Wall clock time and date at job start Tue Mar 31 2020 14:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.99865 * 2 1 4 4 C 1.38217 * 120.00106 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99560 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00079 * 359.75048 * 5 4 3 7 7 C 1.38216 * 120.00045 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99840 * 0.02562 * 7 2 1 9 9 S 1.81397 * 109.47317 * 90.00012 * 8 7 2 10 10 O 1.42105 * 110.54275 * 68.37192 * 9 8 7 11 11 O 1.42101 * 110.54298 * 291.62295 * 9 8 7 12 12 N 1.65599 * 104.44825 * 179.97438 * 9 8 7 13 13 C 1.46925 * 120.62740 * 90.00349 * 12 9 8 14 14 C 1.53191 * 108.77612 * 126.36792 * 13 12 9 15 15 C 1.53041 * 109.31215 * 54.63216 * 14 13 12 16 16 C 1.53036 * 109.53735 * 298.63309 * 15 14 13 17 17 H 1.09001 * 109.50143 * 301.41619 * 16 15 14 18 18 C 1.50703 * 109.49694 * 181.35198 * 16 15 14 19 19 H 1.08005 * 119.99733 * 240.00379 * 18 16 15 20 20 C 1.37876 * 120.00268 * 60.00373 * 18 16 15 21 21 N 1.31515 * 119.99802 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99850 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47212 * 89.99870 * 22 20 18 24 24 H 1.48507 * 109.46719 * 209.99393 * 22 20 18 25 25 H 1.48494 * 109.47407 * 329.99187 * 22 20 18 26 26 C 1.46925 * 120.63178 * 269.71919 * 12 9 8 27 27 H 1.09000 * 109.47150 * 270.01688 * 1 2 3 28 28 H 1.09000 * 109.47574 * 30.01878 * 1 2 3 29 29 H 1.08998 * 109.46961 * 150.02177 * 1 2 3 30 30 H 1.07997 * 119.99804 * 0.02562 * 3 2 1 31 31 H 1.07992 * 119.99977 * 180.02562 * 4 3 2 32 32 H 1.08000 * 119.99335 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.00070 * 180.27259 * 6 5 4 34 34 H 1.09004 * 109.47172 * 329.99973 * 8 7 2 35 35 H 1.09000 * 109.46699 * 209.99875 * 8 7 2 36 36 H 1.09000 * 109.58418 * 246.15218 * 13 12 9 37 37 H 1.08991 * 109.58923 * 6.43517 * 13 12 9 38 38 H 1.08997 * 109.49812 * 174.58242 * 14 13 12 39 39 H 1.09001 * 109.49491 * 294.64666 * 14 13 12 40 40 H 1.08996 * 109.46306 * 58.65978 * 15 14 13 41 41 H 1.09000 * 109.46022 * 178.63174 * 15 14 13 42 42 H 0.96996 * 119.99993 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58276 * 353.42079 * 26 12 9 44 44 H 1.08993 * 109.58751 * 113.84646 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1968 0.0052 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 16 1.1428 -3.0261 -1.7097 10 8 2.3624 -3.3883 -2.3428 11 8 0.2199 -2.1514 -2.3438 12 7 0.3186 -4.4551 -1.5646 13 6 -1.1492 -4.4693 -1.4995 14 6 -1.6813 -5.4203 -2.5761 15 6 -1.0311 -6.7949 -2.4033 16 6 0.4843 -6.6696 -2.5758 17 1 0.7058 -6.2624 -3.5624 18 6 1.1203 -8.0290 -2.4384 19 1 1.8505 -8.2076 -1.6630 20 6 0.7700 -9.0445 -3.3027 21 7 -0.1195 -8.8271 -4.2466 22 14 1.5579 -10.7296 -3.1318 23 1 0.7437 -11.5660 -2.2138 24 1 1.6270 -11.3810 -4.4646 25 1 2.9291 -10.5815 -2.5815 26 6 1.0408 -5.7332 -1.5048 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6582 2.1326 0.0004 31 1 4.1203 2.1327 0.0010 32 1 5.3517 0.0001 0.0014 33 1 4.1206 -2.1322 0.0097 34 1 0.4919 -2.3716 0.5140 35 1 2.0335 -3.2616 0.5148 36 1 -1.4679 -4.8153 -0.5163 37 1 -1.5325 -3.4642 -1.6751 38 1 -2.7626 -5.5142 -2.4763 39 1 -1.4400 -5.0246 -3.5626 40 1 -1.2528 -7.1790 -1.4076 41 1 -1.4262 -7.4804 -3.1531 42 1 -0.3657 -9.5415 -4.8548 43 1 2.1019 -5.5621 -1.6865 44 1 0.9042 -6.1844 -0.5222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594800310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:17 Heat of formation + Delta-G solvation = -78.064929 kcal Electronic energy + Delta-G solvation = -25912.570581 eV Core-core repulsion = 22341.417957 eV Total energy + Delta-G solvation = -3571.152623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53509 -39.29994 -38.28521 -37.02004 -35.19783 -34.50165 -33.20365 -32.73066 -31.87134 -28.86584 -27.50763 -27.03310 -25.16682 -23.37772 -23.16646 -21.94614 -21.13311 -19.68223 -18.89643 -18.11056 -17.81466 -17.30049 -17.03176 -16.60413 -16.40054 -15.96544 -15.41428 -15.15100 -14.92650 -14.66401 -14.43409 -14.35602 -14.13142 -14.02142 -13.83465 -13.78616 -13.35738 -13.22715 -13.05884 -13.03008 -12.89071 -12.75211 -12.69308 -12.51440 -12.16984 -11.96177 -11.95398 -11.84223 -11.77692 -11.56856 -11.04983 -10.76515 -10.40911 -9.93541 -9.72125 -9.49181 -8.06286 -6.21960 -0.92514 0.35614 0.38351 1.43332 1.44776 1.54657 1.65875 2.45325 2.69377 2.89159 3.06230 3.20356 3.34368 3.71992 3.84160 3.95214 4.02548 4.19504 4.28221 4.34631 4.40276 4.43823 4.57341 4.57820 4.64540 4.76824 4.79250 4.82023 4.86880 4.88361 4.98611 5.04820 5.09977 5.28179 5.29416 5.36403 5.43931 5.52086 5.54428 5.56038 5.66022 5.74983 5.99522 6.00854 6.18922 6.38400 6.90640 7.46319 8.97778 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.003420 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.101859 B = 8184.950983 C = 8952.020092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.109 4.109 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.119 4.119 8 C -0.560 4.560 9 S 2.593 3.407 10 O -0.995 6.995 11 O -0.978 6.978 12 N -1.000 6.000 13 C 0.119 3.881 14 C -0.129 4.129 15 C -0.103 4.103 16 C 0.034 3.966 17 H -0.020 1.020 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.010 3.990 21 N -0.918 5.918 22 Si 0.958 3.042 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.267 1.267 26 C 0.133 3.867 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 18.964 14.146 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.127 4.127 5 C -0.153 4.153 6 C -0.141 4.141 7 C -0.121 4.121 8 C -0.691 4.691 9 S 2.693 3.307 10 O -0.986 6.986 11 O -0.968 6.968 12 N -0.837 5.837 13 C -0.006 4.006 14 C -0.168 4.168 15 C -0.141 4.141 16 C 0.014 3.986 17 H -0.002 1.002 18 C -0.572 4.572 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.783 3.217 23 H -0.197 1.197 24 H -0.215 1.215 25 H -0.191 1.191 26 C 0.008 3.992 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.187 0.813 35 H 0.180 0.820 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.499 19.251 13.163 23.369 hybrid contribution 0.409 -1.461 -0.061 1.518 sum 1.908 17.790 13.103 22.177 Atomic orbital electron populations 1.21115 0.89825 1.04316 1.03877 1.20209 0.97480 0.92704 0.98092 1.21440 0.94891 0.97924 1.00467 1.21656 0.94433 0.99190 0.97407 1.21506 1.01505 0.92006 1.00237 1.21470 0.93378 1.00203 0.99079 1.19068 0.94079 0.92279 1.06699 1.29490 1.11778 1.04608 1.23217 1.05406 0.73201 0.73048 0.79012 1.93524 1.48243 1.82423 1.74369 1.93495 1.63195 1.66102 1.74005 1.57586 1.15680 1.20619 1.89863 1.21633 0.77595 1.01050 1.00297 1.21889 1.00432 0.96485 0.98024 1.21389 0.96865 0.95515 1.00361 1.18836 0.93964 0.93199 0.92633 1.00228 1.21521 1.23729 0.96349 1.15625 0.91917 1.25780 0.95611 1.02589 0.94827 1.70049 1.33191 1.33743 1.18778 0.85565 0.79182 0.79741 0.77202 1.19661 1.21496 1.19140 1.21443 0.94906 0.82387 1.00459 0.88486 0.89760 0.91656 0.83070 0.82720 0.83384 0.84912 0.81299 0.82035 0.88579 0.88284 0.89696 0.95009 0.93606 0.92390 0.93144 0.91248 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.19 71.24 0.65 -1.73 16 2 C -0.08 -1.77 5.88 -19.87 -0.12 -1.89 16 3 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 4 C -0.11 -1.76 10.05 22.27 0.22 -1.54 16 5 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 6 C -0.12 -2.79 9.70 22.27 0.22 -2.57 16 7 C -0.12 -2.81 5.14 -19.87 -0.10 -2.91 16 8 C -0.56 -12.32 5.57 71.24 0.40 -11.92 16 9 S 2.59 86.17 5.42 -56.49 -0.31 85.86 16 10 O -1.00 -41.82 16.58 -127.65 -2.12 -43.93 16 11 O -0.98 -35.41 14.94 -127.65 -1.91 -37.32 16 12 N -1.00 -34.61 3.23 -513.87 -1.66 -36.27 16 13 C 0.12 3.59 6.43 86.36 0.56 4.15 16 14 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 15 C -0.10 -4.78 4.96 30.62 0.15 -4.63 16 16 C 0.03 1.72 2.24 -11.61 -0.03 1.70 16 17 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 18 C -0.53 -29.26 8.57 25.60 0.22 -29.04 16 19 H 0.06 3.27 7.75 -2.91 -0.02 3.25 16 20 C 0.01 0.58 5.30 84.65 0.45 1.03 16 21 N -0.92 -53.93 11.31 21.45 0.24 -53.69 16 22 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.13 5.39 5.63 86.22 0.49 5.88 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 29 H 0.06 1.32 4.95 -2.39 -0.01 1.31 16 30 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 34 H 0.17 2.68 6.70 -2.39 -0.02 2.67 16 35 H 0.16 2.90 8.08 -2.39 -0.02 2.88 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.10 2.62 6.86 -2.39 -0.02 2.60 16 38 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 3.11 6.04 -2.39 -0.01 3.10 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.07 2.92 6.85 -2.39 -0.02 2.90 16 44 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -75.11 359.66 1.00 -74.11 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.98 Total: 18.11 kcal Atomic # 6 Polarization: -56.23 SS G_CDS: 3.73 Total: -52.50 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.42 Total: -89.96 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -4.02 Total: -81.25 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 86.17 SS G_CDS: -0.31 Total: 85.86 kcal Total: -75.11 1.00 -74.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.959 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds