Wall clock time and date at job start Tue Mar 31 2020 14:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.99619 * 2 1 4 4 C 1.38234 * 119.99457 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99818 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00278 * 359.86148 * 4 3 2 7 7 C 1.38229 * 119.99734 * 0.09184 * 6 4 3 8 8 C 1.50703 * 119.99788 * 179.97438 * 7 6 4 9 9 N 1.46503 * 109.46993 * 90.00293 * 8 7 6 10 10 S 1.65598 * 120.00329 * 164.99599 * 9 8 7 11 11 O 1.42098 * 104.27880 * 181.07038 * 10 9 8 12 12 O 1.42095 * 104.28018 * 308.93466 * 10 9 8 13 13 C 1.81406 * 104.44578 * 65.00541 * 10 9 8 14 14 C 1.52997 * 109.47028 * 173.81465 * 13 10 9 15 15 C 1.50702 * 115.55048 * 65.19522 * 14 13 10 16 16 H 1.08001 * 119.99776 * 264.77957 * 15 14 13 17 17 C 1.37878 * 120.00218 * 84.78511 * 15 14 13 18 18 N 1.31510 * 119.99832 * 352.22137 * 17 15 14 19 19 Si 1.86801 * 119.99953 * 172.22740 * 17 15 14 20 20 H 1.48499 * 109.47233 * 59.99643 * 19 17 15 21 21 H 1.48501 * 109.46961 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46954 * 299.99605 * 19 17 15 23 23 C 1.52998 * 117.49689 * 279.52191 * 14 13 10 24 24 C 1.52996 * 117.49754 * 210.86215 * 14 13 10 25 25 C 1.38233 * 119.99943 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47202 * 270.02123 * 1 2 3 27 27 H 1.09000 * 109.47482 * 30.02302 * 1 2 3 28 28 H 1.09004 * 109.46841 * 150.02010 * 1 2 3 29 29 H 1.07992 * 120.00538 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46768 * 269.88296 * 5 4 3 31 31 H 1.09001 * 109.47228 * 29.88146 * 5 4 3 32 32 H 1.08998 * 109.47209 * 149.88988 * 5 4 3 33 33 H 1.08003 * 119.99741 * 180.37276 * 6 4 3 34 34 H 1.09001 * 109.47220 * 210.00300 * 8 7 6 35 35 H 1.09006 * 109.47342 * 330.00794 * 8 7 6 36 36 H 0.97009 * 119.99911 * 345.00113 * 9 8 7 37 37 H 1.09007 * 109.46699 * 293.81403 * 13 10 9 38 38 H 1.08997 * 109.47290 * 53.80772 * 13 10 9 39 39 H 0.96997 * 119.99938 * 185.02882 * 18 17 15 40 40 H 1.08992 * 117.50052 * 359.97438 * 23 14 13 41 41 H 1.08997 * 117.49753 * 145.02504 * 23 14 13 42 42 H 1.09000 * 117.50365 * 214.97795 * 24 14 13 43 43 H 1.09010 * 117.49977 * 359.97438 * 24 14 13 44 44 H 1.08001 * 120.00108 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0000 0.0018 7 6 3.5805 -1.1971 0.0028 8 6 4.3340 -2.5022 0.0048 9 7 4.5773 -2.9235 1.3867 10 16 5.0465 -4.4788 1.7078 11 8 5.1599 -4.5255 3.1235 12 8 4.0948 -5.2808 1.0222 13 6 6.6802 -4.6277 0.9333 14 6 7.2933 -5.9826 1.2925 15 6 6.5696 -7.1879 0.7497 16 1 5.8445 -7.7034 1.3620 17 6 6.8332 -7.6327 -0.5285 18 7 7.5980 -6.9212 -1.3275 19 14 6.1040 -9.2456 -1.1251 20 1 4.6220 -9.1691 -1.0704 21 1 6.5349 -9.4962 -2.5240 22 1 6.5749 -10.3535 -0.2556 23 6 7.9579 -6.1159 2.6641 24 6 8.8175 -6.0624 1.3987 25 6 2.1981 -1.1971 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6582 2.1324 0.0004 30 1 4.5170 2.8156 -1.0289 31 1 3.7442 3.2626 0.5109 32 1 5.2857 2.3726 0.5141 33 1 5.3517 0.0000 0.0075 34 1 3.7453 -3.2625 -0.5086 35 1 5.2869 -2.3725 -0.5085 36 1 4.4634 -2.2914 2.1137 37 1 6.5774 -4.5508 -0.1492 38 1 7.3276 -3.8286 1.2943 39 1 7.7245 -7.1959 -2.2492 40 1 7.9587 -5.2383 3.3104 41 1 7.8720 -7.0756 3.1738 42 1 9.2969 -6.9868 1.0765 43 1 9.3835 -5.1496 1.2122 44 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594840103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:57 Heat of formation + Delta-G solvation = -41.427109 kcal Electronic energy + Delta-G solvation = -25123.009545 eV Core-core repulsion = 21553.445657 eV Total energy + Delta-G solvation = -3569.563888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.78080 -36.74978 -36.26426 -35.49752 -35.01645 -33.67284 -32.03923 -31.65653 -28.15568 -27.64025 -26.82844 -25.69461 -25.43534 -21.20899 -20.91412 -20.86589 -19.70656 -18.63508 -16.99851 -16.56712 -16.35229 -15.95118 -15.75682 -15.07460 -14.72148 -14.40652 -14.29315 -14.04019 -13.74132 -13.40263 -13.38824 -13.15950 -13.03939 -12.87261 -12.72431 -12.05725 -11.95331 -11.88157 -11.80684 -11.45152 -11.27388 -11.15621 -11.11414 -11.02321 -10.90103 -10.85020 -10.59076 -10.45272 -10.11380 -9.72771 -9.21460 -8.95878 -8.79976 -8.66455 -8.55674 -8.08437 -6.13494 -4.24024 0.96708 1.25121 1.31606 3.33264 3.35066 3.39408 3.41902 3.74522 4.38003 4.48422 4.58718 4.61822 4.66071 5.01540 5.03171 5.12901 5.14852 5.16693 5.21846 5.32317 5.37588 5.40174 5.43501 5.49125 5.52265 5.66539 5.69111 5.74198 5.97730 6.00570 6.06829 6.11428 6.27121 6.37726 6.41308 6.43845 6.54995 6.61584 6.72739 6.90413 6.98773 7.22835 7.30236 7.39511 7.80924 8.21006 8.81242 9.47105 10.94171 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.003366 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.542452 B = 8315.853293 C = 8764.942297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.088 4.088 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.083 4.083 8 C 0.156 3.844 9 N -1.129 6.129 10 S 2.607 3.393 11 O -0.974 6.974 12 O -0.950 6.950 13 C -0.554 4.554 14 C 0.044 3.956 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.083 3.917 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.208 4.208 24 C -0.141 4.141 25 C -0.107 4.107 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 17.850 0.453 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.088 4.088 5 C -0.170 4.170 6 C -0.130 4.130 7 C -0.084 4.084 8 C 0.030 3.970 9 N -0.885 5.885 10 S 2.704 3.296 11 O -0.964 6.964 12 O -0.940 6.940 13 C -0.687 4.687 14 C 0.041 3.959 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.181 4.181 25 C -0.126 4.126 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.242 0.758 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.800 17.052 0.595 18.760 hybrid contribution 0.233 -0.160 -0.591 0.655 sum -7.567 16.891 0.004 18.509 Atomic orbital electron populations 1.20792 0.91161 1.02768 1.02373 1.19901 0.96086 0.93012 0.99631 1.20898 0.93512 0.97433 1.01959 1.19881 0.93802 0.95252 0.99821 1.20781 0.99930 0.93983 1.02300 1.20989 0.99939 0.91293 1.00755 1.19860 0.93811 0.94514 1.00248 1.20170 0.99578 0.94036 0.83243 1.56042 1.86421 1.32997 1.13088 1.05158 0.78043 0.71819 0.74595 1.93505 1.88191 1.85210 1.29536 1.93532 1.58452 1.66217 1.75759 1.29980 1.19337 1.05770 1.13632 1.18267 0.93207 0.89983 0.94408 1.20494 1.24050 1.10887 0.99973 0.91394 1.24943 0.93787 0.97030 0.96468 1.69963 1.36842 1.38487 1.05736 0.86657 0.80225 0.83765 0.77632 1.19444 1.21120 1.19897 1.23197 1.08492 1.01498 0.91377 1.22553 0.94679 1.00903 0.99921 1.21054 0.93585 0.97927 1.00012 0.91163 0.91680 0.91347 0.86299 0.91204 0.91694 0.91449 0.85737 0.89234 0.90889 0.75771 0.84842 0.88231 0.92676 0.90680 0.89532 0.89597 0.91541 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -0.91 5.88 -104.63 -0.62 -1.52 16 3 C -0.12 -1.18 9.36 -39.58 -0.37 -1.55 16 4 C -0.09 -0.88 5.88 -104.62 -0.62 -1.49 16 5 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 6 C -0.11 -1.23 9.36 -39.58 -0.37 -1.60 16 7 C -0.08 -1.02 5.28 -104.62 -0.55 -1.58 16 8 C 0.16 2.15 6.26 -5.19 -0.03 2.11 16 9 N -1.13 -17.15 5.88 -11.65 -0.07 -17.21 16 10 S 2.61 52.63 5.19 -107.50 -0.56 52.07 16 11 O -0.97 -21.54 18.08 -57.54 -1.04 -22.58 16 12 O -0.95 -22.59 17.16 -57.54 -0.99 -23.58 16 13 C -0.55 -11.51 5.93 37.16 0.22 -11.29 16 14 C 0.04 1.06 1.32 -155.66 -0.21 0.86 16 15 C -0.52 -14.13 8.18 -34.44 -0.28 -14.41 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C 0.08 2.25 5.38 -17.82 -0.10 2.15 16 18 N -0.87 -23.91 12.98 55.43 0.72 -23.19 16 19 Si 0.89 21.32 29.55 -169.99 -5.02 16.29 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 23 C -0.21 -4.59 9.96 -26.69 -0.27 -4.86 16 24 C -0.14 -3.22 9.49 -26.70 -0.25 -3.47 16 25 C -0.11 -1.29 9.36 -39.58 -0.37 -1.66 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.09 1.31 7.64 -51.93 -0.40 0.91 16 35 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.41 5.48 8.61 -34.47 -0.30 5.18 16 37 H 0.13 2.85 8.14 -51.92 -0.42 2.43 16 38 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 39 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 42 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 43 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 44 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -32.79 383.89 -11.25 -44.04 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.99 Total: 7.71 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: -3.09 Total: -39.34 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.65 Total: -40.40 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.03 Total: -46.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 52.63 SS G_CDS: -0.56 Total: 52.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.79 -11.25 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594840103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.611 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds