Wall clock time and date at job start Tue Mar 31 2020 14:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.99619 * 2 1 4 4 C 1.38234 * 119.99457 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99818 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00278 * 359.86148 * 4 3 2 7 7 C 1.38229 * 119.99734 * 0.09184 * 6 4 3 8 8 C 1.50703 * 119.99788 * 179.97438 * 7 6 4 9 9 N 1.46503 * 109.46993 * 90.00293 * 8 7 6 10 10 S 1.65598 * 120.00329 * 164.99599 * 9 8 7 11 11 O 1.42098 * 104.27880 * 181.07038 * 10 9 8 12 12 O 1.42095 * 104.28018 * 308.93466 * 10 9 8 13 13 C 1.81406 * 104.44578 * 65.00541 * 10 9 8 14 14 C 1.52997 * 109.47028 * 173.81465 * 13 10 9 15 15 C 1.50702 * 115.55048 * 65.19522 * 14 13 10 16 16 H 1.08001 * 119.99776 * 264.77957 * 15 14 13 17 17 C 1.37878 * 120.00218 * 84.78511 * 15 14 13 18 18 N 1.31510 * 119.99832 * 352.22137 * 17 15 14 19 19 Si 1.86801 * 119.99953 * 172.22740 * 17 15 14 20 20 H 1.48499 * 109.47233 * 59.99643 * 19 17 15 21 21 H 1.48501 * 109.46961 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46954 * 299.99605 * 19 17 15 23 23 C 1.52998 * 117.49689 * 279.52191 * 14 13 10 24 24 C 1.52996 * 117.49754 * 210.86215 * 14 13 10 25 25 C 1.38233 * 119.99943 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47202 * 270.02123 * 1 2 3 27 27 H 1.09000 * 109.47482 * 30.02302 * 1 2 3 28 28 H 1.09004 * 109.46841 * 150.02010 * 1 2 3 29 29 H 1.07992 * 120.00538 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46768 * 269.88296 * 5 4 3 31 31 H 1.09001 * 109.47228 * 29.88146 * 5 4 3 32 32 H 1.08998 * 109.47209 * 149.88988 * 5 4 3 33 33 H 1.08003 * 119.99741 * 180.37276 * 6 4 3 34 34 H 1.09001 * 109.47220 * 210.00300 * 8 7 6 35 35 H 1.09006 * 109.47342 * 330.00794 * 8 7 6 36 36 H 0.97009 * 119.99911 * 345.00113 * 9 8 7 37 37 H 1.09007 * 109.46699 * 293.81403 * 13 10 9 38 38 H 1.08997 * 109.47290 * 53.80772 * 13 10 9 39 39 H 0.96997 * 119.99938 * 185.02882 * 18 17 15 40 40 H 1.08992 * 117.50052 * 359.97438 * 23 14 13 41 41 H 1.08997 * 117.49753 * 145.02504 * 23 14 13 42 42 H 1.09000 * 117.50365 * 214.97795 * 24 14 13 43 43 H 1.09010 * 117.49977 * 359.97438 * 24 14 13 44 44 H 1.08001 * 120.00108 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0000 0.0018 7 6 3.5805 -1.1971 0.0028 8 6 4.3340 -2.5022 0.0048 9 7 4.5773 -2.9235 1.3867 10 16 5.0465 -4.4788 1.7078 11 8 5.1599 -4.5255 3.1235 12 8 4.0948 -5.2808 1.0222 13 6 6.6802 -4.6277 0.9333 14 6 7.2933 -5.9826 1.2925 15 6 6.5696 -7.1879 0.7497 16 1 5.8445 -7.7034 1.3620 17 6 6.8332 -7.6327 -0.5285 18 7 7.5980 -6.9212 -1.3275 19 14 6.1040 -9.2456 -1.1251 20 1 4.6220 -9.1691 -1.0704 21 1 6.5349 -9.4962 -2.5240 22 1 6.5749 -10.3535 -0.2556 23 6 7.9579 -6.1159 2.6641 24 6 8.8175 -6.0624 1.3987 25 6 2.1981 -1.1971 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6582 2.1324 0.0004 30 1 4.5170 2.8156 -1.0289 31 1 3.7442 3.2626 0.5109 32 1 5.2857 2.3726 0.5141 33 1 5.3517 0.0000 0.0075 34 1 3.7453 -3.2625 -0.5086 35 1 5.2869 -2.3725 -0.5085 36 1 4.4634 -2.2914 2.1137 37 1 6.5774 -4.5508 -0.1492 38 1 7.3276 -3.8286 1.2943 39 1 7.7245 -7.1959 -2.2492 40 1 7.9587 -5.2383 3.3104 41 1 7.8720 -7.0756 3.1738 42 1 9.2969 -6.9868 1.0765 43 1 9.3835 -5.1496 1.2122 44 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594840103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:56 Heat of formation + Delta-G solvation = -61.471564 kcal Electronic energy + Delta-G solvation = -25123.878738 eV Core-core repulsion = 21553.445657 eV Total energy + Delta-G solvation = -3570.433081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59795 -38.56358 -37.96872 -36.85387 -36.53166 -34.38030 -34.08191 -32.62264 -29.85059 -28.31673 -27.56136 -27.48566 -26.71717 -22.98795 -21.84616 -21.61637 -21.48474 -20.24651 -18.49275 -18.34272 -17.48478 -17.03572 -16.89481 -16.68056 -16.59048 -15.94476 -15.49620 -15.16937 -14.89946 -14.78209 -14.38661 -13.97080 -13.93550 -13.81375 -13.73345 -13.65048 -13.30887 -13.13611 -13.08943 -12.91796 -12.90179 -12.84630 -12.69694 -12.43697 -12.32904 -12.21448 -11.92391 -11.89385 -11.79707 -11.55472 -10.87734 -10.56883 -10.52131 -9.87732 -9.62399 -9.45582 -8.19023 -6.33546 -0.55123 0.37451 0.44433 1.39598 1.41359 1.48517 2.05499 2.40178 2.80423 2.93786 3.08128 3.38667 3.44186 3.64981 3.85243 3.94052 3.97730 4.23521 4.29872 4.35175 4.38191 4.50372 4.53337 4.54094 4.60372 4.69189 4.72317 4.81561 4.83273 4.87871 4.90915 4.98399 5.01560 5.08417 5.21764 5.26168 5.37634 5.47166 5.59406 5.61741 5.64146 5.71401 5.71965 6.10882 6.12148 6.23113 6.72127 7.38632 8.87791 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.003366 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.542452 B = 8315.853293 C = 8764.942297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.090 4.090 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.095 4.095 8 C 0.150 3.850 9 N -1.111 6.111 10 S 2.623 3.377 11 O -0.995 6.995 12 O -0.993 6.993 13 C -0.550 4.550 14 C 0.011 3.989 15 C -0.537 4.537 16 H 0.048 0.952 17 C 0.045 3.955 18 N -0.890 5.890 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.273 1.273 22 H -0.269 1.269 23 C -0.198 4.198 24 C -0.137 4.137 25 C -0.129 4.129 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.143 0.857 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.421 0.579 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.266 0.734 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 20.295 0.450 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.090 4.090 5 C -0.168 4.168 6 C -0.138 4.138 7 C -0.097 4.097 8 C 0.025 3.975 9 N -0.871 5.871 10 S 2.721 3.279 11 O -0.986 6.986 12 O -0.983 6.983 13 C -0.683 4.683 14 C 0.008 3.992 15 C -0.574 4.574 16 H 0.066 0.934 17 C -0.159 4.159 18 N -0.526 5.526 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.198 1.198 22 H -0.194 1.194 23 C -0.235 4.235 24 C -0.176 4.176 25 C -0.148 4.148 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.256 0.744 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.657 19.492 0.606 20.951 hybrid contribution 0.154 -0.837 -0.578 1.029 sum -7.503 18.655 0.027 20.107 Atomic orbital electron populations 1.20838 0.89611 1.03582 1.03010 1.20192 0.97381 0.92727 0.98929 1.21241 0.93751 0.98083 1.00900 1.20241 0.94195 0.96000 0.98586 1.20832 1.00044 0.92807 1.03157 1.21178 1.00674 0.91185 1.00780 1.19750 0.93879 0.94134 1.01892 1.20317 1.00556 0.94598 0.82029 1.55531 1.85768 1.31413 1.14370 1.04364 0.77521 0.72409 0.73602 1.93462 1.88370 1.86040 1.30695 1.93478 1.59934 1.68456 1.76449 1.29858 1.20071 1.05160 1.13235 1.18404 0.94027 0.90544 0.96193 1.20681 1.24153 1.12394 1.00219 0.93414 1.25492 0.94370 0.99309 0.96684 1.70003 1.37435 1.39324 1.05874 0.85987 0.79042 0.81190 0.77900 1.20296 1.19783 1.19363 1.23248 1.06918 1.02345 0.90963 1.22516 0.93933 1.01032 1.00157 1.21154 0.93807 0.98462 1.01403 0.90531 0.89933 0.91514 0.83903 0.90288 0.90348 0.90932 0.84542 0.90833 0.89206 0.74390 0.85642 0.84601 0.92493 0.88268 0.90014 0.91565 0.89243 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.95 16 2 C -0.09 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.12 -2.10 9.36 22.27 0.21 -1.89 16 4 C -0.09 -1.59 5.88 -19.86 -0.12 -1.71 16 5 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 6 C -0.12 -2.44 9.36 22.27 0.21 -2.23 16 7 C -0.09 -2.29 5.28 -19.87 -0.10 -2.39 16 8 C 0.15 4.11 6.26 85.63 0.54 4.65 16 9 N -1.11 -33.08 5.88 -190.77 -1.12 -34.20 16 10 S 2.62 105.88 5.19 -56.49 -0.29 105.59 16 11 O -1.00 -43.59 18.08 -127.65 -2.31 -45.90 16 12 O -0.99 -48.60 17.16 -127.65 -2.19 -50.79 16 13 C -0.55 -22.35 5.93 71.98 0.43 -21.93 16 14 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 15 C -0.54 -29.85 8.18 25.60 0.21 -29.64 16 16 H 0.05 2.76 7.83 -2.91 -0.02 2.74 16 17 C 0.04 2.44 5.38 84.66 0.46 2.90 16 18 N -0.89 -48.73 12.98 21.45 0.28 -48.45 16 19 Si 0.93 44.04 29.55 68.60 2.03 46.07 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.20 -8.48 9.96 30.62 0.30 -8.18 16 24 C -0.14 -6.11 9.49 30.62 0.29 -5.82 16 25 C -0.13 -3.10 9.36 22.27 0.21 -2.89 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 29 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 32 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.07 2.24 7.64 -2.39 -0.02 2.22 16 35 H 0.09 2.13 8.09 -2.38 -0.02 2.11 16 36 H 0.42 10.80 8.61 -96.74 -0.83 9.96 16 37 H 0.13 5.32 8.14 -2.39 -0.02 5.30 16 38 H 0.14 4.40 8.09 -2.39 -0.02 4.38 16 39 H 0.27 13.86 8.32 -92.71 -0.77 13.09 16 40 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 44 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -70.36 383.89 0.41 -69.94 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.15 Total: 29.90 kcal Atomic # 6 Polarization: -76.03 SS G_CDS: 3.87 Total: -72.17 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -0.84 Total: -82.65 kcal Atomic # 8 Polarization: -92.19 SS G_CDS: -4.50 Total: -96.69 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 105.88 SS G_CDS: -0.29 Total: 105.59 kcal Total: -70.36 0.41 -69.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594840103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.471 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds