Wall clock time and date at job start Tue Mar 31 2020 14:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34896 * 117.00567 * 2 1 4 4 O 1.21633 * 119.99325 * 0.02562 * 3 2 1 5 5 C 1.46389 * 120.00205 * 179.72944 * 3 2 1 6 6 C 1.36758 * 125.46097 * 179.97438 * 5 3 2 7 7 C 1.37407 * 113.28666 * 179.83394 * 6 5 3 8 8 C 1.50704 * 122.44685 * 180.19458 * 7 6 5 9 9 N 1.46896 * 109.47261 * 267.39830 * 8 7 6 10 10 C 1.46849 * 111.00050 * 63.71303 * 9 8 7 11 11 C 1.53040 * 109.52303 * 174.15948 * 10 9 8 12 12 C 1.53117 * 109.27928 * 59.17646 * 11 10 9 13 13 C 1.53117 * 109.16171 * 302.34636 * 12 11 10 14 14 H 1.08999 * 109.50429 * 297.71348 * 13 12 11 15 15 C 1.50703 * 109.50547 * 177.63521 * 13 12 11 16 16 H 1.08007 * 119.99806 * 240.00039 * 15 13 12 17 17 C 1.37870 * 119.99926 * 59.99715 * 15 13 12 18 18 N 1.31514 * 120.00285 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00040 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46840 * 60.00063 * 19 17 15 21 21 H 1.48500 * 109.47210 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47018 * 300.00320 * 19 17 15 23 23 C 1.46843 * 111.00044 * 299.49719 * 9 8 7 24 24 C 1.33857 * 115.11111 * 0.45386 * 7 6 5 25 25 C 1.50702 * 124.51885 * 179.78180 * 24 7 6 26 26 S 1.70616 * 110.96439 * 359.74769 * 24 7 6 27 27 H 1.09005 * 109.46741 * 299.99878 * 1 2 3 28 28 H 1.08997 * 109.47049 * 59.99724 * 1 2 3 29 29 H 1.08997 * 109.47565 * 180.02562 * 1 2 3 30 30 H 1.08001 * 123.35145 * 0.02562 * 6 5 3 31 31 H 1.09008 * 109.46382 * 27.39904 * 8 7 6 32 32 H 1.08998 * 109.47303 * 147.39205 * 8 7 6 33 33 H 1.09004 * 109.46024 * 294.17131 * 10 9 8 34 34 H 1.08999 * 109.46687 * 54.14002 * 10 9 8 35 35 H 1.08998 * 109.49895 * 179.11523 * 11 10 9 36 36 H 1.08995 * 109.49915 * 299.23200 * 11 10 9 37 37 H 1.09003 * 109.52515 * 62.25095 * 12 11 10 38 38 H 1.08999 * 109.52451 * 182.37652 * 12 11 10 39 39 H 0.96994 * 120.00476 * 179.97438 * 18 17 15 40 40 H 1.08990 * 109.46400 * 305.85558 * 23 9 8 41 41 H 1.09001 * 109.45882 * 65.83018 * 23 9 8 42 42 H 1.09004 * 109.47173 * 174.24100 * 25 24 7 43 43 H 1.08995 * 109.47125 * 294.24124 * 25 24 7 44 44 H 1.08999 * 109.46852 * 54.24697 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5264 1.2784 0.0060 6 6 4.2605 2.4323 0.0061 7 6 5.6169 2.2131 0.0161 8 6 6.6179 3.3396 0.0224 9 7 7.0002 3.6628 -1.3586 10 6 5.8478 4.1601 -2.1210 11 6 6.3107 4.6221 -3.5046 12 6 6.9630 3.4469 -4.2380 13 6 8.1299 2.9169 -3.4002 14 1 8.8823 3.6977 -3.2891 15 6 8.7413 1.7231 -4.0873 16 1 8.7631 0.7654 -3.5883 17 6 9.2727 1.8534 -5.3528 18 7 9.2465 3.0196 -5.9601 19 14 10.0299 0.3734 -6.2048 20 1 9.0042 -0.6901 -6.3541 21 1 10.5254 0.7743 -7.5460 22 1 11.1612 -0.1406 -5.3918 23 6 7.6143 2.5042 -2.0196 24 6 5.9844 0.9260 0.0143 25 6 7.4129 0.4457 0.0191 26 16 4.6201 -0.0984 0.0067 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.8181 3.4175 0.0021 31 1 6.1737 4.2177 0.4915 32 1 7.5024 3.0367 0.5828 33 1 5.1137 3.3618 -2.2315 34 1 5.3957 4.9981 -1.5907 35 1 5.4527 4.9765 -4.0758 36 1 7.0345 5.4297 -3.3951 37 1 6.2286 2.6545 -4.3820 38 1 7.3321 3.7820 -5.2073 39 1 9.6206 3.1113 -6.8503 40 1 8.4451 2.1398 -1.4156 41 1 6.8719 1.7139 -2.1306 42 1 7.4310 -0.6396 0.1195 43 1 7.8957 0.7323 -0.9151 44 1 7.9450 0.8969 0.8566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:39 Heat of formation + Delta-G solvation = -69.222766 kcal Electronic energy + Delta-G solvation = -25822.507949 eV Core-core repulsion = 22251.738751 eV Total energy + Delta-G solvation = -3570.769198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51713 -40.82872 -38.50776 -37.49255 -35.37928 -33.86909 -32.92163 -31.57000 -29.85909 -28.49184 -26.86567 -26.57310 -24.86726 -23.81387 -23.09543 -21.91332 -20.46776 -19.51239 -19.36673 -18.40677 -17.83259 -17.50204 -17.25916 -16.81691 -16.29239 -15.80939 -15.76879 -15.24443 -14.85749 -14.62864 -14.47675 -14.30573 -14.22877 -13.99316 -13.88279 -13.43816 -13.15981 -13.11072 -13.00515 -12.80901 -12.75414 -12.69770 -12.36599 -12.14996 -11.97374 -11.90991 -11.82005 -11.72151 -11.64510 -11.35859 -10.84250 -10.57314 -10.34684 -9.71968 -9.52940 -9.08230 -8.04181 -6.17955 -0.70681 0.40359 0.83786 1.06827 1.43723 1.44518 1.51678 1.58774 1.79805 2.45325 3.23190 3.24966 3.73590 3.81799 4.01915 4.11701 4.23602 4.25061 4.28727 4.30968 4.38250 4.48662 4.58696 4.64531 4.67231 4.68858 4.79635 4.80558 4.91186 4.94032 5.00384 5.09012 5.13707 5.14289 5.21206 5.29491 5.36253 5.43470 5.55716 5.66671 6.00375 6.14938 6.24181 6.37173 6.49497 6.51425 6.95527 7.49953 9.00283 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.003728 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.265481 B = 7509.677155 C = 7818.978361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.544 3.456 4 O -0.531 6.531 5 C -0.305 4.305 6 C -0.020 4.020 7 C -0.174 4.174 8 C 0.115 3.885 9 N -0.533 5.533 10 C 0.068 3.932 11 C -0.113 4.113 12 C -0.103 4.103 13 C 0.051 3.949 14 H -0.003 1.003 15 C -0.531 4.531 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.949 3.051 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.268 1.268 23 C 0.080 3.920 24 C -0.168 4.168 25 C -0.112 4.112 26 S 0.269 5.731 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.152 0.848 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.020 0.980 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.014 0.986 38 H 0.055 0.945 39 H 0.258 0.742 40 H 0.073 0.927 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.018 -6.209 15.404 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.390 3.610 4 O -0.423 6.423 5 C -0.423 4.423 6 C -0.055 4.055 7 C -0.187 4.187 8 C -0.015 4.015 9 N -0.256 5.256 10 C -0.060 4.060 11 C -0.151 4.151 12 C -0.141 4.141 13 C 0.032 3.968 14 H 0.015 0.985 15 C -0.569 4.569 16 H 0.074 0.926 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.775 3.225 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.193 1.193 23 C -0.047 4.047 24 C -0.289 4.289 25 C -0.170 4.170 26 S 0.540 5.460 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.170 0.830 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.040 0.960 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.048 -7.079 15.250 20.684 hybrid contribution -0.233 0.513 -1.091 1.228 sum -12.281 -6.567 14.158 19.860 Atomic orbital electron populations 1.23630 0.73695 1.06100 1.02842 1.86574 1.25787 1.31222 1.84207 1.19769 0.87346 0.81827 0.72055 1.90857 1.66631 1.36744 1.48117 1.23437 0.93933 0.99824 1.25059 1.20709 0.92278 0.98452 0.94021 1.19469 0.94945 0.96317 1.07974 1.21089 0.95873 0.94237 0.90287 1.62336 1.27947 1.33130 1.02140 1.21987 0.91257 0.98611 0.94180 1.21598 0.99520 0.98376 0.95560 1.21451 0.96631 0.95340 1.00712 1.18626 0.92756 0.94557 0.90872 0.98514 1.21498 1.37942 0.96334 1.01158 0.92572 1.25702 0.96506 0.98102 0.98185 1.70034 1.46484 1.24776 1.14378 0.85745 0.79043 0.80050 0.77628 1.19841 1.21399 1.19254 1.22306 0.96687 0.90229 0.95460 1.24639 1.02923 0.97745 1.03615 1.21048 0.88351 1.02454 1.05139 1.82900 0.91449 1.05581 1.66108 0.91381 0.91936 0.84507 0.83002 0.88499 0.88636 0.96151 0.89654 0.92058 0.92809 0.96673 0.92617 0.93254 0.90859 0.96032 0.89821 0.89290 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.36 -8.38 10.42 -58.10 -0.61 -8.99 16 3 C 0.54 15.22 7.92 69.94 0.55 15.78 16 4 O -0.53 -17.11 16.64 19.40 0.32 -16.79 16 5 C -0.30 -8.24 6.45 24.05 0.16 -8.09 16 6 C -0.02 -0.53 8.51 21.73 0.18 -0.35 16 7 C -0.17 -4.54 3.91 -21.06 -0.08 -4.62 16 8 C 0.11 2.96 5.41 85.56 0.46 3.42 16 9 N -0.53 -18.02 4.86 -900.92 -4.38 -22.39 16 10 C 0.07 2.29 4.87 86.33 0.42 2.71 16 11 C -0.11 -4.44 6.09 30.65 0.19 -4.26 16 12 C -0.10 -5.01 5.02 30.67 0.15 -4.86 16 13 C 0.05 2.52 2.26 -11.49 -0.03 2.49 16 14 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 15 C -0.53 -28.60 8.57 25.60 0.22 -28.38 16 16 H 0.06 2.90 7.75 -2.91 -0.02 2.88 16 17 C 0.01 0.75 5.30 84.65 0.45 1.20 16 18 N -0.92 -53.29 11.35 21.44 0.24 -53.05 16 19 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.08 3.15 2.64 86.33 0.23 3.37 16 24 C -0.17 -4.17 5.17 24.69 0.13 -4.05 16 25 C -0.11 -2.49 8.87 71.24 0.63 -1.86 16 26 S 0.27 6.25 22.85 -56.49 -1.29 4.96 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.10 2.15 8.08 -2.38 -0.02 2.13 16 32 H 0.10 2.22 7.21 -2.39 -0.02 2.20 16 33 H 0.02 0.72 6.67 -2.39 -0.02 0.71 16 34 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 3.08 6.15 -2.39 -0.01 3.06 16 39 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.07 2.73 6.23 -2.39 -0.01 2.71 16 41 H 0.02 0.87 5.89 -2.39 -0.01 0.86 16 42 H 0.08 1.55 8.12 -2.38 -0.02 1.53 16 43 H 0.09 2.48 4.10 -2.39 -0.01 2.47 16 44 H 0.10 1.84 7.65 -2.39 -0.02 1.82 16 Total: -1.00 -65.53 357.82 2.19 -63.34 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.01 Total: 13.60 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 4.86 Total: -25.82 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -4.13 Total: -75.44 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.28 Total: -25.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.29 Total: 4.96 kcal Total: -65.53 2.19 -63.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.879 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds