Wall clock time and date at job start Tue Mar 31 2020 13:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99805 * 2 1 4 4 H 1.48499 * 109.47215 * 274.98693 * 3 2 1 5 5 H 1.48500 * 109.47409 * 34.98769 * 3 2 1 6 6 H 1.48501 * 109.47134 * 154.98909 * 3 2 1 7 7 C 1.37875 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99559 * 189.56620 * 7 2 1 9 9 C 1.50696 * 120.00254 * 9.56649 * 7 2 1 10 10 H 1.09002 * 109.53463 * 305.33371 * 9 7 2 11 11 C 1.53118 * 109.50319 * 65.43825 * 9 7 2 12 12 C 1.53124 * 109.15907 * 177.59575 * 11 9 7 13 13 C 1.53038 * 109.27827 * 302.34268 * 12 11 9 14 14 N 1.46846 * 109.52252 * 59.18041 * 13 12 11 15 15 C 1.46899 * 110.99858 * 174.15997 * 14 13 12 16 16 C 1.53000 * 109.47105 * 293.95775 * 15 14 13 17 17 S 1.81398 * 109.46932 * 180.02562 * 16 15 14 18 18 O 1.42102 * 110.54510 * 291.62010 * 17 16 15 19 19 O 1.42097 * 110.54580 * 68.37216 * 17 16 15 20 20 C 1.76198 * 104.45118 * 179.97438 * 17 16 15 21 21 C 1.38239 * 120.00202 * 269.72921 * 20 17 16 22 22 C 1.38227 * 120.00207 * 179.76420 * 21 20 17 23 23 C 1.38240 * 120.00025 * 0.48069 * 22 21 20 24 24 C 1.38238 * 119.99901 * 359.79013 * 23 22 21 25 25 C 1.38237 * 119.99933 * 89.99416 * 20 17 16 26 26 C 1.46850 * 111.19809 * 298.25784 * 14 13 12 27 27 H 0.97002 * 120.00009 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.52276 * 57.68972 * 11 9 7 29 29 H 1.08997 * 109.52283 * 297.49547 * 11 9 7 30 30 H 1.09002 * 109.50386 * 62.28715 * 12 11 9 31 31 H 1.09001 * 109.49897 * 182.36059 * 12 11 9 32 32 H 1.09001 * 109.46038 * 179.19660 * 13 12 11 33 33 H 1.09005 * 109.45792 * 299.17562 * 13 12 11 34 34 H 1.09000 * 109.46850 * 53.95534 * 15 14 13 35 35 H 1.08998 * 109.47044 * 173.95246 * 15 14 13 36 36 H 1.09000 * 109.47070 * 299.99624 * 16 15 14 37 37 H 1.08998 * 109.47602 * 59.99813 * 16 15 14 38 38 H 1.08004 * 119.99674 * 359.97438 * 21 20 17 39 39 H 1.07998 * 120.00245 * 180.25121 * 22 21 20 40 40 H 1.08005 * 120.00042 * 179.77167 * 23 22 21 41 41 H 1.07994 * 120.00032 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.00205 * 0.02562 * 25 20 17 43 43 H 1.08996 * 109.46046 * 181.75842 * 26 14 13 44 44 H 1.09001 * 109.46108 * 301.73414 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2005 0.1560 9 6 1.2667 -2.4902 -0.2158 10 1 0.4567 -2.5738 0.5088 11 6 0.6894 -2.5193 -1.6337 12 6 -0.0066 -3.8634 -1.8654 13 6 0.9967 -4.9971 -1.6413 14 7 1.5194 -4.9261 -0.2709 15 6 2.3801 -6.0793 0.0247 16 6 1.5392 -7.3574 0.0215 17 16 2.6019 -8.7813 0.3872 18 8 3.5045 -9.0181 -0.6845 19 8 3.0585 -8.7305 1.7318 20 6 1.5113 -10.1647 0.3513 21 6 0.8723 -10.5714 1.5077 22 6 0.0130 -11.6537 1.4785 23 6 -0.1998 -12.3356 0.2950 24 6 0.4435 -11.9324 -0.8603 25 6 1.2989 -10.8468 -0.8322 26 6 2.2330 -3.6637 -0.0395 27 1 -0.4850 0.8401 -0.0004 28 1 1.4950 -2.3966 -2.3575 29 1 -0.0322 -1.7107 -1.7498 30 1 -0.8367 -3.9686 -1.1668 31 1 -0.3833 -3.9066 -2.8873 32 1 0.5006 -5.9560 -1.7916 33 1 1.8196 -4.8990 -2.3493 34 1 3.1591 -6.1550 -0.7340 35 1 2.8389 -5.9485 1.0047 36 1 0.7602 -7.2817 0.7802 37 1 1.0804 -7.4882 -0.9585 38 1 1.0420 -10.0413 2.4333 39 1 -0.4893 -11.9689 2.3811 40 1 -0.8684 -13.1835 0.2730 41 1 0.2776 -12.4653 -1.7848 42 1 1.8017 -10.5320 -1.7346 43 1 2.6350 -3.6542 0.9736 44 1 3.0500 -3.5719 -0.7552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:40 Heat of formation + Delta-G solvation = -69.061680 kcal Electronic energy + Delta-G solvation = -24898.682140 eV Core-core repulsion = 21327.919927 eV Total energy + Delta-G solvation = -3570.762213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.00791 -39.94019 -38.20069 -37.04532 -36.04157 -34.07912 -32.29262 -31.96381 -31.84831 -31.01001 -26.91050 -25.60597 -24.17166 -23.67843 -23.42801 -22.42145 -20.41948 -20.00777 -19.02179 -18.40590 -17.55270 -17.16865 -16.89253 -16.73934 -16.18948 -16.05716 -15.61523 -15.49089 -15.22894 -15.00174 -14.50188 -14.45292 -14.25947 -14.17627 -13.96927 -13.38395 -13.29192 -13.20283 -13.18662 -13.10251 -12.82892 -12.69269 -12.56297 -12.24346 -12.17929 -12.06028 -11.82036 -11.71586 -11.52569 -11.37564 -10.82321 -10.67662 -10.40937 -10.34524 -10.00630 -9.24010 -8.12705 -6.20932 -0.99623 -0.14447 0.33763 1.40386 1.41992 1.51835 1.89550 2.41913 2.46830 2.83678 3.12752 3.13827 3.17894 3.53228 3.74918 3.91487 3.99650 4.14095 4.15487 4.25837 4.30093 4.41568 4.42691 4.45941 4.54559 4.60615 4.74030 4.74553 4.83254 4.88643 4.96652 4.99926 5.08815 5.12724 5.15274 5.30740 5.39836 5.41980 5.44707 5.64419 5.90248 5.91793 6.05178 6.12403 6.23042 6.43983 6.91819 7.45625 8.96076 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.002558 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.664995 B =10943.208397 C =11252.155734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.051 3.949 10 H 0.004 0.996 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.054 3.946 14 N -0.537 5.537 15 C 0.051 3.949 16 C -0.586 4.586 17 S 2.511 3.489 18 O -0.968 6.968 19 O -0.970 6.970 20 C -0.664 4.664 21 C -0.043 4.043 22 C -0.146 4.146 23 C -0.066 4.066 24 C -0.145 4.145 25 C -0.042 4.042 26 C 0.074 3.926 27 H 0.261 0.739 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.060 0.940 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 -25.858 -2.227 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.032 3.968 10 H 0.023 0.977 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.073 4.073 14 N -0.262 5.262 15 C -0.078 4.078 16 C -0.717 4.717 17 S 2.696 3.304 18 O -0.966 6.966 19 O -0.967 6.967 20 C -0.753 4.753 21 C -0.062 4.062 22 C -0.165 4.165 23 C -0.084 4.084 24 C -0.164 4.164 25 C -0.061 4.061 26 C -0.054 4.054 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.178 0.822 37 H 0.176 0.824 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.166 0.834 43 H 0.078 0.922 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.020 -25.788 -1.731 25.925 hybrid contribution 0.233 1.316 -0.500 1.427 sum -1.787 -24.472 -2.231 24.638 Atomic orbital electron populations 1.70096 1.07241 1.27197 1.50940 1.25676 0.95527 1.02230 0.94750 0.85682 0.78949 0.79795 0.78081 1.20180 1.20991 1.19292 1.21503 0.94135 0.92556 1.49401 0.93066 1.18594 0.93697 0.91082 0.93381 0.97746 1.21447 0.98369 0.96193 0.97981 1.21582 0.97963 0.94373 1.00923 1.22231 0.97492 0.99801 0.87787 1.61953 1.36854 1.01301 1.26087 1.21870 0.93920 0.89262 1.02772 1.30285 1.14966 1.11396 1.15042 1.04688 0.75812 0.76376 0.73554 1.93521 1.61104 1.84960 1.56981 1.93524 1.79456 1.87054 1.36688 1.30289 1.21544 1.22136 1.01324 1.21258 0.92183 0.96116 0.96671 1.21689 0.98846 0.95866 1.00097 1.21954 0.96119 0.98233 0.92102 1.21699 0.97135 0.97204 1.00373 1.21265 0.94372 0.94140 0.96330 1.22094 0.95214 0.88720 0.99350 0.93048 0.95114 0.94200 0.92779 0.90714 0.88183 0.94920 0.92891 0.89334 0.82166 0.82355 0.83699 0.82668 0.82181 0.82489 0.83414 0.92162 0.96006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 12.18 21.45 0.26 -53.31 16 2 C 0.02 0.97 5.22 84.65 0.44 1.41 16 3 Si 0.95 43.89 29.55 68.60 2.03 45.92 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.82 8.48 25.60 0.22 -29.60 16 8 H 0.05 2.80 7.77 -2.91 -0.02 2.77 16 9 C 0.05 2.59 2.13 -11.49 -0.02 2.56 16 10 H 0.00 0.25 8.09 -2.39 -0.02 0.23 16 11 C -0.10 -4.70 5.09 30.68 0.16 -4.54 16 12 C -0.11 -3.96 6.09 30.65 0.19 -3.77 16 13 C 0.05 1.65 5.29 86.33 0.46 2.11 16 14 N -0.54 -18.20 4.65 -896.35 -4.17 -22.37 16 15 C 0.05 1.37 4.97 86.30 0.43 1.80 16 16 C -0.59 -11.25 5.91 71.98 0.43 -10.83 16 17 S 2.51 54.39 5.16 -56.49 -0.29 54.09 16 18 O -0.97 -26.09 17.13 -127.65 -2.19 -28.28 16 19 O -0.97 -27.10 17.12 -127.65 -2.18 -29.28 16 20 C -0.66 -12.25 5.66 22.27 0.13 -12.12 16 21 C -0.04 -0.73 9.47 22.27 0.21 -0.52 16 22 C -0.15 -1.82 10.05 22.27 0.22 -1.60 16 23 C -0.07 -0.68 10.05 22.27 0.22 -0.45 16 24 C -0.15 -1.72 10.05 22.27 0.22 -1.49 16 25 C -0.04 -0.67 9.47 22.27 0.21 -0.46 16 26 C 0.07 3.07 4.68 86.33 0.40 3.48 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 2.08 6.98 -2.39 -0.02 2.07 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 32 H 0.10 2.28 6.22 -2.39 -0.01 2.27 16 33 H 0.03 0.98 8.14 -2.38 -0.02 0.97 16 34 H 0.05 1.35 8.12 -2.39 -0.02 1.33 16 35 H 0.09 2.36 7.98 -2.39 -0.02 2.34 16 36 H 0.16 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.16 2.28 6.44 -2.39 -0.02 2.27 16 38 H 0.15 2.25 7.56 -2.91 -0.02 2.23 16 39 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 40 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.15 2.05 7.57 -2.91 -0.02 2.03 16 43 H 0.06 2.51 8.01 -2.39 -0.02 2.49 16 44 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -74.44 365.80 -1.66 -76.11 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.97 Total: 11.15 kcal Atomic # 6 Polarization: -57.94 SS G_CDS: 3.91 Total: -54.02 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -3.91 Total: -75.69 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -4.37 Total: -57.56 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 54.39 SS G_CDS: -0.29 Total: 54.09 kcal Total: -74.44 -1.66 -76.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.044 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds