Wall clock time and date at job start Tue Mar 31 2020 14:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 120.00072 * 2 1 4 4 C 1.52996 * 109.46978 * 275.00017 * 3 2 1 5 5 H 1.08999 * 115.55373 * 29.27705 * 4 3 2 6 6 C 1.53005 * 117.49893 * 243.60681 * 4 3 2 7 7 C 1.52998 * 59.99965 * 252.51127 * 6 4 3 8 8 C 1.53001 * 117.50140 * 252.50705 * 7 6 4 9 9 C 1.53004 * 117.49764 * 107.48839 * 7 6 4 10 10 S 1.65606 * 120.00132 * 180.02562 * 2 1 3 11 11 O 1.42097 * 106.39996 * 336.45896 * 10 2 1 12 12 O 1.42095 * 106.39952 * 203.54055 * 10 2 1 13 13 C 1.76199 * 107.21900 * 89.99987 * 10 2 1 14 14 C 1.38658 * 119.87671 * 89.99870 * 13 10 2 15 15 C 1.38602 * 120.50273 * 180.02562 * 14 13 10 16 16 C 1.37640 * 120.24802 * 359.95557 * 15 14 13 17 17 C 1.40693 * 119.74757 * 0.02562 * 16 15 14 18 18 C 1.41395 * 120.24974 * 179.97438 * 17 16 15 19 19 H 1.07991 * 120.00430 * 206.61611 * 18 17 16 20 20 C 1.39953 * 119.99520 * 26.61769 * 18 17 16 21 21 N 1.30828 * 119.99902 * 25.17602 * 20 18 17 22 22 Si 1.86797 * 119.99794 * 205.17846 * 20 18 17 23 23 H 1.48497 * 109.47077 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47133 * 300.00013 * 22 20 18 25 25 H 1.48498 * 109.46931 * 60.00003 * 22 20 18 26 26 C 1.37596 * 119.87555 * 270.26198 * 13 10 2 27 27 H 1.09000 * 109.47228 * 269.99865 * 1 2 3 28 28 H 1.09001 * 109.47291 * 30.00287 * 1 2 3 29 29 H 1.08998 * 109.47169 * 149.99800 * 1 2 3 30 30 H 1.08997 * 109.46905 * 34.99777 * 3 2 1 31 31 H 1.09002 * 109.46830 * 154.99564 * 3 2 1 32 32 H 1.09005 * 117.49627 * 359.97438 * 6 4 3 33 33 H 1.08998 * 117.49939 * 145.02031 * 6 4 3 34 34 H 1.08999 * 109.47217 * 128.61646 * 8 7 6 35 35 H 1.08990 * 109.47303 * 248.62570 * 8 7 6 36 36 H 1.09006 * 109.46580 * 8.62406 * 8 7 6 37 37 H 1.08995 * 109.47050 * 351.37514 * 9 7 6 38 38 H 1.09002 * 109.47290 * 111.38348 * 9 7 6 39 39 H 1.09004 * 109.46782 * 231.37524 * 9 7 6 40 40 H 1.08005 * 119.74524 * 0.02562 * 14 13 10 41 41 H 1.08000 * 119.87963 * 179.97438 * 15 14 13 42 42 H 1.08004 * 120.12743 * 179.97438 * 16 15 14 43 43 H 0.96992 * 120.00179 * 5.83974 * 21 20 18 44 44 H 1.08001 * 120.12717 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 1.5477 1.4800 -2.1215 6 6 3.7595 1.8845 -2.0062 7 6 2.9801 3.1495 -1.6413 8 6 2.4505 4.0093 -2.7907 9 6 3.4218 3.9159 -0.3928 10 16 2.2930 -1.4342 -0.0006 11 8 1.4113 -2.4067 0.5434 12 8 3.5759 -1.1570 0.5439 13 6 2.5538 -1.8851 -1.6839 14 6 3.6972 -1.4607 -2.3434 15 6 3.9152 -1.8074 -3.6676 16 6 2.9969 -2.5792 -4.3424 17 6 1.8332 -3.0159 -3.6832 18 6 0.8825 -3.8088 -4.3665 19 1 -0.1535 -3.7920 -4.0621 20 6 1.2842 -4.6154 -5.4373 21 7 2.5217 -5.0331 -5.5134 22 14 0.0535 -5.0954 -6.7580 23 1 0.7240 -5.9461 -7.7738 24 1 -1.0661 -5.8505 -6.1403 25 1 -0.4757 -3.8707 -7.4101 26 6 1.6194 -2.6526 -2.3405 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1177 0.4344 32 1 4.5869 1.5986 -1.3566 33 1 3.8949 1.6647 -3.0651 34 1 1.3884 4.2025 -2.6404 35 1 2.9918 4.9549 -2.8164 36 1 2.5940 3.4827 -3.7343 37 1 4.1663 3.3316 0.1478 38 1 3.8541 4.8722 -0.6874 39 1 2.5593 4.0900 0.2506 40 1 4.4235 -0.8553 -1.8213 41 1 4.8092 -1.4710 -4.1717 42 1 3.1685 -2.8479 -5.3743 43 1 3.1390 -4.8557 -4.7866 44 1 0.7276 -2.9789 -1.8260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595424286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:23 Heat of formation + Delta-G solvation = -62.524359 kcal Electronic energy + Delta-G solvation = -26119.242148 eV Core-core repulsion = 22548.763414 eV Total energy + Delta-G solvation = -3570.478733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88843 -39.65642 -38.38389 -37.02026 -36.68657 -35.90960 -31.91570 -31.51956 -30.67040 -28.77721 -28.01324 -27.18332 -25.88577 -23.71293 -23.05804 -22.02141 -20.54785 -19.75304 -19.58883 -18.64202 -17.97425 -17.31105 -16.76815 -16.26612 -15.92813 -15.86677 -15.59736 -15.23524 -15.14664 -14.57569 -14.46577 -14.35367 -14.17110 -13.98905 -13.58498 -13.35919 -13.29725 -13.23156 -13.16561 -13.10835 -12.96290 -12.75106 -12.65989 -12.55181 -12.45571 -12.36685 -11.99439 -11.96681 -11.56379 -11.47314 -10.97525 -10.70353 -10.54578 -10.07478 -9.94197 -9.74341 -9.25863 -6.57345 -0.61662 0.23913 0.75742 1.48667 1.57254 1.77557 1.95051 2.29589 2.49402 2.67450 2.81877 3.29291 3.31770 3.72091 3.76653 3.94732 4.02112 4.15295 4.24080 4.33852 4.36124 4.55232 4.56154 4.57577 4.72710 4.73836 4.83855 4.87645 4.91956 4.94432 5.00069 5.02430 5.11150 5.13218 5.15147 5.18158 5.32157 5.33686 5.42572 5.54246 5.56508 5.63957 5.68874 5.70969 6.01536 6.14514 6.62122 6.79342 7.96309 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014165 B = 0.004294 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.245657 B = 6518.826958 C = 7306.283996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.990 5.990 3 C 0.145 3.855 4 C -0.177 4.177 5 H 0.096 0.904 6 C -0.183 4.183 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.119 4.119 10 S 2.706 3.294 11 O -0.993 6.993 12 O -0.982 6.982 13 C -0.627 4.627 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.188 4.188 17 C 0.054 3.946 18 C -0.558 4.558 19 H 0.076 0.924 20 C 0.005 3.995 21 N -0.817 5.817 22 Si 1.117 2.883 23 H -0.271 1.271 24 H -0.258 1.258 25 H -0.261 1.261 26 C -0.143 4.143 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.282 0.718 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 16.982 6.257 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.829 5.829 3 C 0.021 3.979 4 C -0.197 4.197 5 H 0.114 0.886 6 C -0.220 4.220 7 C -0.106 4.106 8 C -0.172 4.172 9 C -0.176 4.176 10 S 2.799 3.201 11 O -0.984 6.984 12 O -0.972 6.972 13 C -0.715 4.715 14 C -0.160 4.160 15 C -0.122 4.122 16 C -0.208 4.208 17 C 0.050 3.950 18 C -0.587 4.587 19 H 0.094 0.906 20 C -0.210 4.210 21 N -0.440 5.440 22 Si 0.933 3.067 23 H -0.196 1.196 24 H -0.183 1.183 25 H -0.185 1.185 26 C -0.164 4.164 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.944 15.705 5.608 16.789 hybrid contribution 0.344 0.225 0.394 0.570 sum -1.600 15.930 6.002 17.098 Atomic orbital electron populations 1.21721 0.76775 1.04023 1.03421 1.57195 1.15967 1.20393 1.89384 1.21185 0.97550 0.84076 0.95092 1.22949 0.97207 1.01419 0.98115 0.88604 1.23377 0.94729 1.02478 1.01451 1.21690 1.01747 0.88293 0.98829 1.21377 1.01301 0.99168 0.95387 1.21428 1.01537 0.99863 0.94723 1.01261 0.72422 0.72613 0.73795 1.93493 1.66828 1.60209 1.77843 1.93467 1.41218 1.84920 1.77631 1.30386 1.03991 1.12330 1.24810 1.20318 0.96513 1.03993 0.95143 1.21038 0.98483 0.97667 0.94966 1.21418 0.97765 1.02665 0.98909 1.18038 0.93101 0.92271 0.91568 1.20789 0.97022 1.24589 1.16251 0.90562 1.28461 0.99747 0.91752 1.01085 1.70596 1.06165 1.33507 1.33759 0.83015 0.72905 0.77876 0.72891 1.19564 1.18261 1.18537 1.20777 0.99065 1.02384 0.94206 0.90471 0.88269 0.92389 0.86422 0.89370 0.88632 0.89858 0.91620 0.90738 0.93600 0.92341 0.90960 0.90809 0.85224 0.85449 0.88464 0.90605 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 10.31 127.77 1.32 3.27 16 2 N -0.99 -27.55 3.18 -539.13 -1.72 -29.27 16 3 C 0.15 3.28 5.02 86.38 0.43 3.71 16 4 C -0.18 -4.12 5.73 -10.79 -0.06 -4.18 16 5 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 6 C -0.18 -4.42 8.95 30.60 0.27 -4.15 16 7 C -0.10 -1.97 2.70 -52.18 -0.14 -2.11 16 8 C -0.12 -1.95 9.85 71.98 0.71 -1.24 16 9 C -0.12 -1.69 8.86 71.98 0.64 -1.06 16 10 S 2.71 101.82 5.65 -56.49 -0.32 101.50 16 11 O -0.99 -42.58 16.34 -128.00 -2.09 -44.67 16 12 O -0.98 -38.75 15.82 -128.00 -2.02 -40.77 16 13 C -0.63 -27.28 5.96 22.22 0.13 -27.14 16 14 C -0.14 -5.81 9.34 22.46 0.21 -5.60 16 15 C -0.10 -4.47 10.02 22.22 0.22 -4.25 16 16 C -0.19 -9.43 7.96 22.73 0.18 -9.25 16 17 C 0.05 2.85 5.27 -21.29 -0.11 2.73 16 18 C -0.56 -29.88 8.98 23.46 0.21 -29.67 16 19 H 0.08 3.96 7.96 -2.92 -0.02 3.94 16 20 C 0.01 0.28 4.94 85.26 0.42 0.70 16 21 N -0.82 -43.92 12.35 21.83 0.27 -43.65 16 22 Si 1.12 42.47 30.00 68.60 2.06 44.53 16 23 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 25 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 26 C -0.14 -7.06 9.26 22.73 0.21 -6.85 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 1.72 8.07 -2.39 -0.02 1.70 16 29 H 0.06 1.53 7.79 -2.39 -0.02 1.51 16 30 H 0.12 1.87 7.73 -2.39 -0.02 1.85 16 31 H 0.09 2.11 6.65 -2.39 -0.02 2.09 16 32 H 0.10 2.30 7.94 -2.38 -0.02 2.28 16 33 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.02 7.92 -2.39 -0.02 1.01 16 36 H 0.04 0.88 7.90 -2.38 -0.02 0.86 16 37 H 0.06 0.87 7.90 -2.39 -0.02 0.85 16 38 H 0.07 0.87 7.92 -2.39 -0.02 0.85 16 39 H 0.07 0.86 7.83 -2.38 -0.02 0.85 16 40 H 0.13 4.80 7.27 -2.91 -0.02 4.78 16 41 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 42 H 0.10 5.05 6.58 -2.91 -0.02 5.03 16 43 H 0.28 15.80 6.73 -92.71 -0.62 15.18 16 44 H 0.11 5.19 7.61 -2.91 -0.02 5.17 16 Total: -1.00 -65.95 372.15 1.94 -64.01 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 1.13 Total: 33.40 kcal Atomic # 6 Polarization: -89.72 SS G_CDS: 4.64 Total: -85.07 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.45 Total: -72.92 kcal Atomic # 8 Polarization: -81.33 SS G_CDS: -4.12 Total: -85.45 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.06 Total: 44.53 kcal Atomic # 16 Polarization: 101.82 SS G_CDS: -0.32 Total: 101.50 kcal Total: -65.95 1.94 -64.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595424286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.483 kcal (2) G-P(sol) polarization free energy of solvation -65.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds