Wall clock time and date at job start Tue Mar 31 2020 13:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 120.13972 * 2 1 4 4 C 1.37906 * 119.82689 * 180.20962 * 3 2 1 5 5 C 1.38981 * 120.58450 * 359.92937 * 4 3 2 6 6 C 1.37673 * 119.51374 * 359.64581 * 5 4 3 7 7 C 1.37955 * 120.14040 * 179.97438 * 2 1 3 8 8 C 1.50402 * 122.32038 * 181.13151 * 6 5 4 9 9 N 1.46679 * 109.90616 * 348.81361 * 8 6 5 10 10 S 1.65601 * 121.33932 * 224.30930 * 9 8 6 11 11 O 1.42100 * 104.27822 * 153.64481 * 10 9 8 12 12 O 1.42103 * 104.27772 * 25.79145 * 10 9 8 13 13 C 1.81399 * 104.44938 * 269.71797 * 10 9 8 14 14 C 1.52999 * 109.46810 * 179.97438 * 13 10 9 15 15 C 1.53006 * 109.46997 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47240 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00243 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47195 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46997 * 120.00167 * 20 18 16 23 23 H 1.48500 * 109.47074 * 240.00161 * 20 18 16 24 24 C 1.47238 * 117.32458 * 44.03846 * 9 8 6 25 25 C 1.50602 * 117.62817 * 179.53671 * 5 4 3 26 26 H 1.09003 * 109.47183 * 90.00570 * 1 2 3 27 27 H 1.09007 * 109.47065 * 210.00010 * 1 2 3 28 28 H 1.08998 * 109.47404 * 329.99884 * 1 2 3 29 29 H 1.07999 * 120.08994 * 0.23142 * 3 2 1 30 30 H 1.08007 * 119.71103 * 179.97438 * 4 3 2 31 31 H 1.07992 * 119.75182 * 0.06290 * 7 2 1 32 32 H 1.09005 * 109.39339 * 228.64155 * 8 6 5 33 33 H 1.08999 * 109.25475 * 108.90726 * 8 6 5 34 34 H 1.09000 * 109.47070 * 299.99993 * 13 10 9 35 35 H 1.09001 * 109.46593 * 59.99990 * 13 10 9 36 36 H 1.09000 * 109.47486 * 299.99969 * 14 13 10 37 37 H 1.09001 * 109.47362 * 60.00691 * 14 13 10 38 38 H 1.09000 * 109.46866 * 300.00212 * 15 14 13 39 39 H 1.08996 * 109.47261 * 59.99820 * 15 14 13 40 40 H 0.96992 * 120.00032 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.76926 * 55.63828 * 24 9 8 42 42 H 1.08998 * 109.76989 * 176.43569 * 24 9 8 43 43 H 1.09002 * 109.19806 * 39.58515 * 25 5 4 44 44 H 1.09000 * 109.16308 * 280.27260 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2012 1.1957 0.0000 4 6 3.5802 1.1882 -0.0044 5 6 4.2808 -0.0121 -0.0073 6 6 3.5881 -1.2018 0.0016 7 6 2.1997 -1.1930 0.0005 8 6 4.2817 -2.5362 0.0241 9 7 5.7148 -2.3585 -0.2334 10 16 6.5328 -3.3540 -1.2736 11 8 7.6163 -2.5607 -1.7387 12 8 5.5332 -3.8248 -2.1672 13 6 7.1373 -4.7054 -0.2254 14 6 7.9188 -5.7042 -1.0814 15 6 8.4281 -6.8445 -0.1974 16 6 9.1983 -7.8280 -1.0403 17 1 9.3134 -7.6567 -2.1005 18 6 9.7569 -8.9459 -0.4580 19 7 9.6172 -9.1543 0.8331 20 14 10.7110 -10.1654 -1.5029 21 1 10.7223 -9.7052 -2.9147 22 1 12.1061 -10.2608 -1.0027 23 1 10.0638 -11.4995 -1.4219 24 6 6.3954 -1.2556 0.4654 25 6 5.7852 0.0573 -0.0228 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 1.6650 2.1331 0.0038 30 1 4.1207 2.1233 -0.0048 31 1 1.6580 -2.1273 -0.0001 32 1 3.8525 -3.1803 -0.7434 33 1 4.1433 -2.9967 1.0023 34 1 7.7897 -4.3010 0.5485 35 1 6.2910 -5.2105 0.2401 36 1 7.2660 -6.1086 -1.8550 37 1 8.7651 -5.1995 -1.5473 38 1 9.0807 -6.4405 0.5765 39 1 7.5816 -7.3492 0.2682 40 1 10.0098 -9.9409 1.2427 41 1 6.2476 -1.3536 1.5408 42 1 7.4607 -1.2751 0.2355 43 1 6.1133 0.8686 0.6270 44 1 6.1238 0.2537 -1.0401 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594808813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:50 Heat of formation + Delta-G solvation = -89.464049 kcal Electronic energy + Delta-G solvation = -24791.034348 eV Core-core repulsion = 21219.387422 eV Total energy + Delta-G solvation = -3571.646926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95713 -38.31121 -37.84216 -37.07168 -36.47794 -34.17808 -34.14893 -32.86444 -31.00669 -29.66257 -27.85189 -26.12186 -25.52666 -23.93838 -23.01025 -22.37986 -21.07634 -19.59003 -18.69296 -18.57707 -17.57203 -17.30682 -16.69427 -16.51781 -16.34679 -16.21219 -15.77394 -15.48429 -15.24481 -14.54298 -14.52433 -14.43342 -14.08764 -13.91794 -13.66449 -13.58697 -13.51554 -13.31782 -13.22952 -13.04333 -12.93031 -12.80710 -12.78129 -12.63454 -12.58450 -12.16268 -12.11008 -11.83084 -11.77176 -11.59407 -11.38181 -11.11436 -10.58855 -10.11148 -9.59140 -9.28316 -8.23684 -6.34622 -0.83719 0.42400 0.46664 1.39171 1.39893 1.53172 1.60544 2.39173 2.76851 2.78888 3.07908 3.09940 3.52639 3.74020 3.77087 3.89557 3.99413 4.02996 4.10608 4.21313 4.37572 4.40672 4.45386 4.50412 4.56877 4.63370 4.67717 4.78824 4.83387 4.85967 4.91199 4.95174 5.01278 5.05316 5.13938 5.19327 5.34966 5.44404 5.45733 5.58136 5.61730 5.71741 5.76421 5.78501 6.14366 6.18672 6.81090 7.34782 8.88002 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.002464 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.870957 B =11362.677947 C =11724.915814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.091 4.091 6 C -0.101 4.101 7 C -0.129 4.129 8 C 0.151 3.849 9 N -1.000 6.000 10 S 2.624 3.376 11 O -0.982 6.982 12 O -0.987 6.987 13 C -0.605 4.605 14 C -0.107 4.107 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.112 3.888 25 C -0.096 4.096 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.004 0.996 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 22.549 2.912 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.091 4.091 6 C -0.102 4.102 7 C -0.147 4.147 8 C 0.026 3.974 9 N -0.838 5.838 10 S 2.722 3.278 11 O -0.973 6.973 12 O -0.978 6.978 13 C -0.736 4.736 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.589 4.589 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.012 4.012 25 C -0.134 4.134 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.150 22.588 2.103 27.848 hybrid contribution 0.663 -1.200 0.211 1.387 sum -15.488 21.388 2.314 26.508 Atomic orbital electron populations 1.20811 0.89474 1.03657 1.02866 1.20160 0.97404 0.92955 0.99302 1.21259 0.94219 0.98380 1.00684 1.21421 0.94704 0.97753 1.00263 1.19688 0.96022 0.92760 1.00673 1.19802 0.94135 0.94716 1.01560 1.21159 0.92938 0.99010 1.01603 1.20355 0.78294 0.95090 1.03636 1.57636 1.17791 1.44249 1.64130 1.04462 0.73252 0.75209 0.74914 1.93520 1.56857 1.67635 1.79259 1.93511 1.59061 1.82835 1.62373 1.30534 1.12225 1.15923 1.14926 1.21326 0.98862 0.96321 0.98099 1.18966 0.95105 0.92162 0.94489 1.21762 1.34008 1.07639 0.95534 0.92220 1.25940 0.97350 1.00035 0.96290 1.70074 1.46247 1.28942 1.11692 0.85422 0.78250 0.78464 0.79081 1.18838 1.20178 1.20185 1.21686 0.97117 0.84387 0.97997 1.20835 0.90866 0.98879 1.02842 0.90782 0.90903 0.90402 0.84159 0.84313 0.84727 0.88455 0.87771 0.83479 0.83627 0.91657 0.91553 0.97766 0.97806 0.92609 0.88227 0.88282 0.87079 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.02 71.24 0.71 -0.49 16 2 C -0.10 -1.59 5.87 -19.93 -0.12 -1.71 16 3 C -0.13 -1.97 9.71 22.20 0.22 -1.75 16 4 C -0.12 -2.05 9.59 22.37 0.21 -1.83 16 5 C -0.09 -1.78 5.76 -19.85 -0.11 -1.90 16 6 C -0.10 -2.08 5.81 -19.95 -0.12 -2.19 16 7 C -0.13 -2.36 9.28 22.35 0.21 -2.15 16 8 C 0.15 3.07 6.25 85.51 0.53 3.61 16 9 N -1.00 -22.58 3.19 -518.55 -1.66 -24.24 16 10 S 2.62 77.69 5.47 -56.49 -0.31 77.38 16 11 O -0.98 -34.00 16.77 -127.65 -2.14 -36.14 16 12 O -0.99 -35.03 16.62 -127.65 -2.12 -37.15 16 13 C -0.60 -18.16 6.18 71.98 0.44 -17.71 16 14 C -0.11 -4.36 5.16 30.60 0.16 -4.20 16 15 C 0.03 1.60 4.97 29.85 0.15 1.75 16 16 C -0.55 -31.44 9.11 25.60 0.23 -31.21 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 20 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 C 0.11 2.03 6.35 86.17 0.55 2.58 16 25 C -0.10 -1.66 5.87 29.75 0.17 -1.49 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.70 8.09 -2.38 -0.02 0.68 16 28 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.14 1.68 8.05 -2.91 -0.02 1.65 16 31 H 0.13 2.03 8.05 -2.91 -0.02 2.01 16 32 H 0.10 2.14 6.87 -2.38 -0.02 2.12 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 35 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 38 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.10 1.78 7.12 -2.39 -0.02 1.76 16 43 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.24 371.49 0.76 -74.48 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.97 Total: 12.91 kcal Atomic # 6 Polarization: -61.83 SS G_CDS: 3.71 Total: -58.12 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.37 Total: -79.63 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: -4.26 Total: -73.30 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 77.69 SS G_CDS: -0.31 Total: 77.38 kcal Total: -75.24 0.76 -74.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594808813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.982 kcal (2) G-P(sol) polarization free energy of solvation -75.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds