Wall clock time and date at job start Tue Mar 31 2020 14:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99843 * 2 1 4 4 C 1.38226 * 120.00099 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00266 * 180.02562 * 5 4 3 7 7 S 1.81403 * 109.46916 * 90.00095 * 6 5 4 8 8 O 1.42099 * 110.53972 * 68.37711 * 7 6 5 9 9 O 1.42099 * 110.54290 * 291.62552 * 7 6 5 10 10 N 1.65601 * 104.44698 * 180.02562 * 7 6 5 11 11 C 1.46931 * 120.60529 * 269.97811 * 10 7 6 12 12 C 1.53196 * 108.77131 * 233.58060 * 11 10 7 13 13 C 1.53039 * 109.33748 * 305.41286 * 12 11 10 14 14 C 1.53045 * 109.53694 * 61.35198 * 13 12 11 15 15 H 1.08993 * 109.49877 * 58.58562 * 14 13 12 16 16 C 1.50702 * 109.49632 * 178.65052 * 14 13 12 17 17 H 1.08002 * 119.99791 * 119.99448 * 16 14 13 18 18 C 1.37878 * 119.99824 * 299.99809 * 16 14 13 19 19 N 1.31508 * 120.00016 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99744 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47230 * 89.99973 * 20 18 16 22 22 H 1.48501 * 109.46995 * 209.99933 * 20 18 16 23 23 H 1.48505 * 109.47016 * 329.99544 * 20 18 16 24 24 C 1.46928 * 120.62733 * 90.00512 * 10 7 6 25 25 C 1.38236 * 120.00037 * 0.27612 * 5 4 3 26 26 C 1.38234 * 120.00177 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47123 * 90.00184 * 1 2 3 28 28 H 1.09003 * 109.46886 * 209.99592 * 1 2 3 29 29 H 1.08991 * 109.47377 * 329.99803 * 1 2 3 30 30 H 1.08003 * 119.99679 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00381 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.46694 * 330.00702 * 6 5 4 33 33 H 1.08998 * 109.47391 * 209.99809 * 6 5 4 34 34 H 1.08996 * 109.56502 * 113.80754 * 11 10 7 35 35 H 1.09001 * 109.61713 * 353.38176 * 11 10 7 36 36 H 1.09002 * 109.49815 * 185.44599 * 12 11 10 37 37 H 1.09000 * 109.49595 * 65.37996 * 12 11 10 38 38 H 1.09001 * 109.45915 * 181.36781 * 13 12 11 39 39 H 1.08998 * 109.46049 * 301.34328 * 13 12 11 40 40 H 0.97005 * 120.00014 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.58597 * 6.59731 * 24 10 7 42 42 H 1.09001 * 109.69741 * 246.24550 * 24 10 7 43 43 H 1.08004 * 119.99974 * 179.72258 * 25 5 4 44 44 H 1.07997 * 120.00044 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0002 0.0016 6 6 5.7787 0.0002 0.0028 7 16 6.3820 0.0009 1.7135 8 8 6.0854 -1.2358 2.3473 9 8 6.0854 1.2382 2.3464 10 7 8.0318 0.0016 1.5699 11 6 8.7776 -1.2627 1.5058 12 6 9.8673 -1.2474 2.5825 13 6 10.7326 0.0030 2.4099 14 6 9.8661 1.2528 2.5818 15 1 9.4023 1.2411 3.5681 16 6 10.7253 2.4833 2.4446 17 1 10.5153 3.2048 1.6689 18 6 11.7796 2.6879 3.3093 19 7 12.0357 1.8090 4.2535 20 14 12.8441 4.2134 3.1397 21 1 12.2764 5.3077 3.9675 22 1 14.2227 3.9087 3.5999 23 1 12.8796 4.6365 1.7166 24 6 8.7770 1.2662 1.5047 25 6 3.5806 -1.1970 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1205 2.1326 0.0010 32 1 6.1424 0.8900 -0.5111 33 1 6.1425 -0.8900 -0.5103 34 1 9.2367 -1.3663 0.5227 35 1 8.0994 -2.0971 1.6842 36 1 10.4894 -2.1369 2.4832 37 1 9.4038 -1.2358 3.5690 38 1 11.5236 0.0036 3.1600 39 1 11.1763 0.0031 1.4143 40 1 12.7771 1.9531 4.8621 41 1 8.0978 2.1001 1.6821 42 1 9.2363 1.3718 0.5218 43 1 4.1207 -2.1323 -0.0073 44 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:27 Heat of formation + Delta-G solvation = -60.602921 kcal Electronic energy + Delta-G solvation = -25438.566623 eV Core-core repulsion = 21868.171209 eV Total energy + Delta-G solvation = -3570.395414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.65982 -37.69557 -36.86404 -35.61635 -34.22202 -33.30214 -31.15797 -31.10953 -30.08023 -29.73706 -25.41943 -25.10826 -23.57062 -22.97173 -21.67724 -21.14768 -19.50623 -18.30815 -17.40227 -16.63676 -16.23092 -16.05829 -15.77171 -15.37321 -15.27449 -14.61775 -14.02517 -13.99433 -13.64361 -13.48889 -13.37186 -13.12727 -13.01529 -12.79441 -12.60909 -12.44132 -12.30955 -12.14755 -11.79359 -11.70430 -11.50845 -11.31172 -11.18221 -10.96702 -10.87123 -10.82824 -10.69660 -10.20560 -9.92340 -9.78062 -9.35152 -9.14907 -8.83767 -8.74768 -8.40348 -8.12352 -5.99327 -4.06921 0.31863 1.16671 1.18536 2.97669 3.30925 3.37683 3.39927 3.50005 4.03900 4.22352 4.34570 4.43303 4.60834 4.66800 4.80360 4.90096 5.17031 5.20871 5.22496 5.29916 5.30925 5.35503 5.49089 5.54806 5.69993 5.79422 5.84027 5.85049 6.02861 6.15730 6.23197 6.29504 6.34744 6.35327 6.48480 6.63757 6.65078 6.75298 6.90249 7.02889 7.24775 7.46342 7.72410 7.98693 8.11502 8.40663 8.96488 9.57650 11.06135 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.003080 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.735383 B = 9087.683302 C = 9801.447839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.102 4.102 5 C -0.092 4.092 6 C -0.594 4.594 7 S 2.602 3.398 8 O -0.957 6.957 9 O -0.945 6.945 10 N -0.992 5.992 11 C 0.121 3.879 12 C -0.131 4.131 13 C -0.110 4.110 14 C 0.042 3.958 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.122 3.878 25 C -0.103 4.103 26 C -0.119 4.119 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.130 0.870 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 -6.583 -11.259 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.094 4.094 6 C -0.719 4.719 7 S 2.695 3.305 8 O -0.947 6.947 9 O -0.936 6.936 10 N -0.832 5.832 11 C -0.004 4.004 12 C -0.170 4.170 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.050 0.950 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.002 4.002 25 C -0.122 4.122 26 C -0.137 4.137 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.574 -6.616 -10.332 21.433 hybrid contribution 0.915 0.802 -0.839 1.478 sum -16.659 -5.815 -11.171 20.884 Atomic orbital electron populations 1.20812 0.90956 1.03032 1.02373 1.20034 0.96317 0.93237 0.98877 1.21056 0.93842 0.97863 1.00856 1.21207 0.94633 0.97683 0.98554 1.19020 0.91866 0.94357 1.04174 1.29840 1.01263 1.12129 1.28704 1.05340 0.73546 0.74484 0.77098 1.93543 1.83852 1.45489 1.71862 1.93589 1.83530 1.44920 1.71517 1.57692 1.22943 1.13448 1.89072 1.21451 0.95054 0.84200 0.99735 1.21937 0.96938 0.99974 0.98120 1.21596 0.99527 0.92505 1.01214 1.18931 0.91241 0.94023 0.93603 0.94964 1.21089 1.13058 1.05741 1.15514 0.92456 1.24946 0.97407 0.96426 0.95093 1.69878 1.29921 1.34830 1.17994 0.86588 0.79662 0.83350 0.78322 1.20673 1.21300 1.19938 1.21863 0.95419 0.81870 1.01056 1.21162 0.94603 0.97521 0.98928 1.21035 0.93820 0.97820 1.01048 0.91067 0.91370 0.91332 0.85450 0.85017 0.84205 0.84465 0.92220 0.90311 0.92565 0.92229 0.88693 0.94631 0.92955 0.90242 0.92555 0.85214 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.08 -0.83 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 4 C -0.10 -1.23 9.70 -39.59 -0.38 -1.61 16 5 C -0.09 -1.16 5.14 -104.62 -0.54 -1.70 16 6 C -0.59 -7.10 6.31 36.01 0.23 -6.88 16 7 S 2.60 43.54 5.43 -107.50 -0.58 42.96 16 8 O -0.96 -17.84 16.59 -57.54 -0.95 -18.80 16 9 O -0.95 -19.02 16.58 -57.54 -0.95 -19.98 16 10 N -0.99 -17.54 3.22 -113.52 -0.37 -17.90 16 11 C 0.12 1.96 6.43 -3.71 -0.02 1.94 16 12 C -0.13 -2.47 6.08 -26.61 -0.16 -2.63 16 13 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 14 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 15 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.52 -13.79 8.57 -34.44 -0.29 -14.08 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.09 11.31 55.43 0.63 -24.46 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.12 2.45 5.66 -3.71 -0.02 2.43 16 25 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 26 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.14 1.43 8.09 -51.92 -0.42 1.01 16 33 H 0.14 1.30 8.08 -51.92 -0.42 0.88 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.16 6.86 -51.93 -0.36 0.80 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 41 H 0.08 1.61 6.86 -51.93 -0.36 1.25 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.87 366.76 -11.66 -44.53 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.90 Total: 1.56 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -3.04 Total: -29.39 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.26 Total: -42.36 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.91 Total: -38.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 43.54 SS G_CDS: -0.58 Total: 42.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.87 -11.66 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.074 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds