Wall clock time and date at job start Tue Mar 31 2020 14:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34902 * 116.99782 * 2 1 4 4 O 1.21628 * 120.00201 * 0.02562 * 3 2 1 5 5 C 1.46393 * 119.99749 * 180.02562 * 3 2 1 6 6 C 1.36749 * 125.46128 * 180.02562 * 5 3 2 7 7 C 1.37415 * 113.29193 * 180.02562 * 6 5 3 8 8 C 1.50694 * 122.44714 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.47035 * 260.02210 * 8 7 6 10 10 C 1.46842 * 110.99676 * 66.04843 * 9 8 7 11 11 C 1.53036 * 109.52190 * 185.84074 * 10 9 8 12 12 C 1.53123 * 109.27788 * 300.81892 * 11 10 9 13 13 C 1.53123 * 109.16001 * 57.65365 * 12 11 10 14 14 H 1.08998 * 109.53365 * 62.30832 * 13 12 11 15 15 C 1.50697 * 109.50101 * 182.40587 * 13 12 11 16 16 H 1.07998 * 119.99675 * 119.80966 * 15 13 12 17 17 C 1.37883 * 120.00267 * 299.80295 * 15 13 12 18 18 N 1.31510 * 119.99886 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 119.99700 * 0.02562 * 17 15 13 20 20 H 1.48499 * 109.46968 * 89.99991 * 19 17 15 21 21 H 1.48499 * 109.46888 * 210.00173 * 19 17 15 22 22 H 1.48500 * 109.47081 * 329.99900 * 19 17 15 23 23 C 1.46848 * 110.99958 * 190.25905 * 9 8 7 24 24 C 1.33866 * 115.10554 * 0.24485 * 7 6 5 25 25 C 1.50700 * 124.51494 * 179.71747 * 24 7 6 26 26 S 1.70613 * 110.96230 * 359.62290 * 24 7 6 27 27 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47037 * 299.99559 * 1 2 3 29 29 H 1.09003 * 109.47644 * 59.99855 * 1 2 3 30 30 H 1.08008 * 123.35857 * 0.05310 * 6 5 3 31 31 H 1.09004 * 109.47123 * 140.02918 * 8 7 6 32 32 H 1.08994 * 109.47434 * 20.02436 * 8 7 6 33 33 H 1.09002 * 109.46766 * 65.82407 * 10 9 8 34 34 H 1.09000 * 109.46420 * 305.85141 * 10 9 8 35 35 H 1.09000 * 109.50632 * 60.76184 * 11 10 9 36 36 H 1.09006 * 109.50216 * 180.87978 * 11 10 9 37 37 H 1.09000 * 109.52561 * 177.56017 * 12 11 10 38 38 H 1.09007 * 109.52268 * 297.75177 * 12 11 10 39 39 H 0.97005 * 119.99724 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.46014 * 294.17985 * 23 9 8 41 41 H 1.08995 * 109.46374 * 54.14015 * 23 9 8 42 42 H 1.08996 * 109.47320 * 90.00443 * 25 24 7 43 43 H 1.09004 * 109.46811 * 210.00151 * 25 24 7 44 44 H 1.09000 * 109.47334 * 330.00281 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4019 2.2221 0.0005 5 6 3.5262 1.2786 -0.0006 6 6 4.2602 2.4324 -0.0001 7 6 5.6168 2.2135 -0.0014 8 6 6.6176 3.3400 -0.0018 9 7 7.1211 3.5474 -1.3662 10 6 6.0541 4.0277 -2.2534 11 6 6.5750 4.0930 -3.6909 12 6 7.7780 5.0386 -3.7502 13 6 8.8551 4.5428 -2.7814 14 1 9.1953 3.5541 -3.0895 15 6 10.0186 5.5004 -2.7898 16 1 10.3107 6.0032 -1.8797 17 6 10.7103 5.7347 -3.9593 18 7 11.7260 6.5701 -3.9665 19 14 10.2046 4.8655 -5.5336 20 1 9.2011 5.6898 -6.2537 21 1 11.3973 4.6715 -6.3968 22 1 9.6136 3.5443 -5.2016 23 6 8.2681 4.4643 -1.3703 24 6 5.9844 0.9263 -0.0080 25 6 7.4128 0.4461 -0.0168 26 16 4.6200 -0.0981 -0.0026 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 3.8178 3.4178 0.0015 31 1 7.4483 3.0883 0.6576 32 1 6.1375 4.2528 0.3509 33 1 5.7377 5.0214 -1.9363 34 1 5.2064 3.3441 -2.2051 35 1 6.8786 3.0971 -4.0137 36 1 5.7875 4.4644 -4.3468 37 1 8.1791 5.0547 -4.7636 38 1 7.4660 6.0433 -3.4649 39 1 12.2128 6.7347 -4.7892 40 1 7.9414 5.4559 -1.0572 41 1 9.0283 4.0980 -0.6805 42 1 7.7622 0.3264 1.0087 43 1 7.4711 -0.5113 -0.5345 44 1 8.0383 1.1759 -0.5309 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:42 Heat of formation + Delta-G solvation = -72.289693 kcal Electronic energy + Delta-G solvation = -25218.535513 eV Core-core repulsion = 21647.633323 eV Total energy + Delta-G solvation = -3570.902190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45209 -40.51061 -38.92280 -37.49199 -35.42701 -33.92895 -33.02232 -31.98823 -29.88043 -28.62054 -26.82467 -26.69346 -24.73066 -23.97217 -23.03521 -21.73278 -20.48309 -19.67966 -19.38936 -18.79059 -17.79704 -17.48949 -17.34172 -17.06118 -16.19212 -15.85096 -15.49331 -15.31447 -15.00895 -14.80151 -14.77857 -14.44035 -14.30801 -14.18852 -13.83616 -13.61285 -13.40982 -13.09070 -12.95615 -12.92006 -12.71665 -12.62192 -12.52593 -12.21023 -11.90491 -11.88222 -11.84778 -11.77403 -11.68570 -11.41465 -10.99036 -10.80401 -10.60311 -9.68038 -9.47920 -9.14639 -8.28379 -6.31197 -0.67208 0.43730 0.87131 1.08412 1.31686 1.37351 1.48368 1.61114 1.80595 2.34258 3.07907 3.14879 3.77437 3.82984 4.02065 4.06574 4.08070 4.15986 4.27879 4.30875 4.31260 4.41775 4.49184 4.63440 4.65047 4.67464 4.71641 4.79811 4.80910 4.82297 4.87238 4.97231 5.05670 5.11476 5.16392 5.21158 5.23772 5.36173 5.43030 5.47151 5.65792 5.75251 6.16908 6.25811 6.37513 6.54855 6.76635 7.34529 8.88379 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.002997 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.478248 B = 9339.764896 C = 9728.502278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.543 3.457 4 O -0.534 6.534 5 C -0.303 4.303 6 C -0.026 4.026 7 C -0.135 4.135 8 C 0.116 3.884 9 N -0.533 5.533 10 C 0.066 3.934 11 C -0.113 4.113 12 C -0.122 4.122 13 C 0.022 3.978 14 H 0.029 0.971 15 C -0.515 4.515 16 H 0.035 0.965 17 C 0.013 3.987 18 N -0.951 5.951 19 Si 0.949 3.051 20 H -0.272 1.272 21 H -0.301 1.301 22 H -0.245 1.245 23 C 0.089 3.911 24 C -0.157 4.157 25 C -0.093 4.093 26 S 0.287 5.713 27 H 0.137 0.863 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.146 0.854 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.016 0.984 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.129 -18.371 9.232 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.390 3.610 4 O -0.426 6.426 5 C -0.421 4.421 6 C -0.061 4.061 7 C -0.146 4.146 8 C -0.013 4.013 9 N -0.258 5.258 10 C -0.062 4.062 11 C -0.150 4.150 12 C -0.160 4.160 13 C 0.003 3.997 14 H 0.047 0.953 15 C -0.554 4.554 16 H 0.053 0.947 17 C -0.184 4.184 18 N -0.592 5.592 19 Si 0.777 3.223 20 H -0.198 1.198 21 H -0.229 1.229 22 H -0.169 1.169 23 C -0.039 4.039 24 C -0.278 4.278 25 C -0.151 4.151 26 S 0.558 5.442 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.290 -20.088 8.974 29.929 hybrid contribution 0.034 2.993 -0.563 3.046 sum -20.257 -17.094 8.411 27.808 Atomic orbital electron populations 1.23621 0.73791 1.06088 1.02767 1.86569 1.25661 1.31153 1.84211 1.19808 0.87436 0.81779 0.72022 1.90871 1.66745 1.36891 1.48133 1.23347 0.93844 0.99891 1.24998 1.20646 0.92346 0.98447 0.94643 1.18410 0.93169 0.94884 1.08151 1.20676 0.96166 0.94319 0.90140 1.61963 1.07484 1.47807 1.08531 1.21994 0.93624 0.97982 0.92633 1.21603 0.97190 0.99717 0.96535 1.21933 0.96607 0.98830 0.98621 1.19052 0.92167 0.95499 0.92961 0.95323 1.21341 1.13491 1.24957 0.95598 0.94679 1.25816 0.94593 0.95482 1.02468 1.70047 1.22360 1.37844 1.28900 0.85830 0.76471 0.80789 0.79238 1.19807 1.22908 1.16914 1.21802 0.91684 0.92652 0.97734 1.24598 1.03163 0.97392 1.02649 1.20577 0.87975 1.02511 1.04085 1.82867 0.90727 1.04760 1.65880 0.84464 0.91680 0.91856 0.83622 0.88884 0.93952 0.95439 0.90166 0.91773 0.90657 0.94833 0.93495 0.92665 0.96558 0.91350 0.88652 0.89699 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.57 16 2 O -0.36 -6.93 10.42 -58.17 -0.61 -7.54 16 3 C 0.54 13.12 7.92 69.94 0.55 13.67 16 4 O -0.53 -15.66 16.64 19.42 0.32 -15.34 16 5 C -0.30 -6.81 6.45 24.05 0.16 -6.65 16 6 C -0.03 -0.61 8.78 21.73 0.19 -0.41 16 7 C -0.13 -3.05 4.44 -21.06 -0.09 -3.14 16 8 C 0.12 2.91 4.44 85.55 0.38 3.29 16 9 N -0.53 -16.43 4.42 -900.95 -3.98 -20.41 16 10 C 0.07 1.97 5.28 86.33 0.46 2.43 16 11 C -0.11 -3.72 6.09 30.65 0.19 -3.53 16 12 C -0.12 -5.10 4.74 30.68 0.15 -4.96 16 13 C 0.02 1.02 1.85 -11.49 -0.02 1.00 16 14 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 15 C -0.52 -29.05 9.14 25.60 0.23 -28.82 16 16 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 17 C 0.01 0.77 5.45 84.66 0.46 1.23 16 18 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 19 Si 0.95 45.49 24.36 68.60 1.67 47.16 16 20 H -0.27 -12.54 6.89 99.48 0.69 -11.86 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 22 H -0.25 -10.94 6.53 99.48 0.65 -10.29 16 23 C 0.09 3.37 4.68 86.32 0.40 3.78 16 24 C -0.16 -3.09 6.28 24.69 0.15 -2.93 16 25 C -0.09 -1.58 9.77 71.24 0.70 -0.88 16 26 S 0.29 4.98 22.87 -56.49 -1.29 3.69 16 27 H 0.14 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.09 2.16 7.58 -2.39 -0.02 2.14 16 32 H 0.04 1.05 8.06 -2.39 -0.02 1.03 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 2.20 6.37 -2.39 -0.02 2.18 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.03 1.47 3.37 -2.39 -0.01 1.46 16 38 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 2.56 8.01 -2.39 -0.02 2.54 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.08 1.77 7.24 -2.39 -0.02 1.75 16 Total: -1.00 -69.20 362.67 2.43 -66.77 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.92 Total: 9.35 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 5.10 Total: -24.36 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -3.68 Total: -79.73 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.28 Total: -22.87 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.16 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.29 Total: 3.69 kcal Total: -69.20 2.43 -66.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.522 kcal (2) G-P(sol) polarization free energy of solvation -69.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds