Wall clock time and date at job start Tue Mar 31 2020 14:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99843 * 2 1 4 4 C 1.38226 * 120.00099 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00266 * 180.02562 * 5 4 3 7 7 S 1.81403 * 109.46916 * 90.00095 * 6 5 4 8 8 O 1.42099 * 110.53972 * 68.37711 * 7 6 5 9 9 O 1.42099 * 110.54290 * 291.62552 * 7 6 5 10 10 N 1.65601 * 104.44698 * 180.02562 * 7 6 5 11 11 C 1.46931 * 120.60529 * 269.97811 * 10 7 6 12 12 C 1.53196 * 108.77131 * 233.58060 * 11 10 7 13 13 C 1.53039 * 109.33748 * 305.41286 * 12 11 10 14 14 C 1.53045 * 109.53694 * 61.35198 * 13 12 11 15 15 H 1.08993 * 109.49877 * 58.58562 * 14 13 12 16 16 C 1.50702 * 109.49632 * 178.65052 * 14 13 12 17 17 H 1.08002 * 119.99791 * 119.99448 * 16 14 13 18 18 C 1.37878 * 119.99824 * 299.99809 * 16 14 13 19 19 N 1.31508 * 120.00016 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99744 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47230 * 89.99973 * 20 18 16 22 22 H 1.48501 * 109.46995 * 209.99933 * 20 18 16 23 23 H 1.48505 * 109.47016 * 329.99544 * 20 18 16 24 24 C 1.46928 * 120.62733 * 90.00512 * 10 7 6 25 25 C 1.38236 * 120.00037 * 0.27612 * 5 4 3 26 26 C 1.38234 * 120.00177 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47123 * 90.00184 * 1 2 3 28 28 H 1.09003 * 109.46886 * 209.99592 * 1 2 3 29 29 H 1.08991 * 109.47377 * 329.99803 * 1 2 3 30 30 H 1.08003 * 119.99679 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00381 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.46694 * 330.00702 * 6 5 4 33 33 H 1.08998 * 109.47391 * 209.99809 * 6 5 4 34 34 H 1.08996 * 109.56502 * 113.80754 * 11 10 7 35 35 H 1.09001 * 109.61713 * 353.38176 * 11 10 7 36 36 H 1.09002 * 109.49815 * 185.44599 * 12 11 10 37 37 H 1.09000 * 109.49595 * 65.37996 * 12 11 10 38 38 H 1.09001 * 109.45915 * 181.36781 * 13 12 11 39 39 H 1.08998 * 109.46049 * 301.34328 * 13 12 11 40 40 H 0.97005 * 120.00014 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.58597 * 6.59731 * 24 10 7 42 42 H 1.09001 * 109.69741 * 246.24550 * 24 10 7 43 43 H 1.08004 * 119.99974 * 179.72258 * 25 5 4 44 44 H 1.07997 * 120.00044 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0002 0.0016 6 6 5.7787 0.0002 0.0028 7 16 6.3820 0.0009 1.7135 8 8 6.0854 -1.2358 2.3473 9 8 6.0854 1.2382 2.3464 10 7 8.0318 0.0016 1.5699 11 6 8.7776 -1.2627 1.5058 12 6 9.8673 -1.2474 2.5825 13 6 10.7326 0.0030 2.4099 14 6 9.8661 1.2528 2.5818 15 1 9.4023 1.2411 3.5681 16 6 10.7253 2.4833 2.4446 17 1 10.5153 3.2048 1.6689 18 6 11.7796 2.6879 3.3093 19 7 12.0357 1.8090 4.2535 20 14 12.8441 4.2134 3.1397 21 1 12.2764 5.3077 3.9675 22 1 14.2227 3.9087 3.5999 23 1 12.8796 4.6365 1.7166 24 6 8.7770 1.2662 1.5047 25 6 3.5806 -1.1970 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1205 2.1326 0.0010 32 1 6.1424 0.8900 -0.5111 33 1 6.1425 -0.8900 -0.5103 34 1 9.2367 -1.3663 0.5227 35 1 8.0994 -2.0971 1.6842 36 1 10.4894 -2.1369 2.4832 37 1 9.4038 -1.2358 3.5690 38 1 11.5236 0.0036 3.1600 39 1 11.1763 0.0031 1.4143 40 1 12.7771 1.9531 4.8621 41 1 8.0978 2.1001 1.6821 42 1 9.2363 1.3718 0.5218 43 1 4.1207 -2.1323 -0.0073 44 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:26 Heat of formation + Delta-G solvation = -80.874790 kcal Electronic energy + Delta-G solvation = -25439.445677 eV Core-core repulsion = 21868.171209 eV Total energy + Delta-G solvation = -3571.274468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44233 -39.27661 -38.26150 -37.01372 -35.19453 -35.01504 -32.73392 -31.94099 -31.84840 -30.52285 -27.03385 -26.21269 -25.09545 -23.76577 -23.35450 -21.96036 -21.14617 -19.70283 -18.88545 -18.10132 -17.75134 -17.21677 -16.82369 -16.56303 -16.36582 -16.06396 -15.42221 -15.14452 -14.88881 -14.64341 -14.43114 -14.40312 -14.33598 -13.93318 -13.84701 -13.81593 -13.24962 -13.24585 -13.20132 -12.91436 -12.89655 -12.75848 -12.67839 -12.50126 -12.26742 -11.93161 -11.92350 -11.84451 -11.77583 -11.56611 -11.04530 -10.75154 -10.41798 -9.95264 -9.83446 -9.41872 -8.06215 -6.21798 -0.91316 0.32616 0.38471 1.43427 1.44513 1.54249 1.66836 2.45246 2.67613 2.90053 3.08965 3.20527 3.35544 3.72829 3.84603 4.01345 4.04893 4.05657 4.28363 4.35722 4.44136 4.49448 4.49945 4.58286 4.65010 4.80217 4.82486 4.84456 4.87396 4.89346 4.98700 5.09170 5.10172 5.24034 5.29549 5.36160 5.37561 5.45444 5.55508 5.61160 5.66152 5.75126 5.99319 5.99878 6.18853 6.38582 6.90950 7.46435 8.97883 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.003080 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.735383 B = 9087.683302 C = 9801.447839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.555 4.555 7 S 2.594 3.406 8 O -0.985 6.985 9 O -0.994 6.994 10 N -1.000 6.000 11 C 0.119 3.881 12 C -0.129 4.129 13 C -0.103 4.103 14 C 0.034 3.966 15 H -0.020 1.020 16 C -0.532 4.532 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.919 5.919 20 Si 0.957 3.043 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.261 1.261 24 C 0.133 3.867 25 C -0.115 4.115 26 C -0.129 4.129 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.259 0.741 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.144 0.856 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.668 -7.218 -14.222 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.124 4.124 6 C -0.686 4.686 7 S 2.694 3.306 8 O -0.976 6.976 9 O -0.984 6.984 10 N -0.838 5.838 11 C -0.006 4.006 12 C -0.168 4.168 13 C -0.142 4.142 14 C 0.013 3.987 15 H -0.002 1.002 16 C -0.571 4.571 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.558 5.558 20 Si 0.783 3.217 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.185 1.185 24 C 0.009 3.991 25 C -0.134 4.134 26 C -0.146 4.146 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.161 0.839 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.979 -7.258 -13.242 24.254 hybrid contribution 1.186 0.972 0.071 1.535 sum -17.793 -6.287 -13.171 23.012 Atomic orbital electron populations 1.20888 0.88741 1.03946 1.03545 1.20472 0.98055 0.92894 0.97140 1.21387 0.93575 0.99227 1.00646 1.21465 0.95642 0.97890 0.98930 1.19186 0.91936 0.95070 1.06180 1.29454 1.01165 1.15085 1.22919 1.05368 0.73023 0.73045 0.79130 1.93495 1.83881 1.45964 1.74232 1.93524 1.83900 1.46563 1.74452 1.57579 1.23392 1.12918 1.89880 1.21627 0.94518 0.84123 1.00287 1.21893 0.97748 0.99189 0.98021 1.21393 0.98820 0.93588 1.00357 1.18917 0.92597 0.94517 0.92620 1.00213 1.21524 1.13309 1.06702 1.15564 0.91876 1.25782 0.98880 0.99308 0.94883 1.70050 1.30421 1.36590 1.18786 0.85573 0.77759 0.79586 0.78814 1.20742 1.21064 1.18505 1.21522 0.94187 0.83073 1.00360 1.21483 0.95518 0.97769 0.98627 1.21418 0.93654 0.99120 1.00434 0.89616 0.90335 0.90621 0.83570 0.84745 0.81996 0.81016 0.88522 0.88423 0.89751 0.95064 0.92422 0.93588 0.93153 0.91111 0.90011 0.83851 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.50 16 2 C -0.08 -1.47 5.88 -19.86 -0.12 -1.58 16 3 C -0.13 -2.51 9.70 22.27 0.22 -2.30 16 4 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 5 C -0.12 -2.81 5.14 -19.86 -0.10 -2.91 16 6 C -0.56 -11.75 6.31 71.24 0.45 -11.30 16 7 S 2.59 85.65 5.43 -56.49 -0.31 85.35 16 8 O -0.99 -36.50 16.59 -127.65 -2.12 -38.62 16 9 O -0.99 -41.30 16.58 -127.65 -2.12 -43.42 16 10 N -1.00 -34.57 3.22 -513.05 -1.65 -36.22 16 11 C 0.12 3.63 6.43 86.36 0.56 4.18 16 12 C -0.13 -4.90 6.08 30.67 0.19 -4.72 16 13 C -0.10 -4.81 4.96 30.62 0.15 -4.66 16 14 C 0.03 1.71 2.25 -11.46 -0.03 1.69 16 15 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 16 C -0.53 -29.16 8.57 25.60 0.22 -28.94 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 18 C 0.01 0.55 5.30 84.66 0.45 1.00 16 19 N -0.92 -54.11 11.31 21.45 0.24 -53.87 16 20 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.13 5.38 5.66 86.36 0.49 5.87 16 25 C -0.11 -2.39 9.70 22.27 0.22 -2.17 16 26 C -0.13 -2.29 9.70 22.27 0.22 -2.08 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.68 8.09 -2.39 -0.02 0.67 16 29 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.16 2.78 8.09 -2.39 -0.02 2.76 16 33 H 0.17 2.48 8.08 -2.39 -0.02 2.46 16 34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.10 2.64 6.86 -2.39 -0.02 2.62 16 36 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 3.10 6.04 -2.39 -0.01 3.09 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 41 H 0.07 2.94 6.86 -2.39 -0.02 2.92 16 42 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 43 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -75.76 366.76 0.88 -74.88 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.97 Total: 17.18 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 3.83 Total: -50.93 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -1.41 Total: -90.10 kcal Atomic # 8 Polarization: -77.81 SS G_CDS: -4.23 Total: -82.04 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 85.65 SS G_CDS: -0.31 Total: 85.35 kcal Total: -75.76 0.88 -74.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.997 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds