Wall clock time and date at job start Tue Mar 31 2020 14:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38233 * 120.00438 * 2 1 4 4 C 1.38227 * 120.00034 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00453 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00533 * 179.97438 * 5 4 3 7 7 S 1.81394 * 109.47299 * 90.00000 * 6 5 4 8 8 O 1.42097 * 110.54714 * 291.63048 * 7 6 5 9 9 O 1.42104 * 110.53991 * 68.37989 * 7 6 5 10 10 N 1.65599 * 104.45045 * 179.97438 * 7 6 5 11 11 C 1.46924 * 120.63301 * 269.72348 * 10 7 6 12 12 C 1.53620 * 108.54587 * 126.36791 * 11 10 7 13 13 C 1.53048 * 109.23948 * 54.85328 * 12 11 10 14 14 C 1.53036 * 109.53880 * 298.51459 * 13 12 11 15 15 H 1.09000 * 109.49482 * 301.40991 * 14 13 12 16 16 C 1.50703 * 109.49587 * 181.31729 * 14 13 12 17 17 H 1.08004 * 119.99907 * 273.58927 * 16 14 13 18 18 C 1.37872 * 120.00256 * 93.58295 * 16 14 13 19 19 N 1.31515 * 120.00456 * 184.26428 * 18 16 14 20 20 Si 1.86799 * 119.99852 * 4.26296 * 18 16 14 21 21 H 1.48500 * 109.47087 * 84.85002 * 20 18 16 22 22 H 1.48504 * 109.47212 * 204.84955 * 20 18 16 23 23 H 1.48497 * 109.47338 * 324.85233 * 20 18 16 24 24 C 1.46928 * 120.62907 * 90.00144 * 10 7 6 25 25 C 1.38234 * 119.99656 * 0.25414 * 5 4 3 26 26 C 1.38237 * 119.99525 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47043 * 89.98844 * 1 2 3 28 28 H 1.09001 * 109.47539 * 209.99585 * 1 2 3 29 29 H 1.09009 * 109.46771 * 329.99510 * 1 2 3 30 30 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00116 * 179.97438 * 4 3 2 32 32 H 1.09006 * 109.46867 * 329.99762 * 6 5 4 33 33 H 1.09004 * 109.46955 * 210.00500 * 6 5 4 34 34 H 1.09005 * 109.58464 * 246.20542 * 11 10 7 35 35 H 1.09002 * 109.58804 * 6.62467 * 11 10 7 36 36 H 1.08996 * 109.63348 * 294.86621 * 12 11 10 37 37 H 1.08994 * 109.45851 * 174.73649 * 12 11 10 38 38 H 1.09001 * 109.46068 * 178.48669 * 13 12 11 39 39 H 1.09008 * 109.44519 * 58.52796 * 13 12 11 40 40 H 0.96995 * 120.00449 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.58681 * 353.37750 * 24 10 7 42 42 H 1.09006 * 109.58415 * 113.65129 * 24 10 7 43 43 H 1.08002 * 120.00214 * 179.71912 * 25 5 4 44 44 H 1.07997 * 120.00283 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 5.7787 -0.0003 0.0005 7 16 6.3834 -0.0003 1.7107 8 8 6.0873 1.2366 2.3444 9 8 6.0872 -1.2374 2.3442 10 7 8.0330 -0.0012 1.5657 11 6 8.7787 -1.2658 1.5065 12 6 9.6642 -1.2524 0.2513 13 6 10.5474 -0.0027 0.2704 14 6 9.6653 1.2478 0.2505 15 1 9.0376 1.2360 -0.6405 16 6 10.5363 2.4775 0.2368 17 1 10.8931 2.8970 1.1659 18 6 10.8779 3.0671 -0.9618 19 7 11.7053 4.0891 -0.9799 20 14 10.1654 2.4140 -2.5604 21 1 8.8344 3.0288 -2.7967 22 1 11.0748 2.7554 -3.6837 23 1 10.0204 0.9388 -2.4716 24 6 8.7793 1.2627 1.5000 25 6 3.5805 -1.1973 -0.0053 26 6 2.1981 -1.1972 0.0005 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6583 2.1324 -0.0004 31 1 4.1206 2.1323 0.0001 32 1 6.1421 0.8897 -0.5134 33 1 6.1419 -0.8903 -0.5134 34 1 9.4015 -1.3647 2.3955 35 1 8.0793 -2.1002 1.4531 36 1 9.0365 -1.2406 -0.6397 37 1 10.2934 -2.1424 0.2414 38 1 11.1966 -0.0032 -0.6052 39 1 11.1569 -0.0028 1.1742 40 1 11.9453 4.5041 -1.8231 41 1 8.0805 2.0972 1.4425 42 1 9.4004 1.3670 2.3898 43 1 4.1204 -2.1326 -0.0099 44 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:29 Heat of formation + Delta-G solvation = -82.411594 kcal Electronic energy + Delta-G solvation = -25789.516035 eV Core-core repulsion = 22218.174926 eV Total energy + Delta-G solvation = -3571.341109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45651 -39.42263 -38.29892 -37.07909 -35.10393 -35.01903 -33.13864 -32.13884 -31.95483 -30.54769 -27.09750 -26.24271 -25.26026 -23.77526 -23.16765 -22.00706 -20.97145 -19.91800 -19.14138 -18.47253 -17.81973 -17.27259 -16.80058 -16.48299 -16.38259 -16.06999 -15.52939 -15.36230 -14.69750 -14.63415 -14.53109 -14.47389 -14.41431 -14.24953 -14.00517 -13.87084 -13.37649 -13.27297 -13.25426 -12.95055 -12.91980 -12.88176 -12.79978 -12.38977 -12.29193 -12.08234 -11.93821 -11.83862 -11.79500 -11.44266 -11.29615 -10.92076 -10.64149 -9.96778 -9.90884 -9.46019 -8.26463 -6.30669 -0.92940 0.30126 0.36930 1.35979 1.37665 1.48243 1.60033 2.36758 2.63853 2.80942 3.03687 3.10483 3.33307 3.69259 3.77558 4.00305 4.02125 4.04259 4.15105 4.25457 4.38557 4.43092 4.47948 4.48585 4.52474 4.70591 4.77853 4.79237 4.83920 4.88117 4.92972 5.03985 5.07822 5.15203 5.22224 5.23313 5.32427 5.36309 5.44802 5.56096 5.59889 5.60006 5.71561 5.82180 5.98154 6.34268 6.77550 7.34986 8.90486 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.004039 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.265475 B = 6930.789334 C = 7775.554774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.572 4.572 7 S 2.605 3.395 8 O -0.989 6.989 9 O -0.974 6.974 10 N -1.000 6.000 11 C 0.117 3.883 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.003 3.997 15 H 0.040 0.960 16 C -0.515 4.515 17 H 0.033 0.967 18 C 0.013 3.987 19 N -0.951 5.951 20 Si 0.933 3.067 21 H -0.266 1.266 22 H -0.293 1.293 23 H -0.232 1.232 24 C 0.140 3.860 25 C -0.113 4.113 26 C -0.126 4.126 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.146 0.854 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.925 -14.569 -1.580 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.121 4.121 6 C -0.702 4.702 7 S 2.703 3.297 8 O -0.979 6.979 9 O -0.965 6.965 10 N -0.838 5.838 11 C -0.008 4.008 12 C -0.171 4.171 13 C -0.148 4.148 14 C -0.017 4.017 15 H 0.058 0.942 16 C -0.554 4.554 17 H 0.051 0.949 18 C -0.184 4.184 19 N -0.591 5.591 20 Si 0.757 3.243 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.155 1.155 24 C 0.015 3.985 25 C -0.132 4.132 26 C -0.144 4.144 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.187 0.813 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.163 0.837 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.269 -14.458 -0.815 24.910 hybrid contribution 0.793 0.796 -1.272 1.697 sum -19.476 -13.662 -2.087 23.881 Atomic orbital electron populations 1.20888 0.88647 1.04038 1.03505 1.20466 0.98079 0.92815 0.97143 1.21366 0.93400 0.99321 1.00645 1.21441 0.95756 0.97817 0.99258 1.19150 0.91661 0.95147 1.06161 1.29584 1.01651 1.14467 1.24511 1.05106 0.72879 0.73246 0.78422 1.93531 1.83871 1.46500 1.74009 1.93515 1.83795 1.45512 1.73639 1.57714 1.23544 1.12991 1.89527 1.21727 0.95986 0.83864 0.99201 1.22093 0.98700 0.98519 0.97772 1.21669 0.97968 0.94539 1.00641 1.19459 0.94021 0.93700 0.94534 0.94183 1.21220 1.30225 1.10812 0.93148 0.94884 1.25925 0.94885 0.94802 1.02835 1.70060 1.36165 1.25128 1.27762 0.85948 0.78607 0.81253 0.78518 1.19147 1.21960 1.15510 1.21414 0.94810 0.83063 0.99219 1.21467 0.95509 0.97598 0.98641 1.21431 0.93571 0.99128 1.00260 0.89770 0.90101 0.90611 0.83689 0.85330 0.83336 0.81297 0.90717 0.87569 0.91116 0.88775 0.93819 0.93277 0.92647 0.90774 0.92474 0.83651 0.82846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.52 16 2 C -0.08 -1.50 5.88 -19.87 -0.12 -1.61 16 3 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 4 C -0.12 -3.05 9.70 22.27 0.22 -2.84 16 5 C -0.12 -2.93 5.14 -19.87 -0.10 -3.04 16 6 C -0.57 -13.66 6.31 71.24 0.45 -13.21 16 7 S 2.61 80.81 5.40 -56.49 -0.30 80.51 16 8 O -0.99 -38.04 16.73 -127.65 -2.14 -40.18 16 9 O -0.97 -32.07 16.71 -127.65 -2.13 -34.20 16 10 N -1.00 -31.69 3.21 -512.30 -1.65 -33.34 16 11 C 0.12 3.05 6.34 86.51 0.55 3.60 16 12 C -0.13 -3.46 6.10 30.82 0.19 -3.27 16 13 C -0.11 -4.02 5.14 30.62 0.16 -3.86 16 14 C 0.00 0.14 1.86 -11.47 -0.02 0.12 16 15 H 0.04 1.63 5.42 -2.39 -0.01 1.61 16 16 C -0.52 -27.96 8.87 25.60 0.23 -27.74 16 17 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 18 C 0.01 0.70 5.47 84.65 0.46 1.16 16 19 N -0.95 -58.24 13.96 21.45 0.30 -57.94 16 20 Si 0.93 41.53 26.84 68.60 1.84 43.37 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.23 -9.11 6.87 99.48 0.68 -8.42 16 24 C 0.14 5.43 5.58 86.36 0.48 5.92 16 25 C -0.11 -2.39 9.70 22.27 0.22 -2.18 16 26 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 29 H 0.07 0.72 8.09 -2.38 -0.02 0.70 16 30 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.15 3.44 8.09 -2.39 -0.02 3.42 16 33 H 0.17 2.95 8.08 -2.39 -0.02 2.93 16 34 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 2.26 7.09 -2.39 -0.02 2.24 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.04 1.68 8.02 -2.39 -0.02 1.66 16 39 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.07 2.97 7.10 -2.39 -0.02 2.96 16 42 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -73.52 366.84 0.72 -72.80 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.95 Total: 20.94 kcal Atomic # 6 Polarization: -55.80 SS G_CDS: 3.85 Total: -51.95 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -1.35 Total: -91.28 kcal Atomic # 8 Polarization: -70.11 SS G_CDS: -4.27 Total: -74.38 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.84 Total: 43.37 kcal Atomic # 16 Polarization: 80.81 SS G_CDS: -0.30 Total: 80.51 kcal Total: -73.52 0.72 -72.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.614 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds