Wall clock time and date at job start Tue Mar 31 2020 13:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48501 * 109.47332 * 270.00074 * 3 2 1 5 5 H 1.48503 * 109.47278 * 29.99635 * 3 2 1 6 6 H 1.48501 * 109.47490 * 150.00157 * 3 2 1 7 7 C 1.37877 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99758 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00467 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.50457 * 60.07710 * 9 7 2 11 11 C 1.53127 * 109.50110 * 300.00260 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.36245 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.46901 * 111.00144 * 185.83239 * 14 13 12 16 16 C 1.53002 * 109.47055 * 66.04768 * 15 14 13 17 17 S 1.81399 * 109.47325 * 180.02562 * 16 15 14 18 18 O 1.42102 * 110.54213 * 291.62437 * 17 16 15 19 19 O 1.42096 * 110.54081 * 68.37509 * 17 16 15 20 20 C 1.76194 * 104.44644 * 180.02562 * 17 16 15 21 21 C 1.38240 * 120.00141 * 269.72107 * 20 17 16 22 22 C 1.38235 * 120.00142 * 179.79181 * 21 20 17 23 23 C 1.38239 * 119.99902 * 0.44603 * 22 21 20 24 24 C 1.38238 * 120.00003 * 359.80744 * 23 22 21 25 25 C 1.38235 * 120.00026 * 90.00402 * 20 17 16 26 26 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 27 27 H 0.97004 * 119.99551 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.52581 * 62.45879 * 11 9 7 29 29 H 1.08998 * 109.57452 * 302.29661 * 11 9 7 30 30 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 31 31 H 1.09002 * 109.53469 * 177.60908 * 12 11 9 32 32 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 33 33 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 34 34 H 1.08999 * 109.47329 * 186.04739 * 15 14 13 35 35 H 1.08996 * 109.46902 * 306.05049 * 15 14 13 36 36 H 1.08999 * 109.47028 * 300.00156 * 16 15 14 37 37 H 1.09006 * 109.47128 * 59.99807 * 16 15 14 38 38 H 1.07998 * 119.99749 * 0.02562 * 21 20 17 39 39 H 1.07994 * 119.99976 * 180.27872 * 22 21 20 40 40 H 1.08000 * 120.00025 * 179.83563 * 23 22 21 41 41 H 1.07999 * 119.99708 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.00411 * 359.97317 * 25 20 17 43 43 H 1.08995 * 109.46742 * 178.23410 * 26 14 13 44 44 H 1.09004 * 109.45381 * 58.25744 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 1 3.8750 -0.6814 0.8916 11 6 4.0231 -0.4727 -1.2489 12 6 5.5531 -0.5288 -1.2705 13 6 6.0057 -1.9904 -1.2377 14 7 5.4913 -2.6360 -0.0231 15 6 6.0197 -4.0000 0.1122 16 6 7.5309 -3.9409 0.3435 17 16 8.1836 -5.6252 0.5099 18 8 7.7227 -6.2219 1.7144 19 8 8.1004 -6.3167 -0.7287 20 6 9.9121 -5.4033 0.7693 21 6 10.7742 -5.3677 -0.3108 22 6 12.1298 -5.1892 -0.1075 23 6 12.6245 -5.0556 1.1764 24 6 11.7631 -5.0964 2.2568 25 6 10.4069 -5.2706 2.0532 26 6 4.0232 -2.6364 -0.0028 27 1 -0.4850 0.8401 0.0004 28 1 3.6971 0.5672 -1.2285 29 1 3.6281 -0.9609 -2.1397 30 1 5.9489 -0.0057 -0.4000 31 1 5.9224 -0.0539 -2.1795 32 1 5.6211 -2.5095 -2.1156 33 1 7.0948 -2.0335 -1.2384 34 1 5.5415 -4.4926 0.9588 35 1 5.8133 -4.5615 -0.7989 36 1 8.0091 -3.4483 -0.5031 37 1 7.7373 -3.3792 1.2547 38 1 10.3881 -5.4755 -1.3136 39 1 12.8028 -5.1569 -0.9516 40 1 13.6840 -4.9188 1.3354 41 1 12.1496 -4.9916 3.2598 42 1 9.7340 -5.3025 2.8973 43 1 3.6724 -3.1487 0.8930 44 1 3.6480 -3.1524 -0.8867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595609475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:38 Heat of formation + Delta-G solvation = -37.330218 kcal Electronic energy + Delta-G solvation = -25005.588276 eV Core-core repulsion = 21436.202043 eV Total energy + Delta-G solvation = -3569.386233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.48169 -38.70353 -37.28004 -36.11782 -34.64432 -32.39091 -31.73814 -31.44173 -30.53720 -30.03823 -25.05011 -24.56260 -23.52069 -23.15127 -22.05416 -20.93099 -19.25504 -18.96382 -18.28357 -16.91570 -16.57601 -16.35070 -16.21460 -15.53785 -15.34464 -14.93945 -14.73915 -14.19357 -14.13732 -13.94631 -13.66781 -13.42738 -13.24112 -13.06463 -12.62100 -12.58430 -12.26427 -12.21029 -12.17154 -12.05799 -11.67855 -11.31938 -11.21036 -11.11230 -11.07174 -10.87568 -10.47564 -10.11907 -9.99009 -9.79129 -9.74114 -9.46894 -9.15324 -8.96553 -8.53236 -8.00669 -6.08100 -4.07537 -0.19595 0.44076 0.86925 2.65283 3.05269 3.26765 3.38254 3.41045 3.63657 3.89981 4.23961 4.35090 4.40924 4.45630 4.47163 4.55392 4.64419 4.88867 5.03909 5.22305 5.23956 5.24963 5.34876 5.39585 5.49085 5.51641 5.66054 5.68174 5.73331 5.79212 5.91793 5.93146 6.07625 6.21183 6.23853 6.39779 6.40236 6.55043 6.72930 6.78386 7.14277 7.29691 7.42450 7.60169 7.81442 8.50322 8.95124 9.54334 11.05116 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.002736 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.073465 B =10230.947184 C =10612.884950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.037 0.963 11 C -0.124 4.124 12 C -0.120 4.120 13 C 0.056 3.944 14 N -0.532 5.532 15 C 0.062 3.938 16 C -0.598 4.598 17 S 2.495 3.505 18 O -0.935 6.935 19 O -0.938 6.938 20 C -0.657 4.657 21 C -0.025 4.025 22 C -0.142 4.142 23 C -0.068 4.068 24 C -0.141 4.141 25 C -0.023 4.023 26 C 0.072 3.928 27 H 0.264 0.736 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.072 0.928 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.084 -8.512 0.608 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.554 4.554 8 H 0.091 0.909 9 C 0.001 3.999 10 H 0.055 0.945 11 C -0.162 4.162 12 C -0.157 4.157 13 C -0.072 4.072 14 N -0.257 5.257 15 C -0.068 4.068 16 C -0.729 4.729 17 S 2.675 3.325 18 O -0.932 6.932 19 O -0.935 6.935 20 C -0.744 4.744 21 C -0.044 4.044 22 C -0.161 4.161 23 C -0.086 4.086 24 C -0.160 4.160 25 C -0.042 4.042 26 C -0.054 4.054 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.090 0.910 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 25.658 -8.931 0.978 27.185 hybrid contribution 0.805 1.269 -0.718 1.665 sum 26.463 -7.662 0.259 27.551 Atomic orbital electron populations 1.69898 1.06309 1.26956 1.50767 1.24983 0.94670 0.99047 0.94406 0.86822 0.79987 0.83480 0.77812 1.20747 1.22622 1.18847 1.20986 0.88679 0.94562 1.51124 0.90858 1.19163 0.96054 0.90866 0.93773 0.94538 1.22051 0.92538 1.00382 1.01212 1.21655 0.98228 0.94919 1.00934 1.22114 0.98655 0.95830 0.90637 1.62030 1.10768 1.14764 1.38163 1.21735 0.89748 0.93226 1.02042 1.30397 1.07250 1.22418 1.12791 1.05492 0.74344 0.77790 0.74842 1.93579 1.79595 1.73595 1.46401 1.93570 1.85612 1.69759 1.44547 1.30664 1.25452 1.18091 1.00145 1.21018 0.93577 0.91619 0.98158 1.21328 0.95567 1.01589 0.97601 1.21521 1.00129 0.94113 0.92857 1.21343 0.93514 1.01558 0.99607 1.21041 0.96518 0.91293 0.95341 1.22186 0.82792 1.00130 1.00308 0.92659 0.93429 0.92419 0.91759 0.92648 0.94858 0.91714 0.89071 0.93390 0.84701 0.83638 0.84032 0.84990 0.85243 0.84932 0.83879 0.90985 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 3 Si 0.89 21.83 24.35 -169.99 -4.14 17.70 16 4 H -0.28 -6.71 6.89 56.52 0.39 -6.32 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 7 C -0.52 -14.21 9.15 -34.44 -0.32 -14.52 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 10 H 0.04 0.88 7.21 -51.93 -0.37 0.51 16 11 C -0.12 -2.61 4.73 -26.61 -0.13 -2.74 16 12 C -0.12 -2.00 6.09 -26.65 -0.16 -2.17 16 13 C 0.06 0.83 5.29 -3.83 -0.02 0.81 16 14 N -0.53 -8.64 4.65 -234.68 -1.09 -9.73 16 15 C 0.06 0.82 4.97 -3.82 -0.02 0.80 16 16 C -0.60 -5.82 5.91 37.16 0.22 -5.60 16 17 S 2.50 26.56 5.16 -107.50 -0.55 26.00 16 18 O -0.93 -12.54 17.12 -57.54 -0.99 -13.53 16 19 O -0.94 -12.44 17.12 -57.54 -0.99 -13.43 16 20 C -0.66 -6.18 5.66 -39.58 -0.22 -6.41 16 21 C -0.02 -0.21 9.47 -39.58 -0.37 -0.59 16 22 C -0.14 -1.00 10.05 -39.58 -0.40 -1.39 16 23 C -0.07 -0.44 10.05 -39.58 -0.40 -0.84 16 24 C -0.14 -1.01 10.05 -39.58 -0.40 -1.40 16 25 C -0.02 -0.20 9.47 -39.58 -0.37 -0.58 16 26 C 0.07 1.42 4.68 -3.84 -0.02 1.40 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.78 6.22 -51.93 -0.32 0.46 16 34 H 0.09 1.15 7.98 -51.93 -0.41 0.73 16 35 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.13 1.07 6.44 -51.92 -0.33 0.74 16 37 H 0.15 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.14 1.04 7.57 -52.49 -0.40 0.64 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.14 1.08 7.57 -52.49 -0.40 0.68 16 43 H 0.07 1.39 8.01 -51.93 -0.42 0.98 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -35.14 357.55 -11.12 -46.26 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.66 Total: -1.02 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -2.87 Total: -30.99 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.32 Total: -36.38 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.97 Total: -26.95 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.70 kcal Atomic # 16 Polarization: 26.56 SS G_CDS: -0.55 Total: 26.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.14 -11.12 -46.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.930 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds