Wall clock time and date at job start Tue Mar 31 2020 13:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48494 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47100 * 300.00047 * 3 2 1 6 6 H 1.48502 * 109.47134 * 59.99594 * 3 2 1 7 7 C 1.39945 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99552 * 162.21674 * 7 2 1 9 9 C 1.41398 * 120.00000 * 342.20778 * 7 2 1 10 10 C 1.40731 * 120.24554 * 335.28968 * 9 7 2 11 11 C 1.37596 * 119.74397 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24810 * 359.71297 * 11 10 9 13 13 C 1.38613 * 120.50118 * 0.56308 * 12 11 10 14 14 S 1.76198 * 119.87611 * 179.71579 * 13 12 11 15 15 O 1.42101 * 106.40321 * 156.18539 * 14 13 12 16 16 O 1.42104 * 106.40309 * 23.26790 * 14 13 12 17 17 N 1.65597 * 107.21902 * 269.72566 * 14 13 12 18 18 C 1.46496 * 119.99852 * 64.72846 * 17 14 13 19 19 C 1.53006 * 109.47237 * 165.27338 * 18 17 14 20 20 C 1.52999 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46875 * 180.02562 * 20 19 18 22 22 C 1.53786 * 113.61154 * 274.13626 * 21 20 19 23 23 C 1.53954 * 87.02090 * 220.04881 * 22 21 20 24 24 C 1.53778 * 113.61712 * 176.53152 * 21 20 19 25 25 C 1.37639 * 120.24851 * 359.44127 * 13 12 11 26 26 H 0.97003 * 120.00119 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.12911 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.87720 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.75160 * 180.29716 * 12 11 10 30 30 H 0.96994 * 120.00329 * 244.99762 * 17 14 13 31 31 H 1.09000 * 109.47130 * 285.26921 * 18 17 14 32 32 H 1.09000 * 109.47757 * 45.27214 * 18 17 14 33 33 H 1.08991 * 109.46851 * 299.99915 * 19 18 17 34 34 H 1.09006 * 109.46698 * 59.99755 * 19 18 17 35 35 H 1.09000 * 109.47439 * 299.99619 * 20 19 18 36 36 H 1.08998 * 109.47258 * 59.99790 * 20 19 18 37 37 H 1.08993 * 112.85620 * 45.32819 * 21 20 19 38 38 H 1.09005 * 113.61276 * 334.56697 * 22 21 20 39 39 H 1.09000 * 113.61886 * 105.47247 * 22 21 20 40 40 H 1.08998 * 113.54076 * 270.81232 * 23 22 21 41 41 H 1.08998 * 113.74635 * 139.93722 * 23 22 21 42 42 H 1.09003 * 113.61612 * 254.52435 * 24 21 20 43 43 H 1.09003 * 113.61802 * 25.34015 * 24 21 20 44 44 H 1.07994 * 120.12981 * 180.24938 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0492 -1.2341 -0.2862 9 6 1.3517 -2.4074 0.3731 10 6 0.2236 -2.3639 1.2134 11 6 -0.4068 -3.5335 1.5709 12 6 0.0618 -4.7512 1.1018 13 6 1.1755 -4.8064 0.2782 14 16 1.7614 -6.3634 -0.3024 15 8 2.4871 -6.0996 -1.4952 16 8 0.6559 -7.2545 -0.2462 17 7 2.8637 -6.9156 0.8032 18 6 2.4338 -7.2449 2.1644 19 6 3.5252 -8.0605 2.8607 20 6 3.0765 -8.4038 4.2825 21 6 4.1681 -9.2189 4.9789 22 6 4.0791 -10.7293 4.7039 23 6 4.4444 -10.9390 6.1848 24 6 3.8510 -9.5449 6.4479 25 6 1.8219 -3.6492 -0.0922 26 1 -0.4850 0.8401 0.0004 27 1 -0.1455 -1.4162 1.5768 28 1 -1.2730 -3.5026 2.2153 29 1 -0.4420 -5.6640 1.3836 30 1 3.7946 -7.0174 0.5507 31 1 2.2563 -6.3252 2.7218 32 1 1.5141 -7.8285 2.1240 33 1 3.7028 -8.9801 2.3033 34 1 4.4449 -7.4768 2.9012 35 1 2.8992 -7.4839 4.8397 36 1 2.1567 -8.9872 4.2424 37 1 5.1655 -8.8059 4.8289 38 1 3.0748 -11.0684 4.4498 39 1 4.8377 -11.0924 4.0106 40 1 5.5179 -10.9975 6.3642 41 1 3.8906 -11.7466 6.6634 42 1 4.4257 -8.9531 7.1604 43 1 2.7843 -9.5581 6.6719 44 1 2.6869 -3.6941 -0.7372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594859352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:26 Heat of formation + Delta-G solvation = -80.966300 kcal Electronic energy + Delta-G solvation = -24503.107656 eV Core-core repulsion = 20931.829220 eV Total energy + Delta-G solvation = -3571.278436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81066 -39.44781 -38.28049 -37.03108 -36.89052 -35.66949 -33.11063 -31.91908 -31.58870 -27.95469 -27.34956 -26.39564 -24.01221 -23.66821 -22.80751 -22.17942 -20.55314 -20.17608 -19.60444 -18.39002 -17.73805 -17.33114 -16.88408 -16.58057 -16.47467 -16.04232 -15.93949 -15.31157 -15.14332 -15.02038 -14.32319 -14.31464 -13.96118 -13.70472 -13.28333 -13.23688 -13.21063 -13.11683 -13.07050 -13.04504 -12.85590 -12.76408 -12.59345 -12.48937 -12.19249 -12.08430 -11.68560 -11.54467 -11.35324 -11.32915 -11.15365 -10.91697 -10.83331 -10.38738 -9.85022 -9.56216 -8.73821 -6.45780 -0.47788 0.40619 0.83584 1.37083 1.44315 1.52558 2.14938 2.18821 2.54700 2.80163 3.46791 3.51257 3.74327 3.83409 3.86595 4.05667 4.10768 4.21429 4.29826 4.41158 4.44970 4.57617 4.69478 4.84376 4.85568 4.87765 4.90017 4.93465 4.96328 5.04144 5.06553 5.13578 5.14659 5.18851 5.21395 5.34258 5.41062 5.46182 5.54675 5.56428 5.73298 5.88346 5.93490 6.09812 6.15948 6.52187 6.79333 6.84246 8.24705 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002813 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.498964 B = 9950.881950 C =10811.554502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.080 0.920 9 C 0.061 3.939 10 C -0.140 4.140 11 C -0.122 4.122 12 C -0.147 4.147 13 C -0.638 4.638 14 S 2.720 3.280 15 O -0.998 6.998 16 O -0.988 6.988 17 N -1.105 6.105 18 C 0.108 3.892 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.110 4.110 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.147 4.147 26 H 0.292 0.708 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.426 0.574 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -14.279 11.643 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.098 0.902 9 C 0.058 3.942 10 C -0.160 4.160 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.727 4.727 14 S 2.812 3.188 15 O -0.989 6.989 16 O -0.978 6.978 17 N -0.867 5.867 18 C -0.017 4.017 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.128 4.128 22 C -0.178 4.178 23 C -0.181 4.181 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.102 0.898 27 H 0.131 0.869 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.263 0.737 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.664 -14.553 10.903 19.367 hybrid contribution 0.365 1.597 0.052 1.639 sum 7.028 -12.956 10.955 18.365 Atomic orbital electron populations 1.69831 1.09033 1.30949 1.35255 1.26796 0.95547 1.04678 0.91035 0.85106 0.79420 0.75852 0.79049 1.18082 1.19195 1.18511 1.19886 0.98611 0.92233 1.41919 0.90196 1.18062 0.92723 0.92992 0.90432 1.21644 0.98262 0.97666 0.98443 1.21153 0.99798 0.92648 1.00554 1.20485 0.96879 0.98203 1.01173 1.30256 1.08796 1.19086 1.14521 1.00750 0.72685 0.73080 0.72289 1.93499 1.73204 1.86374 1.45787 1.93488 1.53849 1.63588 1.86859 1.55185 1.24002 1.82324 1.25223 1.21550 0.99486 1.00155 0.80556 1.21720 0.97659 1.00078 0.96040 1.21530 0.98508 1.00396 0.94278 1.22550 0.99281 0.95247 0.95744 1.23041 1.01960 0.95926 0.96842 1.22853 1.01168 0.97377 0.96692 1.22967 1.01343 0.97142 0.96380 1.20836 1.01780 0.92218 1.01927 0.89753 0.86939 0.85466 0.84945 0.73714 0.91674 0.90383 0.90461 0.90555 0.91531 0.91287 0.89129 0.90132 0.91496 0.89983 0.91335 0.91528 0.90076 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.09 10.97 21.83 0.24 -41.85 16 2 C 0.03 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.99 37.23 29.59 68.60 2.03 39.26 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 7 C -0.50 -26.41 9.05 23.46 0.21 -26.20 16 8 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 9 C 0.06 3.26 5.57 -21.29 -0.12 3.14 16 10 C -0.14 -7.12 8.70 22.73 0.20 -6.92 16 11 C -0.12 -5.40 10.02 22.22 0.22 -5.18 16 12 C -0.15 -6.15 9.53 22.46 0.21 -5.94 16 13 C -0.64 -27.61 5.93 22.22 0.13 -27.48 16 14 S 2.72 99.07 5.73 -56.49 -0.32 98.75 16 15 O -1.00 -41.91 17.27 -128.00 -2.21 -44.12 16 16 O -0.99 -38.81 16.74 -128.00 -2.14 -40.96 16 17 N -1.10 -28.98 6.00 -187.49 -1.12 -30.11 16 18 C 0.11 2.44 6.22 86.38 0.54 2.97 16 19 C -0.12 -1.91 5.35 30.60 0.16 -1.75 16 20 C -0.11 -1.62 5.04 30.59 0.15 -1.47 16 21 C -0.11 -1.47 3.64 -10.27 -0.04 -1.50 16 22 C -0.14 -1.79 7.65 31.18 0.24 -1.55 16 23 C -0.14 -1.69 8.09 31.18 0.25 -1.44 16 24 C -0.14 -1.79 7.65 31.12 0.24 -1.55 16 25 C -0.15 -7.22 9.26 22.73 0.21 -7.01 16 26 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 27 H 0.11 5.86 6.18 -2.91 -0.02 5.85 16 28 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 29 H 0.13 4.81 7.59 -2.91 -0.02 4.78 16 30 H 0.43 9.06 8.65 -96.75 -0.84 8.22 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.77 7.76 -2.39 -0.02 1.75 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.01 7.88 -2.39 -0.02 0.99 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.04 7.92 -2.38 -0.02 1.02 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.03 8.10 -2.39 -0.02 1.01 16 44 H 0.11 5.26 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -65.55 373.67 -0.32 -65.87 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.16 Total: 32.89 kcal Atomic # 6 Polarization: -82.79 SS G_CDS: 3.05 Total: -79.74 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -0.88 Total: -71.96 kcal Atomic # 8 Polarization: -80.72 SS G_CDS: -4.35 Total: -85.07 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Atomic # 16 Polarization: 99.07 SS G_CDS: -0.32 Total: 98.75 kcal Total: -65.55 -0.32 -65.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594859352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.092 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds