Wall clock time and date at job start Tue Mar 31 2020 14:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34896 * 117.00567 * 2 1 4 4 O 1.21633 * 119.99325 * 0.02562 * 3 2 1 5 5 C 1.46389 * 120.00205 * 179.72944 * 3 2 1 6 6 C 1.36758 * 125.46097 * 179.97438 * 5 3 2 7 7 C 1.37407 * 113.28666 * 179.83394 * 6 5 3 8 8 C 1.50704 * 122.44685 * 180.19458 * 7 6 5 9 9 N 1.46896 * 109.47261 * 267.39830 * 8 7 6 10 10 C 1.46849 * 111.00050 * 63.71303 * 9 8 7 11 11 C 1.53040 * 109.52303 * 174.15948 * 10 9 8 12 12 C 1.53117 * 109.27928 * 59.17646 * 11 10 9 13 13 C 1.53117 * 109.16171 * 302.34636 * 12 11 10 14 14 H 1.08999 * 109.50429 * 297.71348 * 13 12 11 15 15 C 1.50703 * 109.50547 * 177.63521 * 13 12 11 16 16 H 1.08007 * 119.99806 * 240.00039 * 15 13 12 17 17 C 1.37870 * 119.99926 * 59.99715 * 15 13 12 18 18 N 1.31514 * 120.00285 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00040 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46840 * 60.00063 * 19 17 15 21 21 H 1.48500 * 109.47210 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47018 * 300.00320 * 19 17 15 23 23 C 1.46843 * 111.00044 * 299.49719 * 9 8 7 24 24 C 1.33857 * 115.11111 * 0.45386 * 7 6 5 25 25 C 1.50702 * 124.51885 * 179.78180 * 24 7 6 26 26 S 1.70616 * 110.96439 * 359.74769 * 24 7 6 27 27 H 1.09005 * 109.46741 * 299.99878 * 1 2 3 28 28 H 1.08997 * 109.47049 * 59.99724 * 1 2 3 29 29 H 1.08997 * 109.47565 * 180.02562 * 1 2 3 30 30 H 1.08001 * 123.35145 * 0.02562 * 6 5 3 31 31 H 1.09008 * 109.46382 * 27.39904 * 8 7 6 32 32 H 1.08998 * 109.47303 * 147.39205 * 8 7 6 33 33 H 1.09004 * 109.46024 * 294.17131 * 10 9 8 34 34 H 1.08999 * 109.46687 * 54.14002 * 10 9 8 35 35 H 1.08998 * 109.49895 * 179.11523 * 11 10 9 36 36 H 1.08995 * 109.49915 * 299.23200 * 11 10 9 37 37 H 1.09003 * 109.52515 * 62.25095 * 12 11 10 38 38 H 1.08999 * 109.52451 * 182.37652 * 12 11 10 39 39 H 0.96994 * 120.00476 * 179.97438 * 18 17 15 40 40 H 1.08990 * 109.46400 * 305.85558 * 23 9 8 41 41 H 1.09001 * 109.45882 * 65.83018 * 23 9 8 42 42 H 1.09004 * 109.47173 * 174.24100 * 25 24 7 43 43 H 1.08995 * 109.47125 * 294.24124 * 25 24 7 44 44 H 1.08999 * 109.46852 * 54.24697 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5264 1.2784 0.0060 6 6 4.2605 2.4323 0.0061 7 6 5.6169 2.2131 0.0161 8 6 6.6179 3.3396 0.0224 9 7 7.0002 3.6628 -1.3586 10 6 5.8478 4.1601 -2.1210 11 6 6.3107 4.6221 -3.5046 12 6 6.9630 3.4469 -4.2380 13 6 8.1299 2.9169 -3.4002 14 1 8.8823 3.6977 -3.2891 15 6 8.7413 1.7231 -4.0873 16 1 8.7631 0.7654 -3.5883 17 6 9.2727 1.8534 -5.3528 18 7 9.2465 3.0196 -5.9601 19 14 10.0299 0.3734 -6.2048 20 1 9.0042 -0.6901 -6.3541 21 1 10.5254 0.7743 -7.5460 22 1 11.1612 -0.1406 -5.3918 23 6 7.6143 2.5042 -2.0196 24 6 5.9844 0.9260 0.0143 25 6 7.4129 0.4457 0.0191 26 16 4.6201 -0.0984 0.0067 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.8181 3.4175 0.0021 31 1 6.1737 4.2177 0.4915 32 1 7.5024 3.0367 0.5828 33 1 5.1137 3.3618 -2.2315 34 1 5.3957 4.9981 -1.5907 35 1 5.4527 4.9765 -4.0758 36 1 7.0345 5.4297 -3.3951 37 1 6.2286 2.6545 -4.3820 38 1 7.3321 3.7820 -5.2073 39 1 9.6206 3.1113 -6.8503 40 1 8.4451 2.1398 -1.4156 41 1 6.8719 1.7139 -2.1306 42 1 7.4310 -0.6396 0.1195 43 1 7.8957 0.7323 -0.9151 44 1 7.9450 0.8969 0.8566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:40 Heat of formation + Delta-G solvation = -52.534928 kcal Electronic energy + Delta-G solvation = -25821.784310 eV Core-core repulsion = 22251.738751 eV Total energy + Delta-G solvation = -3570.045559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46781 -39.59959 -37.15383 -36.40643 -33.62594 -32.58212 -31.40006 -29.92327 -28.80632 -27.46042 -25.45695 -24.93109 -23.80895 -22.38940 -21.47299 -20.66065 -19.00724 -18.43674 -18.11912 -16.83929 -16.55204 -16.45748 -16.16723 -15.18539 -14.77268 -14.61161 -14.21949 -14.01965 -13.69380 -13.56468 -13.20681 -12.93477 -12.80192 -12.56027 -12.37576 -12.31282 -12.14361 -11.90128 -11.77964 -11.44594 -11.18967 -11.01877 -10.94759 -10.90018 -10.72673 -10.63755 -10.54846 -10.09502 -9.82019 -9.48325 -9.07460 -8.72788 -8.62380 -8.46268 -8.29770 -7.69012 -5.97595 -4.04316 0.34995 1.42237 1.86896 2.14192 2.50236 2.87162 3.31016 3.36399 3.37965 4.40117 4.62692 4.70036 4.83485 4.87359 4.95207 5.07213 5.16334 5.27535 5.32442 5.45803 5.54890 5.62297 5.71848 5.79332 5.85595 5.96141 6.06728 6.11791 6.13061 6.25576 6.31169 6.40189 6.43811 6.51148 6.74157 6.77353 6.95704 7.22884 7.40162 7.54871 7.65076 7.73376 7.79752 8.08023 8.17487 8.46812 8.99357 9.60048 11.08223 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.003728 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.265481 B = 7509.677155 C = 7818.978361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.544 3.456 4 O -0.504 6.504 5 C -0.284 4.284 6 C -0.015 4.015 7 C -0.166 4.166 8 C 0.113 3.887 9 N -0.525 5.525 10 C 0.060 3.940 11 C -0.118 4.118 12 C -0.110 4.110 13 C 0.054 3.946 14 H 0.033 0.967 15 C -0.515 4.515 16 H 0.052 0.948 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.060 3.940 24 C -0.160 4.160 25 C -0.113 4.113 26 S 0.232 5.768 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.260 0.740 40 H 0.064 0.936 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.113 0.887 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.442 -4.857 13.859 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.389 3.611 4 O -0.394 6.394 5 C -0.402 4.402 6 C -0.049 4.049 7 C -0.179 4.179 8 C -0.018 4.018 9 N -0.247 5.247 10 C -0.067 4.067 11 C -0.156 4.156 12 C -0.148 4.148 13 C 0.035 3.965 14 H 0.052 0.948 15 C -0.554 4.554 16 H 0.070 0.930 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.067 4.067 24 C -0.281 4.281 25 C -0.171 4.171 26 S 0.502 5.498 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.464 -5.703 13.682 18.739 hybrid contribution -0.365 0.137 -0.627 0.738 sum -11.829 -5.566 13.055 18.475 Atomic orbital electron populations 1.23276 0.75739 1.03771 1.02709 1.86585 1.23751 1.32383 1.84769 1.19658 0.87167 0.81609 0.72659 1.90880 1.66026 1.35846 1.46652 1.23255 0.93562 0.98915 1.24477 1.20632 0.92125 0.98199 0.93980 1.19515 0.95104 0.96151 1.07116 1.21023 0.95026 0.93171 0.92566 1.62407 1.27584 1.34023 1.00639 1.22056 0.91481 0.97909 0.95303 1.21680 0.99440 1.00340 0.94126 1.21641 0.97003 0.94325 1.01840 1.18684 0.93458 0.96290 0.88050 0.94845 1.21079 1.38096 0.95446 1.00799 0.92991 1.24918 0.95862 0.95594 0.97333 1.69875 1.45588 1.22877 1.14237 0.86725 0.79631 0.83220 0.78803 1.20399 1.21325 1.20281 1.22652 0.96508 0.89761 0.97732 1.24360 1.01962 0.97469 1.04294 1.21060 0.89164 1.01124 1.05755 1.83070 0.92661 1.06825 1.67254 0.91808 0.91696 0.87912 0.83188 0.90439 0.89973 0.95486 0.92467 0.93621 0.92093 0.95339 0.89163 0.92995 0.91743 0.95479 0.91516 0.86905 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.42 10.42 -41.03 -0.43 -4.85 16 3 C 0.54 7.88 7.92 34.01 0.27 8.14 16 4 O -0.50 -8.25 16.64 -19.37 -0.32 -8.57 16 5 C -0.28 -4.03 6.45 -36.84 -0.24 -4.27 16 6 C -0.01 -0.21 8.51 -40.42 -0.34 -0.55 16 7 C -0.17 -2.33 3.91 -106.46 -0.42 -2.74 16 8 C 0.11 1.59 5.41 -4.98 -0.03 1.56 16 9 N -0.52 -9.22 4.86 -236.11 -1.15 -10.37 16 10 C 0.06 1.07 4.87 -3.83 -0.02 1.05 16 11 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 12 C -0.11 -2.60 5.02 -26.61 -0.13 -2.73 16 13 C 0.05 1.31 2.26 -91.69 -0.21 1.10 16 14 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 15 C -0.52 -13.68 8.57 -34.44 -0.30 -13.98 16 16 H 0.05 1.34 7.75 -52.48 -0.41 0.93 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.03 11.35 55.43 0.63 -24.40 16 19 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 C 0.06 1.19 2.64 -3.83 -0.01 1.18 16 24 C -0.16 -2.15 5.17 -35.85 -0.19 -2.34 16 25 C -0.11 -1.39 8.87 36.01 0.32 -1.07 16 26 S 0.23 2.92 22.85 -107.50 -2.46 0.46 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.08 0.98 8.08 -51.92 -0.42 0.56 16 32 H 0.08 1.07 7.21 -51.93 -0.37 0.70 16 33 H 0.03 0.50 6.67 -51.93 -0.35 0.15 16 34 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.22 6.23 -51.93 -0.32 0.90 16 41 H 0.03 0.55 5.89 -51.93 -0.31 0.25 16 42 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 43 H 0.11 1.66 4.10 -51.93 -0.21 1.45 16 44 H 0.08 0.87 7.65 -51.93 -0.40 0.47 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -29.83 357.82 -10.29 -40.12 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.46 Total: 0.43 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.47 Total: -14.09 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.52 Total: -34.76 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.75 Total: -13.42 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.46 Total: 0.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.83 -10.29 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.416 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds