -1.5258 -3.4613 1.7034 38 1 -2.7523 -5.5104 2.5090 39 1 -1.4250 -5.0198 3.5893 40 1 -1.4132 -7.4756 3.1827 41 1 -1.2466 -7.1764 1.4362 42 1 -0.3450 -9.5357 4.8813 43 1 2.1098 -5.5588 1.6896 44 1 0.9054 -6.1816 0.5345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:15 Heat of formation + Delta-G solvation = -57.006228 kcal Electronic energy + Delta-G solvation = -25905.937697 eV Core-core repulsion = 22335.698248 eV Total energy + Delta-G solvation = -3570.239449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73907 -37.70067 -36.87376 -35.61508 -33.68700 -33.30469 -32.39063 -31.10773 -30.08130 -27.99771 -26.71325 -25.11139 -23.61572 -22.36697 -21.67793 -21.10486 -19.49854 -18.29184 -17.41618 -16.74834 -16.29784 -16.20969 -15.92155 -15.36448 -15.14286 -14.61661 -14.01857 -13.89068 -13.51576 -13.37269 -13.30062 -13.19741 -12.92430 -12.79840 -12.61892 -12.44250 -12.24450 -12.15078 -11.73853 -11.70290 -11.33306 -11.28867 -11.17960 -10.97000 -10.95868 -10.83202 -10.69826 -10.21035 -9.92662 -9.78527 -9.35643 -9.01436 -8.84219 -8.78151 -8.41176 -8.13250 -5.99568 -4.07155 0.32445 1.17000 1.21255 2.97494 3.30881 3.37635 3.39916 3.52857 4.03564 4.20568 4.34073 4.43230 4.62533 4.72382 4.81067 4.95990 5.10100 5.19338 5.28904 5.31336 5.35303 5.48843 5.55281 5.67865 5.69270 5.78924 5.81786 6.02248 6.03373 6.22066 6.23074 6.29223 6.34060 6.36705 6.47924 6.63247 6.64489 6.77085 6.89700 7.02429 7.24311 7.45893 7.72180 7.98335 8.11197 8.40399 8.96230 9.57435 11.05872 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.003420 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.735994 B = 8185.563743 C = 8952.381534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.598 4.598 9 S 2.602 3.398 10 O -0.955 6.955 11 O -0.946 6.946 12 N -0.992 5.992 13 C 0.121 3.879 14 C -0.131 4.131 15 C -0.110 4.110 16 C 0.042 3.958 17 H 0.032 0.968 18 C -0.516 4.516 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.121 3.879 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 17.384 -11.145 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.091 4.091 8 C -0.723 4.723 9 S 2.695 3.305 10 O -0.945 6.945 11 O -0.936 6.936 12 N -0.832 5.832 13 C -0.004 4.004 14 C -0.170 4.170 15 C -0.148 4.148 16 C 0.022 3.978 17 H 0.050 0.950 18 C -0.555 4.555 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.002 4.002 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.393 17.697 -10.222 20.484 hybrid contribution 0.384 -1.137 -0.852 1.471 sum 1.777 16.560 -11.074 20.001 Atomic orbital electron populations 1.21067 0.90752 1.02846 1.04146 1.19872 0.96522 0.92436 0.98276 1.21031 0.94315 0.97334 1.01261 1.21224 0.94311 0.98212 0.99254 1.21150 1.00192 0.92192 1.00750 1.21204 0.93131 0.99195 0.98539 1.18882 0.93609 0.91949 1.04660 1.29922 1.09624 1.03989 1.28795 1.05351 0.74419 0.73639 0.77054 1.93531 1.63132 1.66120 1.71762 1.93589 1.46490 1.81875 1.71678 1.57697 1.15006 1.21374 1.89078 1.21450 0.78597 1.00655 0.99724 1.21937 0.98782 0.98154 0.98096 1.21595 0.98124 0.93872 1.01236 1.18928 0.92255 0.93030 0.93562 0.94970 1.21093 1.23824 0.95215 1.15324 0.92452 1.24948 0.95039 0.98798 0.95086 1.69881 1.32046 1.32876 1.17797 0.86585 0.79150 0.83844 0.78329 1.20667 1.21301 1.19929 1.21867 0.95406 0.81893 1.01079 0.88996 0.91093 0.91340 0.85558 0.85714 0.85490 0.85079 0.84236 0.84229 0.92249 0.90275 0.92568 0.92227 0.88695 0.94630 0.92959 0.90283 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.51 36.01 0.34 -0.99 16 2 C -0.07 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 6 C -0.10 -1.23 9.70 -39.59 -0.38 -1.62 16 7 C -0.09 -1.14 5.14 -104.62 -0.54 -1.68 16 8 C -0.60 -7.26 5.90 36.01 0.21 -7.05 16 9 S 2.60 43.43 5.43 -107.50 -0.58 42.84 16 10 O -0.96 -17.25 15.99 -57.54 -0.92 -18.17 16 11 O -0.95 -19.16 16.58 -57.54 -0.95 -20.11 16 12 N -0.99 -17.45 3.22 -113.52 -0.37 -17.81 16 13 C 0.12 1.94 6.43 -3.71 -0.02 1.92 16 14 C -0.13 -2.45 6.08 -26.61 -0.16 -2.61 16 15 C -0.11 -2.49 4.96 -26.69 -0.13 -2.63 16 16 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 17 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 18 C -0.52 -13.79 8.56 -34.44 -0.29 -14.09 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.02 11.31 55.43 0.63 -24.40 16 22 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.12 2.45 5.65 -3.71 -0.02 2.43 16 27 H 0.09 1.03 7.63 -51.93 -0.40 0.63 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.07 0.62 5.94 -51.93 -0.31 0.32 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.14 1.45 8.09 -51.92 -0.42 1.03 16 35 H 0.14 1.37 5.94 -51.92 -0.31 1.06 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.13 6.86 -51.93 -0.36 0.78 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.08 1.61 6.86 -51.93 -0.36 1.25 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -32.49 361.15 -11.52 -44.01 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.65 Total: 2.36 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -3.10 Total: -30.09 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.26 Total: -42.21 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.87 Total: -38.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 43.43 SS G_CDS: -0.58 Total: 42.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.49 -11.52 -44.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.998 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds