Wall clock time and date at job start Tue Mar 31 2020 14:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00556 * 2 1 4 4 C 1.38210 * 120.00231 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99935 * 359.81734 * 4 3 2 6 6 C 1.38212 * 120.00124 * 0.41156 * 5 4 3 7 7 C 1.50696 * 120.00337 * 179.81393 * 6 5 4 8 8 S 1.81401 * 109.47163 * 269.73064 * 7 6 5 9 9 O 1.42100 * 110.54370 * 68.37119 * 8 7 6 10 10 O 1.42105 * 110.54447 * 291.62275 * 8 7 6 11 11 N 1.65601 * 104.45280 * 179.97438 * 8 7 6 12 12 C 1.46926 * 120.63062 * 270.02444 * 11 8 7 13 13 C 1.53190 * 108.77400 * 126.36741 * 12 11 8 14 14 C 1.53039 * 109.31474 * 54.63329 * 13 12 11 15 15 C 1.53074 * 109.65894 * 298.69942 * 14 13 12 16 16 H 1.09000 * 109.38776 * 301.27923 * 15 14 13 17 17 C 1.50703 * 109.62038 * 181.16889 * 15 14 13 18 18 H 1.08001 * 119.99867 * 273.39301 * 17 15 14 19 19 C 1.37877 * 119.99962 * 93.39431 * 17 15 14 20 20 N 1.31510 * 120.00080 * 184.74300 * 19 17 15 21 21 Si 1.86800 * 120.00047 * 4.74435 * 19 17 15 22 22 H 1.48510 * 109.47165 * 84.84821 * 21 19 17 23 23 H 1.48498 * 109.47168 * 204.85080 * 21 19 17 24 24 H 1.48502 * 109.47380 * 324.85382 * 21 19 17 25 25 C 1.46925 * 120.62877 * 89.99916 * 11 8 7 26 26 C 1.38223 * 119.99515 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47305 * 270.02528 * 1 2 3 28 28 H 1.09004 * 109.46873 * 30.02199 * 1 2 3 29 29 H 1.08999 * 109.47553 * 150.02146 * 1 2 3 30 30 H 1.07997 * 119.99898 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.00055 * 180.02562 * 4 3 2 32 32 H 1.07996 * 120.00032 * 180.23352 * 5 4 3 33 33 H 1.08998 * 109.47218 * 149.73212 * 7 6 5 34 34 H 1.08999 * 109.47265 * 29.72723 * 7 6 5 35 35 H 1.09000 * 109.58047 * 246.15286 * 12 11 8 36 36 H 1.09001 * 109.58785 * 6.57508 * 12 11 8 37 37 H 1.09003 * 109.49486 * 174.58849 * 13 12 11 38 38 H 1.08999 * 109.49596 * 294.64839 * 13 12 11 39 39 H 1.08999 * 109.45652 * 58.65285 * 14 13 12 40 40 H 1.09005 * 109.46080 * 178.62303 * 14 13 12 41 41 H 0.96996 * 120.00244 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58500 * 353.41620 * 25 11 8 43 43 H 1.08994 * 109.58558 * 113.70211 * 25 11 8 44 44 H 1.07991 * 119.99841 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0049 6 6 3.5806 -1.1972 0.0001 7 6 4.3339 -2.5023 0.0006 8 16 4.6357 -3.0269 -1.7094 9 8 5.5588 -2.1524 -2.3438 10 8 3.4162 -3.3893 -2.3425 11 7 5.4611 -4.4552 -1.5640 12 6 6.9289 -4.4683 -1.4986 13 6 7.3597 -5.2413 -0.2481 14 6 6.7189 -6.6309 -0.2662 15 6 5.1943 -6.4952 -0.2486 16 1 4.8901 -5.9469 0.6430 17 6 4.5645 -7.8643 -0.2375 18 1 4.3781 -8.3805 -1.1676 19 6 4.2262 -8.4578 0.9602 20 7 3.7634 -9.6886 0.9765 21 14 4.4252 -7.5135 2.5596 22 1 3.2208 -6.6767 2.7936 23 1 4.5886 -8.4710 3.6827 24 1 5.6244 -6.6417 2.4739 25 6 4.7395 -5.7333 -1.4974 26 6 2.1980 -1.1971 0.0005 27 1 -0.3634 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6584 2.1326 0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.3516 -0.0003 0.0091 33 1 3.7449 -3.2616 0.5150 34 1 5.2865 -2.3718 0.5140 35 1 7.3297 -4.9571 -2.3866 36 1 7.3013 -3.4454 -1.4424 37 1 8.4451 -5.3412 -0.2383 38 1 7.0359 -4.7023 0.6422 39 1 7.0240 -7.1597 -1.1692 40 1 7.0434 -7.1919 0.6103 41 1 3.5258 -10.1063 1.8191 42 1 3.6674 -5.5451 -1.4403 43 1 4.9600 -6.3241 -2.3864 44 1 1.6579 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594800542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:23 Heat of formation + Delta-G solvation = -82.382172 kcal Electronic energy + Delta-G solvation = -25901.186532 eV Core-core repulsion = 22329.846699 eV Total energy + Delta-G solvation = -3571.339833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46070 -39.43517 -38.30644 -37.08611 -35.09762 -34.72311 -33.14373 -33.01804 -32.16490 -28.75962 -27.72115 -27.09896 -25.33744 -23.27041 -23.11827 -22.00723 -20.91123 -19.91386 -19.14663 -18.47135 -17.76411 -17.26686 -17.21904 -16.49905 -16.38139 -15.88743 -15.52867 -15.36745 -14.73847 -14.64777 -14.54520 -14.47719 -14.37438 -14.20000 -14.03145 -13.81237 -13.38249 -13.26269 -13.24993 -12.99712 -12.95204 -12.88370 -12.80864 -12.39604 -12.30356 -12.07464 -11.98883 -11.84445 -11.79342 -11.45019 -11.29853 -10.92806 -10.64042 -9.98066 -9.76898 -9.55537 -8.26709 -6.30811 -0.93712 0.32460 0.35392 1.35612 1.37244 1.47775 1.59176 2.36437 2.64426 2.80343 3.02899 3.10142 3.30871 3.67677 3.77281 3.95678 4.06314 4.14424 4.17107 4.25029 4.36853 4.39641 4.44968 4.49210 4.52448 4.70258 4.73426 4.77629 4.80182 4.90230 4.92827 5.02681 5.03809 5.14987 5.21975 5.24774 5.32101 5.42325 5.44663 5.55757 5.58226 5.59665 5.71373 5.81970 5.98815 6.34106 6.77354 7.34837 8.90228 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.004359 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.943541 B = 6421.644672 C = 7367.876156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.107 4.107 7 C -0.574 4.574 8 S 2.606 3.394 9 O -0.973 6.973 10 O -0.988 6.988 11 N -0.999 5.999 12 C 0.117 3.883 13 C -0.132 4.132 14 C -0.110 4.110 15 C 0.003 3.997 16 H 0.039 0.961 17 C -0.516 4.516 18 H 0.033 0.967 19 C 0.014 3.986 20 N -0.950 5.950 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.232 1.232 25 C 0.140 3.860 26 C -0.134 4.134 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 23.726 1.579 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.109 4.109 7 C -0.704 4.704 8 S 2.704 3.296 9 O -0.964 6.964 10 O -0.979 6.979 11 N -0.837 5.837 12 C -0.008 4.008 13 C -0.171 4.171 14 C -0.148 4.148 15 C -0.017 4.017 16 H 0.058 0.942 17 C -0.555 4.555 18 H 0.051 0.949 19 C -0.183 4.183 20 N -0.590 5.590 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.155 1.155 25 C 0.015 3.985 26 C -0.153 4.153 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.860 23.960 0.814 24.046 hybrid contribution -0.242 -1.034 1.282 1.665 sum 1.618 22.926 2.095 23.078 Atomic orbital electron populations 1.20890 0.89272 1.03808 1.03409 1.20296 0.97770 0.92748 0.98714 1.21539 0.94620 0.98334 0.98945 1.21560 0.94679 0.98619 0.98592 1.21473 1.01400 0.91844 0.99827 1.19151 0.93883 0.92839 1.05024 1.29607 1.11540 1.04585 1.24678 1.05076 0.73197 0.72947 0.78360 1.93516 1.63259 1.66063 1.73539 1.93533 1.47920 1.82416 1.73988 1.57715 1.15940 1.20586 1.89467 1.21640 0.77459 1.02416 0.99263 1.22018 1.01459 0.95802 0.97828 1.21671 0.96164 0.96342 1.00648 1.19468 0.94136 0.93610 0.94522 0.94239 1.21212 1.39649 1.01442 0.93154 0.94860 1.25907 0.94263 0.95362 1.02774 1.70058 1.46315 1.14850 1.27810 0.85962 0.80659 0.79202 0.78593 1.19200 1.21921 1.15524 1.21412 0.95171 0.82688 0.99258 1.21325 0.93603 0.99384 1.00970 0.89888 0.89545 0.91689 0.82782 0.82496 0.83739 0.83400 0.81236 0.90710 0.87567 0.88704 0.91142 0.93271 0.93825 0.92639 0.90788 0.92450 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 10.01 71.23 0.71 -1.09 16 2 C -0.10 -1.97 5.88 -19.87 -0.12 -2.08 16 3 C -0.12 -1.98 9.70 22.27 0.22 -1.76 16 4 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 5 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 6 C -0.11 -2.65 5.14 -19.87 -0.10 -2.76 16 7 C -0.57 -13.82 6.31 71.23 0.45 -13.37 16 8 S 2.61 81.06 5.39 -56.49 -0.30 80.75 16 9 O -0.97 -32.07 16.72 -127.65 -2.13 -34.20 16 10 O -0.99 -38.11 16.73 -127.65 -2.14 -40.25 16 11 N -1.00 -31.70 3.22 -513.08 -1.65 -33.36 16 12 C 0.12 3.05 6.31 86.36 0.55 3.59 16 13 C -0.13 -3.47 6.08 30.67 0.19 -3.28 16 14 C -0.11 -4.02 5.15 30.63 0.16 -3.86 16 15 C 0.00 0.13 1.87 -11.45 -0.02 0.11 16 16 H 0.04 1.61 5.40 -2.39 -0.01 1.59 16 17 C -0.52 -27.99 8.87 25.60 0.23 -27.77 16 18 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 19 C 0.01 0.79 5.47 84.66 0.46 1.25 16 20 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 21 Si 0.93 41.53 26.88 68.60 1.84 43.37 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.23 -9.13 6.86 99.48 0.68 -8.45 16 25 C 0.14 5.43 5.58 86.36 0.48 5.91 16 26 C -0.13 -3.37 9.36 22.27 0.21 -3.16 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.09 0.99 8.09 -2.38 -0.02 0.97 16 29 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 30 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.15 3.47 8.09 -2.39 -0.02 3.45 16 34 H 0.17 2.98 8.08 -2.39 -0.02 2.96 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.11 2.25 7.10 -2.39 -0.02 2.23 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.67 8.05 -2.38 -0.02 1.66 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.07 2.97 7.10 -2.39 -0.02 2.95 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.12 3.14 8.06 -2.92 -0.02 3.12 16 Total: -1.00 -73.54 366.88 0.71 -72.83 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.95 Total: 21.15 kcal Atomic # 6 Polarization: -56.34 SS G_CDS: 3.85 Total: -52.50 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -1.35 Total: -91.16 kcal Atomic # 8 Polarization: -70.18 SS G_CDS: -4.27 Total: -74.45 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.84 Total: 43.37 kcal Atomic # 16 Polarization: 81.06 SS G_CDS: -0.30 Total: 80.75 kcal Total: -73.54 0.71 -72.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.554 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds