Wall clock time and date at job start Tue Mar 31 2020 13:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 300.00079 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00494 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.08995 * 109.47013 * 324.72129 * 14 13 11 16 16 C 1.50705 * 109.47438 * 84.72236 * 14 13 11 17 17 C 1.33387 * 125.20248 * 220.00310 * 16 14 13 18 18 C 1.38425 * 114.91747 * 179.97438 * 17 16 14 19 19 C 1.33381 * 114.92126 * 359.97438 * 18 17 16 20 20 S 1.75881 * 109.59780 * 359.75546 * 19 18 17 21 21 C 1.53004 * 109.47065 * 204.72115 * 14 13 11 22 22 C 1.53000 * 112.84844 * 290.33307 * 21 14 13 23 23 O 1.42900 * 109.46937 * 179.97438 * 22 21 14 24 24 C 1.53777 * 113.61447 * 159.13342 * 21 14 13 25 25 C 1.53950 * 87.02044 * 220.04831 * 24 21 14 26 26 C 1.53782 * 113.61127 * 61.52590 * 21 14 13 27 27 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 29 29 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 30 30 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 31 31 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.08002 * 122.53803 * 359.94641 * 17 16 14 34 34 H 1.08000 * 122.53329 * 180.02562 * 18 17 16 35 35 H 1.08006 * 125.19900 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46927 * 299.99995 * 22 21 14 37 37 H 1.09001 * 109.47200 * 59.99880 * 22 21 14 38 38 H 0.96705 * 113.99841 * 180.02562 * 23 22 21 39 39 H 1.08996 * 113.61684 * 334.57070 * 24 21 14 40 40 H 1.09007 * 113.61237 * 105.47151 * 24 21 14 41 41 H 1.08995 * 113.53876 * 270.81618 * 25 24 21 42 42 H 1.08997 * 113.74541 * 139.94208 * 25 24 21 43 43 H 1.08997 * 113.61393 * 254.53153 * 26 21 14 44 44 H 1.09002 * 113.61695 * 25.43537 * 26 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 1 0.5224 -7.2997 0.5818 16 6 1.0760 -7.7693 -1.4250 17 6 -0.0836 -8.3027 -1.8123 18 6 -0.1853 -8.5546 -3.1696 19 6 0.8915 -8.2253 -3.8846 20 16 2.1208 -7.5507 -2.8229 21 6 2.3102 -8.5014 0.5973 22 6 3.4945 -8.8757 -0.2962 23 8 4.2619 -9.9024 0.3355 24 6 1.5143 -9.7150 1.1057 25 6 2.4774 -9.7424 2.3063 26 6 2.7015 -8.2408 2.0616 27 1 -0.4849 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8898 30 1 2.8721 -3.6043 0.8894 31 1 2.8721 -3.6043 -0.8905 32 1 3.1359 -6.1343 -0.0004 33 1 -0.8825 -8.5218 -1.1193 34 1 -1.0699 -8.9844 -3.6160 35 1 0.9915 -8.3496 -4.9528 36 1 3.1255 -9.2360 -1.2565 37 1 4.1220 -7.9985 -0.4540 38 1 5.0309 -10.1895 -0.1758 39 1 0.4851 -9.4798 1.3768 40 1 1.5937 -10.5904 0.4609 41 1 3.3666 -10.3497 2.1373 42 1 1.9892 -9.9619 3.2558 43 1 3.7379 -7.9277 2.1875 44 1 1.9974 -7.6017 2.5945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597850300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:28 Heat of formation + Delta-G solvation = -41.105368 kcal Electronic energy + Delta-G solvation = -25542.776933 eV Core-core repulsion = 21973.226996 eV Total energy + Delta-G solvation = -3569.549936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62095 -38.77952 -37.64868 -36.02591 -34.45196 -33.43473 -31.33441 -30.29068 -28.34854 -26.36524 -25.77542 -25.09610 -23.77828 -22.27378 -21.19010 -19.86213 -19.18539 -18.70716 -17.84116 -17.35716 -16.78998 -15.97890 -15.68542 -15.53995 -15.28519 -14.94837 -14.67742 -14.40196 -14.19660 -13.35309 -13.17512 -12.95363 -12.87068 -12.62294 -12.37640 -12.33329 -12.18725 -12.15839 -11.87522 -11.49696 -11.14914 -10.94340 -10.80469 -10.71643 -10.58431 -10.56097 -10.27328 -10.07179 -9.95236 -9.65954 -9.20495 -9.05353 -8.93438 -8.61954 -8.37839 -8.31308 -5.95225 -3.99495 0.96873 1.60089 1.98851 2.73078 3.23427 3.33053 3.39641 3.42693 3.48224 3.86814 4.26064 4.45914 4.48417 4.55253 4.80510 4.89617 5.03536 5.06171 5.20954 5.34044 5.38594 5.39869 5.48192 5.54142 5.59622 5.66383 5.71661 5.78305 5.93053 5.94402 6.07834 6.18697 6.22954 6.24747 6.28039 6.41769 6.44200 6.68029 6.89641 7.35979 7.75541 7.83466 7.87400 8.08171 8.39604 8.76540 9.09236 9.64080 11.15764 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.003404 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.604012 B = 8223.391939 C = 9153.277980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.527 6.527 13 N -0.739 5.739 14 C 0.234 3.766 15 H 0.108 0.892 16 C -0.174 4.174 17 C -0.130 4.130 18 C -0.131 4.131 19 C -0.222 4.222 20 S 0.101 5.899 21 C -0.089 4.089 22 C 0.093 3.907 23 O -0.562 6.562 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.120 4.120 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.396 0.604 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.375 0.625 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 -24.214 -2.645 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.401 6.401 13 N -0.392 5.392 14 C 0.127 3.873 15 H 0.126 0.874 16 C -0.293 4.293 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.357 4.357 20 S 0.365 5.635 21 C -0.090 4.090 22 C 0.015 3.985 23 O -0.368 6.368 24 C -0.155 4.155 25 C -0.171 4.171 26 C -0.157 4.157 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.222 0.778 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.453 -23.406 -2.416 24.682 hybrid contribution -0.238 0.451 -0.535 0.740 sum 7.215 -22.954 -2.952 24.242 Atomic orbital electron populations 1.70011 1.06047 1.26440 1.50325 1.25021 0.94809 0.99207 0.95325 0.86548 0.80018 0.83889 0.77580 1.19749 1.21027 1.21022 1.21255 0.92949 0.91000 1.51210 0.92575 1.18894 0.93149 0.89356 0.98594 1.21871 1.00748 0.91836 1.02478 1.21602 0.88722 0.85502 0.74006 1.90676 1.14374 1.87435 1.47592 1.46322 1.09861 1.04943 1.78116 1.19233 0.96074 0.82867 0.89152 0.87412 1.25060 0.98608 1.06718 0.98926 1.20064 0.97476 1.02468 0.95999 1.20140 0.99265 1.03231 0.93496 1.25604 0.98368 1.08399 1.03350 1.84128 1.19047 1.62357 0.98010 1.22092 0.95480 0.95999 0.95422 1.22005 0.91478 0.90291 0.94691 1.86505 1.43586 1.57166 1.49535 1.22841 0.98025 0.96720 0.97892 1.22900 1.00217 0.96753 0.97244 1.22834 1.01863 0.97320 0.93701 0.93029 0.95847 0.95845 0.90207 0.90268 0.76949 0.84407 0.84462 0.82150 0.92291 0.93504 0.77828 0.90200 0.91229 0.88271 0.92228 0.91185 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 10 C -0.13 -2.63 5.64 -27.89 -0.16 -2.79 16 11 C 0.51 9.78 7.78 -10.98 -0.09 9.69 16 12 O -0.53 -12.31 15.65 5.55 0.09 -12.23 16 13 N -0.74 -10.30 4.60 -54.93 -0.25 -10.55 16 14 C 0.23 2.98 1.91 -69.08 -0.13 2.85 16 15 H 0.11 1.58 7.40 -51.93 -0.38 1.20 16 16 C -0.17 -2.24 4.63 -36.00 -0.17 -2.41 16 17 C -0.13 -1.62 10.04 -41.21 -0.41 -2.04 16 18 C -0.13 -1.48 10.18 -41.21 -0.42 -1.90 16 19 C -0.22 -2.44 11.23 29.03 0.33 -2.12 16 20 S 0.10 1.18 20.91 -107.50 -2.25 -1.07 16 21 C -0.09 -0.90 0.60 -153.70 -0.09 -0.99 16 22 C 0.09 0.82 5.53 37.16 0.21 1.03 16 23 O -0.56 -4.42 10.53 -35.23 -0.37 -4.79 16 24 C -0.12 -1.13 7.04 -25.83 -0.18 -1.31 16 25 C -0.13 -1.27 7.54 -25.83 -0.19 -1.46 16 26 C -0.12 -1.22 6.86 -25.92 -0.18 -1.40 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.40 4.54 7.72 -40.82 -0.32 4.23 16 33 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.06 0.54 5.96 -51.93 -0.31 0.23 16 37 H 0.05 0.39 7.32 -51.93 -0.38 0.01 16 38 H 0.37 1.47 9.12 45.56 0.42 1.88 16 39 H 0.08 0.76 7.99 -51.93 -0.41 0.35 16 40 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 41 H 0.10 0.97 6.15 -51.93 -0.32 0.65 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -34.76 370.45 -9.39 -44.15 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.89 Total: 4.64 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.02 Total: -15.65 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.48 Total: -37.38 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.28 Total: -17.02 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.25 Total: -1.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.76 -9.39 -44.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597850300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.049 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds