Wall clock time and date at job start Tue Mar 31 2020 14:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38253 * 120.00032 * 2 1 4 4 C 1.38220 * 119.99792 * 180.25780 * 3 2 1 5 5 C 1.38260 * 119.99806 * 359.76355 * 4 3 2 6 6 C 1.38210 * 120.00333 * 0.02562 * 5 4 3 7 7 C 1.38220 * 119.99976 * 179.79129 * 2 1 3 8 8 C 1.50706 * 119.99807 * 359.97438 * 7 2 1 9 9 S 1.81403 * 109.46916 * 269.72478 * 8 7 2 10 10 O 1.42099 * 110.53972 * 68.37711 * 9 8 7 11 11 O 1.42099 * 110.54290 * 291.62552 * 9 8 7 12 12 N 1.65601 * 104.44698 * 180.02562 * 9 8 7 13 13 C 1.46931 * 120.60529 * 269.97811 * 12 9 8 14 14 C 1.53196 * 108.77131 * 233.58060 * 13 12 9 15 15 C 1.53039 * 109.33748 * 305.41286 * 14 13 12 16 16 C 1.53045 * 109.53694 * 61.35198 * 15 14 13 17 17 H 1.08993 * 109.49902 * 58.61908 * 16 15 14 18 18 C 1.50702 * 109.49612 * 178.68303 * 16 15 14 19 19 H 1.07998 * 119.99756 * 119.99608 * 18 16 15 20 20 C 1.37881 * 119.99853 * 299.99779 * 18 16 15 21 21 N 1.31513 * 119.99947 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99699 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47006 * 90.00068 * 22 20 18 24 24 H 1.48501 * 109.46918 * 209.99876 * 22 20 18 25 25 H 1.48501 * 109.47160 * 329.99603 * 22 20 18 26 26 C 1.46928 * 120.62733 * 90.00512 * 12 9 8 27 27 H 1.09004 * 109.46737 * 270.20562 * 1 2 3 28 28 H 1.08997 * 109.46726 * 30.20902 * 1 2 3 29 29 H 1.09000 * 109.46901 * 150.21329 * 1 2 3 30 30 H 1.07994 * 120.00197 * 0.04367 * 3 2 1 31 31 H 1.07994 * 119.99570 * 179.78984 * 4 3 2 32 32 H 1.07997 * 119.99582 * 180.02562 * 5 4 3 33 33 H 1.07994 * 120.00163 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46694 * 149.73084 * 8 7 2 35 35 H 1.08998 * 109.47391 * 29.72192 * 8 7 2 36 36 H 1.08996 * 109.56502 * 113.80754 * 13 12 9 37 37 H 1.09001 * 109.61713 * 353.38176 * 13 12 9 38 38 H 1.09002 * 109.49815 * 185.44599 * 14 13 12 39 39 H 1.09000 * 109.49595 * 65.37996 * 14 13 12 40 40 H 1.09001 * 109.45915 * 181.36781 * 15 14 13 41 41 H 1.08998 * 109.46049 * 301.34328 * 15 14 13 42 42 H 0.97000 * 119.99195 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.58597 * 6.59731 * 26 12 9 44 44 H 1.09001 * 109.69741 * 246.24550 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0054 5 6 4.2717 -0.0002 -0.0058 6 6 3.5807 -1.1971 -0.0014 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0097 9 16 1.1500 -3.0232 1.7221 10 8 0.2297 -2.1473 2.3585 11 8 2.3722 -3.3844 2.3507 12 7 0.3251 -4.4524 1.5830 13 6 -1.1430 -4.4661 1.5245 14 6 -1.6705 -5.4163 2.6042 15 6 -1.0210 -6.7912 2.4305 16 6 0.4952 -6.6656 2.5966 17 1 0.7207 -6.2576 3.5818 18 6 1.1307 -8.0249 2.4575 19 1 1.8576 -8.2041 1.6791 20 6 0.7841 -9.0399 3.3240 21 7 -0.1015 -8.8218 4.2715 22 14 1.5724 -10.7246 3.1521 23 1 2.8071 -10.7797 3.9753 24 1 0.6209 -11.7660 3.6165 25 1 1.9156 -10.9675 1.7279 26 6 1.0474 -5.7301 1.5164 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3633 -0.8919 -0.5105 30 1 1.6584 2.1326 0.0007 31 1 4.1204 2.1325 -0.0088 32 1 5.3517 -0.0002 -0.0096 33 1 4.1206 -2.1324 -0.0022 34 1 2.0314 -3.2625 -0.5056 35 1 0.4898 -2.3725 -0.4999 36 1 -1.4659 -4.8129 0.5430 37 1 -1.5258 -3.4613 1.7034 38 1 -2.7523 -5.5104 2.5090 39 1 -1.4250 -5.0198 3.5893 40 1 -1.4132 -7.4756 3.1827 41 1 -1.2466 -7.1764 1.4362 42 1 -0.3450 -9.5357 4.8813 43 1 2.1098 -5.5588 1.6896 44 1 0.9054 -6.1816 0.5345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594800309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:14 Heat of formation + Delta-G solvation = -77.039004 kcal Electronic energy + Delta-G solvation = -25906.806384 eV Core-core repulsion = 22335.698248 eV Total energy + Delta-G solvation = -3571.108136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53257 -39.27754 -38.26252 -37.00500 -35.19371 -34.50761 -33.20027 -32.72798 -31.84916 -28.85863 -27.51051 -27.03066 -25.15470 -23.37553 -23.16360 -21.94451 -21.12789 -19.67426 -18.89097 -18.10788 -17.77670 -17.32457 -17.03660 -16.62588 -16.40242 -15.94682 -15.41169 -15.14432 -14.92464 -14.70008 -14.42505 -14.31243 -14.12256 -14.02395 -13.82898 -13.80337 -13.31242 -13.20515 -13.14752 -12.93004 -12.90021 -12.76159 -12.67785 -12.49877 -12.16907 -11.95790 -11.93269 -11.84263 -11.77708 -11.56561 -11.04624 -10.75260 -10.41769 -9.93245 -9.71692 -9.49475 -8.06204 -6.21828 -0.91041 0.36136 0.38444 1.43582 1.44700 1.54437 1.66823 2.45357 2.69976 2.90364 3.07553 3.20485 3.34268 3.71966 3.84532 3.95723 3.98749 4.20399 4.28805 4.34052 4.37395 4.45212 4.57966 4.59220 4.65026 4.77237 4.81025 4.82704 4.87466 4.89629 4.98163 5.04893 5.10226 5.29654 5.30220 5.36545 5.44020 5.52247 5.55077 5.56419 5.66238 5.75341 5.99829 6.01185 6.18920 6.38612 6.90776 7.46389 8.97814 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.003420 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.735994 B = 8185.563743 C = 8952.381534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.130 4.130 4 C -0.109 4.109 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.119 4.119 8 C -0.562 4.562 9 S 2.594 3.406 10 O -0.978 6.978 11 O -0.996 6.996 12 N -1.000 6.000 13 C 0.119 3.881 14 C -0.129 4.129 15 C -0.103 4.103 16 C 0.034 3.966 17 H -0.020 1.020 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.010 3.990 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.261 1.261 26 C 0.132 3.868 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.031 0.969 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 18.983 -14.142 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.127 4.127 5 C -0.153 4.153 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.693 4.693 9 S 2.694 3.306 10 O -0.968 6.968 11 O -0.986 6.986 12 N -0.837 5.837 13 C -0.006 4.006 14 C -0.168 4.168 15 C -0.141 4.141 16 C 0.014 3.986 17 H -0.002 1.002 18 C -0.572 4.572 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.783 3.217 23 H -0.207 1.207 24 H -0.210 1.210 25 H -0.185 1.185 26 C 0.008 3.992 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.377 19.269 -13.167 23.379 hybrid contribution 0.443 -1.467 0.073 1.535 sum 1.820 17.801 -13.094 22.173 Atomic orbital electron populations 1.21148 0.89811 1.04620 1.03677 1.20202 0.97507 0.92684 0.98059 1.21439 0.94884 0.97939 1.00470 1.21655 0.94448 0.99174 0.97432 1.21503 1.01491 0.92014 1.00256 1.21465 0.93397 1.00187 0.99118 1.19061 0.94060 0.92311 1.06675 1.29545 1.11838 1.04581 1.23323 1.05380 0.73171 0.73037 0.78979 1.93492 1.63347 1.66041 1.73919 1.93523 1.48093 1.82467 1.74536 1.57590 1.15663 1.20633 1.89862 1.21638 0.77597 1.01074 1.00256 1.21892 1.00428 0.96491 0.98024 1.21389 0.96853 0.95517 1.00365 1.18911 0.93946 0.93174 0.92562 1.00205 1.21530 1.23902 0.96403 1.15398 0.91911 1.25781 0.95584 1.02584 0.94868 1.70051 1.33328 1.33819 1.18568 0.85571 0.77982 0.79355 0.78813 1.20743 1.21046 1.18514 1.21525 0.94905 0.82407 1.00389 0.90462 0.88713 0.90352 0.83055 0.82738 0.83414 0.84951 0.82124 0.81175 0.88589 0.88227 0.89712 0.95019 0.92410 0.93609 0.93148 0.91259 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.51 71.24 0.68 -1.70 16 2 C -0.08 -1.75 5.88 -19.86 -0.12 -1.87 16 3 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 4 C -0.11 -1.76 10.05 22.27 0.22 -1.54 16 5 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 6 C -0.12 -2.80 9.70 22.27 0.22 -2.59 16 7 C -0.12 -2.80 5.14 -19.86 -0.10 -2.90 16 8 C -0.56 -12.31 5.90 71.24 0.42 -11.89 16 9 S 2.59 85.89 5.43 -56.49 -0.31 85.59 16 10 O -0.98 -35.21 15.99 -127.65 -2.04 -37.25 16 11 O -1.00 -41.79 16.58 -127.65 -2.12 -43.90 16 12 N -1.00 -34.53 3.22 -513.05 -1.65 -36.19 16 13 C 0.12 3.58 6.43 86.36 0.56 4.14 16 14 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 15 C -0.10 -4.77 4.96 30.62 0.15 -4.62 16 16 C 0.03 1.74 2.25 -11.46 -0.03 1.72 16 17 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 18 C -0.53 -29.26 8.56 25.60 0.22 -29.04 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.01 0.58 5.30 84.66 0.45 1.03 16 21 N -0.92 -53.95 11.31 21.45 0.24 -53.71 16 22 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.13 5.37 5.65 86.36 0.49 5.86 16 27 H 0.08 1.59 7.63 -2.39 -0.02 1.58 16 28 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.08 1.16 5.94 -2.39 -0.01 1.14 16 30 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.16 2.88 8.09 -2.39 -0.02 2.86 16 35 H 0.17 2.67 5.94 -2.39 -0.01 2.66 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.10 2.62 6.86 -2.39 -0.02 2.61 16 38 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 3.10 6.04 -2.39 -0.01 3.08 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.07 2.90 6.86 -2.39 -0.02 2.89 16 44 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -75.09 361.15 0.92 -74.17 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.98 Total: 18.08 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 3.78 Total: -52.43 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -1.41 Total: -89.89 kcal Atomic # 8 Polarization: -76.99 SS G_CDS: -4.16 Total: -81.15 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 85.89 SS G_CDS: -0.31 Total: 85.59 kcal Total: -75.09 0.92 -74.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.868 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds