Wall clock time and date at job start Tue Mar 31 2020 14:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.99865 * 2 1 4 4 C 1.38217 * 120.00106 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99560 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00079 * 359.75048 * 5 4 3 7 7 C 1.38216 * 120.00045 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99840 * 0.02562 * 7 2 1 9 9 S 1.81397 * 109.47317 * 90.00012 * 8 7 2 10 10 O 1.42105 * 110.54275 * 68.37192 * 9 8 7 11 11 O 1.42101 * 110.54298 * 291.62295 * 9 8 7 12 12 N 1.65599 * 104.44825 * 179.97438 * 9 8 7 13 13 C 1.46925 * 120.62740 * 90.00349 * 12 9 8 14 14 C 1.53191 * 108.77612 * 126.36792 * 13 12 9 15 15 C 1.53041 * 109.31215 * 54.63216 * 14 13 12 16 16 C 1.53036 * 109.53735 * 298.63309 * 15 14 13 17 17 H 1.09001 * 109.50143 * 301.41619 * 16 15 14 18 18 C 1.50703 * 109.49694 * 181.35198 * 16 15 14 19 19 H 1.08005 * 119.99733 * 240.00379 * 18 16 15 20 20 C 1.37876 * 120.00268 * 60.00373 * 18 16 15 21 21 N 1.31515 * 119.99802 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99850 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47212 * 89.99870 * 22 20 18 24 24 H 1.48507 * 109.46719 * 209.99393 * 22 20 18 25 25 H 1.48494 * 109.47407 * 329.99187 * 22 20 18 26 26 C 1.46925 * 120.63178 * 269.71919 * 12 9 8 27 27 H 1.09000 * 109.47150 * 270.01688 * 1 2 3 28 28 H 1.09000 * 109.47574 * 30.01878 * 1 2 3 29 29 H 1.08998 * 109.46961 * 150.02177 * 1 2 3 30 30 H 1.07997 * 119.99804 * 0.02562 * 3 2 1 31 31 H 1.07992 * 119.99977 * 180.02562 * 4 3 2 32 32 H 1.08000 * 119.99335 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.00070 * 180.27259 * 6 5 4 34 34 H 1.09004 * 109.47172 * 329.99973 * 8 7 2 35 35 H 1.09000 * 109.46699 * 209.99875 * 8 7 2 36 36 H 1.09000 * 109.58418 * 246.15218 * 13 12 9 37 37 H 1.08991 * 109.58923 * 6.43517 * 13 12 9 38 38 H 1.08997 * 109.49812 * 174.58242 * 14 13 12 39 39 H 1.09001 * 109.49491 * 294.64666 * 14 13 12 40 40 H 1.08996 * 109.46306 * 58.65978 * 15 14 13 41 41 H 1.09000 * 109.46022 * 178.63174 * 15 14 13 42 42 H 0.96996 * 119.99993 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58276 * 353.42079 * 26 12 9 44 44 H 1.08993 * 109.58751 * 113.84646 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1968 0.0052 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 16 1.1428 -3.0261 -1.7097 10 8 2.3624 -3.3883 -2.3428 11 8 0.2199 -2.1514 -2.3438 12 7 0.3186 -4.4551 -1.5646 13 6 -1.1492 -4.4693 -1.4995 14 6 -1.6813 -5.4203 -2.5761 15 6 -1.0311 -6.7949 -2.4033 16 6 0.4843 -6.6696 -2.5758 17 1 0.7058 -6.2624 -3.5624 18 6 1.1203 -8.0290 -2.4384 19 1 1.8505 -8.2076 -1.6630 20 6 0.7700 -9.0445 -3.3027 21 7 -0.1195 -8.8271 -4.2466 22 14 1.5579 -10.7296 -3.1318 23 1 0.7437 -11.5660 -2.2138 24 1 1.6270 -11.3810 -4.4646 25 1 2.9291 -10.5815 -2.5815 26 6 1.0408 -5.7332 -1.5048 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6582 2.1326 0.0004 31 1 4.1203 2.1327 0.0010 32 1 5.3517 0.0001 0.0014 33 1 4.1206 -2.1322 0.0097 34 1 0.4919 -2.3716 0.5140 35 1 2.0335 -3.2616 0.5148 36 1 -1.4679 -4.8153 -0.5163 37 1 -1.5325 -3.4642 -1.6751 38 1 -2.7626 -5.5142 -2.4763 39 1 -1.4400 -5.0246 -3.5626 40 1 -1.2528 -7.1790 -1.4076 41 1 -1.4262 -7.4804 -3.1531 42 1 -0.3657 -9.5415 -4.8548 43 1 2.1019 -5.5621 -1.6865 44 1 0.9042 -6.1844 -0.5222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:18 Heat of formation + Delta-G solvation = -58.086609 kcal Electronic energy + Delta-G solvation = -25911.704256 eV Core-core repulsion = 22341.417957 eV Total energy + Delta-G solvation = -3570.286298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.74143 -37.72185 -36.89859 -35.62954 -33.67955 -33.31032 -32.39367 -31.11038 -30.10291 -28.00638 -26.70671 -25.11397 -23.62714 -22.36903 -21.68185 -21.10787 -19.50622 -18.29751 -17.41957 -16.78025 -16.28341 -16.16832 -15.93429 -15.35214 -15.16392 -14.61804 -13.99062 -13.91262 -13.55335 -13.40618 -13.27416 -13.20371 -12.88381 -12.80541 -12.62431 -12.45464 -12.29819 -12.15758 -11.75846 -11.71700 -11.33308 -11.27137 -11.19498 -10.97187 -10.95772 -10.84047 -10.70405 -10.20009 -9.92921 -9.79205 -9.35734 -9.02339 -8.84652 -8.77887 -8.41287 -8.13941 -5.99673 -4.07327 0.30824 1.16367 1.20832 2.96497 3.30190 3.37472 3.40565 3.51945 4.02482 4.20257 4.33893 4.43103 4.63263 4.73195 4.80800 4.97812 5.11623 5.20089 5.29943 5.32579 5.34121 5.46303 5.51555 5.65093 5.68867 5.78646 5.81820 6.01742 6.01894 6.21926 6.22986 6.28923 6.33744 6.36458 6.47567 6.63511 6.64651 6.76667 6.89291 7.02757 7.23970 7.45703 7.72026 7.98075 8.11144 8.40153 8.96076 9.57294 11.05801 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.003420 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.101859 B = 8184.950983 C = 8952.020092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.597 4.597 9 S 2.601 3.399 10 O -0.945 6.945 11 O -0.955 6.955 12 N -0.992 5.992 13 C 0.121 3.879 14 C -0.130 4.130 15 C -0.110 4.110 16 C 0.042 3.958 17 H 0.032 0.968 18 C -0.515 4.515 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.122 3.878 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.261 0.739 43 H 0.079 0.921 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 17.340 11.196 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.142 4.142 6 C -0.121 4.121 7 C -0.091 4.091 8 C -0.722 4.722 9 S 2.694 3.306 10 O -0.936 6.936 11 O -0.945 6.945 12 N -0.832 5.832 13 C -0.004 4.004 14 C -0.170 4.170 15 C -0.148 4.148 16 C 0.021 3.979 17 H 0.050 0.950 18 C -0.554 4.554 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.002 4.002 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.499 17.654 10.265 20.476 hybrid contribution 0.360 -1.122 0.848 1.452 sum 1.859 16.532 11.113 20.006 Atomic orbital electron populations 1.21020 0.90725 1.04440 1.02440 1.19880 0.96514 0.92432 0.98339 1.21045 0.94319 0.97353 1.01168 1.21226 0.94311 0.98222 0.99264 1.21153 1.00201 0.92190 1.00690 1.21209 0.93129 0.99200 0.98554 1.18897 0.93623 0.91937 1.04599 1.29865 1.09585 1.04023 1.28719 1.05377 0.74452 0.73648 0.77080 1.93590 1.46661 1.81828 1.71490 1.93536 1.62958 1.66163 1.71818 1.57694 1.15024 1.21366 1.89088 1.21448 0.78596 1.00631 0.99758 1.21935 0.98779 0.98139 0.98112 1.21594 0.98135 0.93878 1.01223 1.18854 0.92268 0.93050 0.93681 0.94995 1.21087 1.23633 0.95160 1.15549 0.92445 1.24947 0.95068 0.98799 0.95052 1.69877 1.31915 1.32794 1.18007 0.86584 0.79794 0.84194 0.77336 1.20757 1.21265 1.19870 1.21784 0.95438 0.81867 1.01108 0.90783 0.90712 0.90391 0.85549 0.85702 0.85474 0.85064 0.84349 0.84150 0.92227 0.90325 0.92553 0.92217 0.94624 0.88685 0.92953 0.90244 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.19 36.00 0.33 -1.00 16 2 C -0.07 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 5 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 6 C -0.10 -1.24 9.70 -39.59 -0.38 -1.62 16 7 C -0.09 -1.13 5.14 -104.62 -0.54 -1.67 16 8 C -0.60 -7.25 5.57 36.01 0.20 -7.05 16 9 S 2.60 43.49 5.42 -107.50 -0.58 42.91 16 10 O -0.95 -19.15 16.58 -57.54 -0.95 -20.10 16 11 O -0.95 -17.33 14.94 -57.54 -0.86 -18.19 16 12 N -0.99 -17.45 3.23 -113.77 -0.37 -17.82 16 13 C 0.12 1.94 6.43 -3.71 -0.02 1.92 16 14 C -0.13 -2.45 6.08 -26.61 -0.16 -2.61 16 15 C -0.11 -2.49 4.96 -26.69 -0.13 -2.63 16 16 C 0.04 1.02 2.24 -91.87 -0.21 0.81 16 17 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.52 -13.77 8.57 -34.44 -0.29 -14.07 16 19 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.01 11.31 55.43 0.63 -24.39 16 22 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.12 2.46 5.63 -3.93 -0.02 2.44 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.08 0.88 4.95 -51.93 -0.26 0.63 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 34 H 0.14 1.36 6.70 -51.92 -0.35 1.01 16 35 H 0.14 1.45 8.08 -51.92 -0.42 1.03 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.13 6.86 -51.93 -0.36 0.77 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.08 1.62 6.85 -51.93 -0.36 1.26 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -32.52 359.66 -11.52 -44.04 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.66 Total: 2.31 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -3.12 Total: -30.10 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.26 Total: -42.20 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.81 Total: -38.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 43.49 SS G_CDS: -0.58 Total: 42.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.52 -11.52 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.049 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds