Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 115.55636 * 2 1 4 4 C 1.52994 * 117.50264 * 214.30888 * 2 1 3 5 5 C 1.53002 * 117.49871 * 145.68262 * 2 1 3 6 6 N 1.46504 * 117.51565 * 214.97553 * 5 2 1 7 7 S 1.65603 * 119.99917 * 207.76416 * 6 5 2 8 8 O 1.42098 * 104.27937 * 178.30370 * 7 6 5 9 9 O 1.42102 * 104.27795 * 306.16418 * 7 6 5 10 10 C 1.81404 * 104.44782 * 62.22942 * 7 6 5 11 11 C 1.53003 * 109.46996 * 179.97438 * 10 7 6 12 12 C 1.50694 * 109.47095 * 180.02562 * 11 10 7 13 13 H 1.08005 * 120.00292 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00338 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99582 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00331 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46861 * 90.00119 * 16 14 12 18 18 H 1.48496 * 109.46986 * 209.99839 * 16 14 12 19 19 H 1.48501 * 109.47098 * 330.00095 * 16 14 12 20 20 C 1.50694 * 117.50083 * 0.02562 * 5 2 1 21 21 C 1.38236 * 120.00237 * 280.95405 * 20 5 2 22 22 C 1.38238 * 119.99912 * 179.97438 * 21 20 5 23 23 C 1.38225 * 120.00169 * 359.97438 * 22 21 20 24 24 C 1.38239 * 120.00180 * 359.97438 * 23 22 21 25 25 C 1.38231 * 120.00083 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47103 * 280.16446 * 1 2 3 27 27 H 1.08998 * 109.47396 * 40.17209 * 1 2 3 28 28 H 1.09002 * 109.46461 * 160.17190 * 1 2 3 29 29 H 1.09001 * 109.46711 * 205.68340 * 3 2 1 30 30 H 1.08994 * 109.47092 * 325.68536 * 3 2 1 31 31 H 1.08999 * 109.47180 * 85.68851 * 3 2 1 32 32 H 1.09002 * 117.50045 * 145.02250 * 4 2 1 33 33 H 1.08997 * 117.51761 * 359.97438 * 4 2 1 34 34 H 0.96993 * 120.00050 * 27.75926 * 6 5 2 35 35 H 1.08994 * 109.47540 * 299.99968 * 10 7 6 36 36 H 1.09002 * 109.47102 * 60.00810 * 10 7 6 37 37 H 1.09002 * 109.47259 * 300.00465 * 11 10 7 38 38 H 1.09003 * 109.46899 * 60.00133 * 11 10 7 39 39 H 0.96999 * 119.99789 * 180.02562 * 15 14 12 40 40 H 1.08002 * 119.99713 * 0.25690 * 21 20 5 41 41 H 1.07997 * 119.99306 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00216 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.00220 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.00527 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7651 6 7 3.4934 -0.7909 1.4416 7 16 4.6370 -1.9641 1.6824 8 8 5.7108 -1.2822 2.3158 9 8 3.9359 -3.0054 2.3484 10 6 5.1110 -2.4841 0.0104 11 6 6.1763 -3.5788 0.0996 12 6 6.5705 -4.0103 -1.2894 13 1 6.1073 -3.5502 -2.1498 14 6 7.5219 -4.9933 -1.4620 15 7 8.0856 -5.5539 -0.4144 16 14 8.0101 -5.5287 -3.1837 17 1 9.1438 -4.6953 -3.6584 18 1 8.4204 -6.9557 -3.1606 19 1 6.8542 -5.3607 -4.1008 20 6 1.3721 -2.1408 1.4606 21 6 0.7889 -1.8384 2.6768 22 6 -0.0045 -2.7739 3.3145 23 6 -0.2149 -4.0113 2.7357 24 6 0.3675 -4.3133 1.5189 25 6 1.1599 -3.3777 0.8807 26 1 -0.3633 0.1814 1.0115 27 1 -0.3634 0.7852 -0.6629 28 1 -0.3632 -0.9668 -0.3486 29 1 3.1823 1.3085 -0.4454 30 1 1.5811 2.0742 -0.5793 31 1 2.2771 1.7414 1.0247 32 1 3.1717 -0.8751 -1.2682 33 1 1.6117 -1.8589 -1.2679 34 1 3.6557 0.1149 1.7484 35 1 4.2357 -2.8702 -0.5119 36 1 5.5127 -1.6304 -0.5354 37 1 7.0516 -3.1923 0.6218 38 1 5.7751 -4.4326 0.6456 39 1 8.7552 -6.2452 -0.5358 40 1 0.9493 -0.8697 3.1267 41 1 -0.4598 -2.5377 4.2649 42 1 -0.8344 -4.7423 3.2340 43 1 0.2034 -5.2803 1.0668 44 1 1.6153 -3.6137 -0.0697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595413372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = -57.081826 kcal Electronic energy + Delta-G solvation = -26196.400964 eV Core-core repulsion = 22626.158237 eV Total energy + Delta-G solvation = -3570.242727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12208 -38.78294 -38.10428 -36.97787 -35.90437 -34.02206 -33.14617 -31.94937 -31.69719 -29.36811 -28.18962 -27.59300 -24.51243 -23.58979 -23.30150 -21.72169 -20.28439 -20.02665 -19.01498 -18.24850 -18.09063 -17.08588 -16.96129 -16.53073 -16.36359 -15.97620 -15.64496 -15.21884 -15.15456 -14.67631 -14.46134 -14.20249 -14.01106 -13.73877 -13.68139 -13.57906 -13.29845 -13.16962 -12.99852 -12.93498 -12.92213 -12.81465 -12.58939 -12.29577 -12.25572 -12.10760 -12.07868 -11.93636 -11.80444 -11.60336 -11.11829 -10.68629 -10.64656 -10.27371 -9.70705 -9.48732 -8.25564 -6.39583 -0.69148 0.48511 0.60559 1.40951 1.42819 1.53885 1.78162 2.38124 2.53083 2.77576 2.99682 3.08067 3.29878 3.40098 3.72326 3.76831 3.95510 4.10602 4.12963 4.18191 4.21222 4.30827 4.33689 4.64171 4.72804 4.74821 4.82061 4.83627 4.91493 5.00651 5.09260 5.09420 5.11883 5.21967 5.23035 5.26046 5.27003 5.32732 5.50016 5.64760 5.68314 5.69288 5.75100 6.05320 6.07690 6.20512 6.73842 7.30621 8.86955 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.004222 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.194623 B = 6629.981741 C = 6990.740603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.125 4.125 4 C -0.183 4.183 5 C 0.116 3.884 6 N -1.069 6.069 7 S 2.609 3.391 8 O -1.005 7.005 9 O -0.980 6.980 10 C -0.583 4.583 11 C 0.025 3.975 12 C -0.535 4.535 13 H 0.077 0.923 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.256 1.256 20 C -0.057 4.057 21 C -0.108 4.108 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.118 4.118 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.424 0.576 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.002 0.998 38 H 0.005 0.995 39 H 0.267 0.733 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.194 12.468 0.067 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.182 4.182 4 C -0.221 4.221 5 C 0.026 3.974 6 N -0.827 5.827 7 S 2.707 3.293 8 O -0.995 6.995 9 O -0.969 6.969 10 C -0.716 4.716 11 C -0.014 4.014 12 C -0.574 4.574 13 H 0.095 0.905 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.180 1.180 20 C -0.059 4.059 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.137 4.137 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.262 0.738 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.020 0.980 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.778 11.898 0.971 23.101 hybrid contribution 0.968 -0.351 -0.813 1.312 sum -18.809 11.548 0.159 22.072 Atomic orbital electron populations 1.21400 0.90260 1.02727 1.02706 1.21970 0.95813 0.91118 0.98782 1.21460 1.00771 0.92957 1.02972 1.24117 1.04139 1.02277 0.91584 1.19160 0.86467 1.01407 0.90354 1.54737 1.27357 1.25897 1.74737 1.04825 0.72796 0.73748 0.77959 1.93497 1.56617 1.74178 1.75203 1.93542 1.72371 1.58554 1.72462 1.30340 1.09671 1.09760 1.21779 1.18777 0.91891 0.91818 0.98902 1.21487 1.22658 1.20889 0.92375 0.90454 1.26113 0.96009 0.96206 1.01820 1.70111 1.28114 1.27222 1.32062 0.85323 0.79067 0.77331 0.78617 1.19629 1.20927 1.17956 1.19039 0.97409 0.93759 0.95672 1.21068 0.96990 1.00120 0.94481 1.21396 0.99083 0.93936 1.00468 1.21439 1.00045 0.97311 0.95551 1.21364 0.97740 0.99573 0.96237 1.21197 0.98438 0.93240 1.00802 0.91756 0.90008 0.92521 0.91877 0.89796 0.91326 0.86918 0.86552 0.73820 0.84160 0.84081 0.97987 0.97713 0.92442 0.85560 0.84088 0.84102 0.84780 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.83 71.98 0.64 -0.98 16 2 C -0.07 -1.25 2.70 -52.18 -0.14 -1.39 16 3 C -0.12 -1.68 8.89 71.98 0.64 -1.04 16 4 C -0.18 -3.63 7.65 30.59 0.23 -3.39 16 5 C 0.12 2.71 2.19 2.86 0.01 2.72 16 6 N -1.07 -28.25 5.57 -155.18 -0.86 -29.11 16 7 S 2.61 98.32 5.45 -56.49 -0.31 98.01 16 8 O -1.00 -44.16 18.08 -127.65 -2.31 -46.47 16 9 O -0.98 -42.63 16.38 -127.65 -2.09 -44.72 16 10 C -0.58 -22.65 5.30 71.98 0.38 -22.27 16 11 C 0.02 1.33 4.98 29.85 0.15 1.48 16 12 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 13 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 14 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 15 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 16 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 C -0.06 -1.51 2.71 -19.87 -0.05 -1.56 16 21 C -0.11 -2.69 9.50 22.27 0.21 -2.48 16 22 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 23 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 24 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 25 C -0.12 -3.25 9.10 22.27 0.20 -3.05 16 26 H 0.06 0.91 7.97 -2.39 -0.02 0.89 16 27 H 0.08 0.86 8.02 -2.39 -0.02 0.85 16 28 H 0.06 0.88 7.80 -2.39 -0.02 0.86 16 29 H 0.06 0.89 7.90 -2.39 -0.02 0.87 16 30 H 0.08 0.85 7.99 -2.39 -0.02 0.83 16 31 H 0.07 0.85 7.85 -2.39 -0.02 0.83 16 32 H 0.11 2.17 7.76 -2.39 -0.02 2.15 16 33 H 0.12 2.13 7.13 -2.39 -0.02 2.11 16 34 H 0.42 9.16 7.86 -96.75 -0.76 8.40 16 35 H 0.14 4.82 7.21 -2.39 -0.02 4.80 16 36 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 44 H 0.12 3.19 7.08 -2.91 -0.02 3.17 16 Total: -1.00 -77.16 373.47 0.60 -76.56 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.23 Total: 27.19 kcal Atomic # 6 Polarization: -73.26 SS G_CDS: 3.63 Total: -69.63 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -0.58 Total: -86.16 kcal Atomic # 8 Polarization: -86.79 SS G_CDS: -4.40 Total: -91.19 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 98.32 SS G_CDS: -0.31 Total: 98.01 kcal Total: -77.16 0.60 -76.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595413372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.483 kcal (2) G-P(sol) polarization free energy of solvation -77.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds