Wall clock time and date at job start Tue Mar 31 2020 13:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48501 * 109.47332 * 270.00074 * 3 2 1 5 5 H 1.48503 * 109.47278 * 29.99635 * 3 2 1 6 6 H 1.48501 * 109.47490 * 150.00157 * 3 2 1 7 7 C 1.37877 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99758 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00467 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.50457 * 60.07710 * 9 7 2 11 11 C 1.53127 * 109.50110 * 300.00260 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.36245 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.46901 * 111.00144 * 185.83239 * 14 13 12 16 16 C 1.53002 * 109.47055 * 66.04768 * 15 14 13 17 17 S 1.81399 * 109.47325 * 180.02562 * 16 15 14 18 18 O 1.42102 * 110.54213 * 291.62437 * 17 16 15 19 19 O 1.42096 * 110.54081 * 68.37509 * 17 16 15 20 20 C 1.76194 * 104.44644 * 180.02562 * 17 16 15 21 21 C 1.38240 * 120.00141 * 269.72107 * 20 17 16 22 22 C 1.38235 * 120.00142 * 179.79181 * 21 20 17 23 23 C 1.38239 * 119.99902 * 0.44603 * 22 21 20 24 24 C 1.38238 * 120.00003 * 359.80744 * 23 22 21 25 25 C 1.38235 * 120.00026 * 90.00402 * 20 17 16 26 26 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 27 27 H 0.97004 * 119.99551 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.52581 * 62.45879 * 11 9 7 29 29 H 1.08998 * 109.57452 * 302.29661 * 11 9 7 30 30 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 31 31 H 1.09002 * 109.53469 * 177.60908 * 12 11 9 32 32 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 33 33 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 34 34 H 1.08999 * 109.47329 * 186.04739 * 15 14 13 35 35 H 1.08996 * 109.46902 * 306.05049 * 15 14 13 36 36 H 1.08999 * 109.47028 * 300.00156 * 16 15 14 37 37 H 1.09006 * 109.47128 * 59.99807 * 16 15 14 38 38 H 1.07998 * 119.99749 * 0.02562 * 21 20 17 39 39 H 1.07994 * 119.99976 * 180.27872 * 22 21 20 40 40 H 1.08000 * 120.00025 * 179.83563 * 23 22 21 41 41 H 1.07999 * 119.99708 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.00411 * 359.97317 * 25 20 17 43 43 H 1.08995 * 109.46742 * 178.23410 * 26 14 13 44 44 H 1.09004 * 109.45381 * 58.25744 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 1 3.8750 -0.6814 0.8916 11 6 4.0231 -0.4727 -1.2489 12 6 5.5531 -0.5288 -1.2705 13 6 6.0057 -1.9904 -1.2377 14 7 5.4913 -2.6360 -0.0231 15 6 6.0197 -4.0000 0.1122 16 6 7.5309 -3.9409 0.3435 17 16 8.1836 -5.6252 0.5099 18 8 7.7227 -6.2219 1.7144 19 8 8.1004 -6.3167 -0.7287 20 6 9.9121 -5.4033 0.7693 21 6 10.7742 -5.3677 -0.3108 22 6 12.1298 -5.1892 -0.1075 23 6 12.6245 -5.0556 1.1764 24 6 11.7631 -5.0964 2.2568 25 6 10.4069 -5.2706 2.0532 26 6 4.0232 -2.6364 -0.0028 27 1 -0.4850 0.8401 0.0004 28 1 3.6971 0.5672 -1.2285 29 1 3.6281 -0.9609 -2.1397 30 1 5.9489 -0.0057 -0.4000 31 1 5.9224 -0.0539 -2.1795 32 1 5.6211 -2.5095 -2.1156 33 1 7.0948 -2.0335 -1.2384 34 1 5.5415 -4.4926 0.9588 35 1 5.8133 -4.5615 -0.7989 36 1 8.0091 -3.4483 -0.5031 37 1 7.7373 -3.3792 1.2547 38 1 10.3881 -5.4755 -1.3136 39 1 12.8028 -5.1569 -0.9516 40 1 13.6840 -4.9188 1.3354 41 1 12.1496 -4.9916 3.2598 42 1 9.7340 -5.3025 2.8973 43 1 3.6724 -3.1487 0.8930 44 1 3.6480 -3.1524 -0.8867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:37 Heat of formation + Delta-G solvation = -62.932162 kcal Electronic energy + Delta-G solvation = -25006.698460 eV Core-core repulsion = 21436.202043 eV Total energy + Delta-G solvation = -3570.496417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.09132 -40.01042 -38.20740 -37.04979 -36.15709 -34.26043 -32.29966 -32.04324 -31.96666 -31.36802 -26.87278 -25.83081 -24.22047 -23.68148 -23.40438 -22.36420 -20.54061 -20.01228 -19.06858 -18.76629 -17.65250 -17.17487 -17.06010 -16.85504 -16.21684 -15.87770 -15.63710 -15.52286 -15.36114 -15.24498 -14.81732 -14.47700 -14.45557 -14.21484 -13.98481 -13.71410 -13.32510 -13.20983 -13.19727 -13.10653 -12.91637 -12.68511 -12.40386 -12.30264 -12.18261 -12.01641 -11.82658 -11.73854 -11.50589 -11.41248 -11.00762 -10.80136 -10.61220 -10.35000 -10.00979 -9.30872 -8.29797 -6.33669 -1.00219 -0.14951 0.33357 1.30673 1.37234 1.48415 1.88907 2.33510 2.45461 2.80832 3.06120 3.08419 3.12624 3.51497 3.74070 3.90383 3.99356 4.01294 4.13951 4.15865 4.23067 4.36108 4.39571 4.42339 4.46941 4.52904 4.68355 4.70795 4.73750 4.81384 4.84385 4.97650 4.99611 5.04279 5.12368 5.15187 5.24581 5.30478 5.41783 5.44249 5.62839 5.73177 5.89852 6.08473 6.14406 6.33293 6.73919 7.32037 8.87150 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.002736 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.073465 B =10230.947184 C =10612.884950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.301 1.301 6 H -0.245 1.245 7 C -0.521 4.521 8 H 0.032 0.968 9 C 0.020 3.980 10 H 0.029 0.971 11 C -0.126 4.126 12 C -0.114 4.114 13 C 0.049 3.951 14 N -0.534 5.534 15 C 0.050 3.950 16 C -0.584 4.584 17 S 2.508 3.492 18 O -0.971 6.971 19 O -0.970 6.970 20 C -0.663 4.663 21 C -0.042 4.042 22 C -0.145 4.145 23 C -0.067 4.067 24 C -0.146 4.146 25 C -0.043 4.043 26 C 0.080 3.920 27 H 0.265 0.735 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.063 0.937 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.629 -7.358 0.221 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.229 1.229 6 H -0.168 1.168 7 C -0.559 4.559 8 H 0.050 0.950 9 C 0.001 3.999 10 H 0.047 0.953 11 C -0.163 4.163 12 C -0.152 4.152 13 C -0.078 4.078 14 N -0.259 5.259 15 C -0.079 4.079 16 C -0.715 4.715 17 S 2.692 3.308 18 O -0.968 6.968 19 O -0.967 6.967 20 C -0.752 4.752 21 C -0.061 4.061 22 C -0.164 4.164 23 C -0.084 4.084 24 C -0.165 4.165 25 C -0.062 4.062 26 C -0.048 4.048 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.173 0.827 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 30.205 -7.813 0.582 31.205 hybrid contribution -0.578 0.808 -0.577 1.149 sum 29.628 -7.005 0.005 30.445 Atomic orbital electron populations 1.70056 1.08285 1.28013 1.52850 1.25879 0.95417 1.03119 0.94184 0.85760 0.79136 0.78399 0.78609 1.19293 1.22944 1.16843 1.21346 0.91564 0.92979 1.50020 0.94998 1.19071 0.92822 0.93366 0.94637 0.95310 1.21955 0.96204 0.98900 0.99274 1.21637 0.94393 0.96514 1.02650 1.22289 1.01037 0.94512 0.89959 1.61964 1.08062 1.16675 1.39171 1.21873 0.92011 0.91643 1.02405 1.30272 1.04545 1.21800 1.14903 1.04779 0.74792 0.77805 0.73396 1.93529 1.80809 1.74938 1.47532 1.93523 1.86461 1.71118 1.45591 1.30282 1.23896 1.20066 1.01001 1.21262 0.94458 0.92159 0.98230 1.21696 0.95223 1.00581 0.98907 1.21952 1.01644 0.92493 0.92335 1.21692 0.92893 1.00725 1.01184 1.21258 0.97681 0.92079 0.95175 1.21895 0.85649 0.97685 0.99548 0.92594 0.94610 0.93336 0.91404 0.89651 0.94796 0.87593 0.89301 0.92922 0.82105 0.81814 0.83426 0.82523 0.82225 0.82682 0.83666 0.91827 0.96056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 2 C 0.01 0.63 5.45 84.66 0.46 1.09 16 3 Si 0.95 45.24 24.35 68.60 1.67 46.91 16 4 H -0.27 -11.99 6.89 99.48 0.69 -11.30 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.24 -10.74 6.53 99.48 0.65 -10.09 16 7 C -0.52 -29.83 9.15 25.60 0.23 -29.60 16 8 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 9 C 0.02 0.93 1.85 -11.49 -0.02 0.91 16 10 H 0.03 1.37 7.21 -2.39 -0.02 1.35 16 11 C -0.13 -5.09 4.73 30.68 0.15 -4.95 16 12 C -0.11 -3.41 6.09 30.65 0.19 -3.22 16 13 C 0.05 1.30 5.29 86.33 0.46 1.76 16 14 N -0.53 -16.27 4.65 -896.40 -4.17 -20.44 16 15 C 0.05 1.24 4.97 86.30 0.43 1.67 16 16 C -0.58 -9.85 5.91 71.98 0.43 -9.43 16 17 S 2.51 51.30 5.16 -56.49 -0.29 51.01 16 18 O -0.97 -26.21 17.12 -127.65 -2.19 -28.40 16 19 O -0.97 -25.31 17.12 -127.65 -2.19 -27.49 16 20 C -0.66 -11.43 5.66 22.27 0.13 -11.30 16 21 C -0.04 -0.63 9.47 22.27 0.21 -0.42 16 22 C -0.15 -1.57 10.05 22.27 0.22 -1.34 16 23 C -0.07 -0.61 10.05 22.27 0.22 -0.39 16 24 C -0.15 -1.66 10.05 22.27 0.22 -1.44 16 25 C -0.04 -0.67 9.47 22.27 0.21 -0.46 16 26 C 0.08 3.15 4.68 86.33 0.40 3.55 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.04 1.52 3.34 -2.39 -0.01 1.51 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.97 6.22 -2.39 -0.01 1.96 16 34 H 0.09 2.21 7.98 -2.39 -0.02 2.20 16 35 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 36 H 0.16 1.87 6.44 -2.39 -0.02 1.86 16 37 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.15 1.89 7.57 -2.91 -0.02 1.87 16 39 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.15 2.07 7.57 -2.91 -0.02 2.05 16 43 H 0.06 2.55 8.01 -2.39 -0.02 2.53 16 44 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -79.17 357.55 -2.02 -81.19 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.90 Total: 10.62 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 3.94 Total: -53.56 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.87 Total: -80.28 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -4.37 Total: -55.89 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -0.29 Total: 51.01 kcal Total: -79.17 -2.02 -81.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.258 kcal (2) G-P(sol) polarization free energy of solvation -79.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds