Wall clock time and date at job start Tue Mar 31 2020 13:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 300.00079 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00494 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.08995 * 109.47013 * 324.72129 * 14 13 11 16 16 C 1.50705 * 109.47438 * 84.72236 * 14 13 11 17 17 C 1.33387 * 125.20248 * 220.00310 * 16 14 13 18 18 C 1.38425 * 114.91747 * 179.97438 * 17 16 14 19 19 C 1.33381 * 114.92126 * 359.97438 * 18 17 16 20 20 S 1.75881 * 109.59780 * 359.75546 * 19 18 17 21 21 C 1.53004 * 109.47065 * 204.72115 * 14 13 11 22 22 C 1.53000 * 112.84844 * 290.33307 * 21 14 13 23 23 O 1.42900 * 109.46937 * 179.97438 * 22 21 14 24 24 C 1.53777 * 113.61447 * 159.13342 * 21 14 13 25 25 C 1.53950 * 87.02044 * 220.04831 * 24 21 14 26 26 C 1.53782 * 113.61127 * 61.52590 * 21 14 13 27 27 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 29 29 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 30 30 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 31 31 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.08002 * 122.53803 * 359.94641 * 17 16 14 34 34 H 1.08000 * 122.53329 * 180.02562 * 18 17 16 35 35 H 1.08006 * 125.19900 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46927 * 299.99995 * 22 21 14 37 37 H 1.09001 * 109.47200 * 59.99880 * 22 21 14 38 38 H 0.96705 * 113.99841 * 180.02562 * 23 22 21 39 39 H 1.08996 * 113.61684 * 334.57070 * 24 21 14 40 40 H 1.09007 * 113.61237 * 105.47151 * 24 21 14 41 41 H 1.08995 * 113.53876 * 270.81618 * 25 24 21 42 42 H 1.08997 * 113.74541 * 139.94208 * 25 24 21 43 43 H 1.08997 * 113.61393 * 254.53153 * 26 21 14 44 44 H 1.09002 * 113.61695 * 25.43537 * 26 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 1 0.5224 -7.2997 0.5818 16 6 1.0760 -7.7693 -1.4250 17 6 -0.0836 -8.3027 -1.8123 18 6 -0.1853 -8.5546 -3.1696 19 6 0.8915 -8.2253 -3.8846 20 16 2.1208 -7.5507 -2.8229 21 6 2.3102 -8.5014 0.5973 22 6 3.4945 -8.8757 -0.2962 23 8 4.2619 -9.9024 0.3355 24 6 1.5143 -9.7150 1.1057 25 6 2.4774 -9.7424 2.3063 26 6 2.7015 -8.2408 2.0616 27 1 -0.4849 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8898 30 1 2.8721 -3.6043 0.8894 31 1 2.8721 -3.6043 -0.8905 32 1 3.1359 -6.1343 -0.0004 33 1 -0.8825 -8.5218 -1.1193 34 1 -1.0699 -8.9844 -3.6160 35 1 0.9915 -8.3496 -4.9528 36 1 3.1255 -9.2360 -1.2565 37 1 4.1220 -7.9985 -0.4540 38 1 5.0309 -10.1895 -0.1758 39 1 0.4851 -9.4798 1.3768 40 1 1.5937 -10.5904 0.4609 41 1 3.3666 -10.3497 2.1373 42 1 1.9892 -9.9619 3.2558 43 1 3.7379 -7.9277 2.1875 44 1 1.9974 -7.6017 2.5945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597850300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:28 Heat of formation + Delta-G solvation = -64.824809 kcal Electronic energy + Delta-G solvation = -25543.805485 eV Core-core repulsion = 21973.226996 eV Total energy + Delta-G solvation = -3570.578488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.61974 -40.14006 -38.56775 -36.70760 -35.75328 -35.47908 -33.13651 -31.61879 -29.18730 -27.93920 -26.62431 -26.43748 -24.64822 -23.84169 -22.47497 -21.32983 -20.14636 -19.56665 -18.89273 -18.43423 -18.35828 -17.38782 -16.97568 -16.56988 -16.39510 -16.31423 -15.99228 -15.70414 -15.24655 -14.69166 -14.52941 -14.20955 -13.87885 -13.84888 -13.61928 -13.43908 -13.23779 -13.18811 -13.15626 -12.84941 -12.72030 -12.44758 -12.39238 -11.93070 -11.73816 -11.65676 -11.58418 -11.34064 -11.27962 -11.05234 -10.79590 -10.72205 -10.57753 -10.24311 -9.57944 -9.27918 -8.17786 -6.31704 0.04024 0.67898 1.07106 1.42245 1.43549 1.56808 1.69303 1.80371 2.20905 2.44432 3.15467 3.19092 3.39622 3.60978 3.75092 3.94391 4.02377 4.07359 4.22411 4.30348 4.41319 4.51508 4.54138 4.56606 4.60346 4.67183 4.71583 4.80352 4.86410 4.91802 5.05414 5.12774 5.16289 5.17747 5.33129 5.38922 5.41162 5.50406 5.58793 5.63353 5.66492 5.85686 6.17970 6.52968 6.86847 6.95594 7.31142 7.38737 8.95086 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.003404 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.604012 B = 8223.391939 C = 9153.277980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.044 3.956 10 C -0.120 4.120 11 C 0.518 3.482 12 O -0.579 6.579 13 N -0.714 5.714 14 C 0.237 3.763 15 H 0.083 0.917 16 C -0.196 4.196 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.220 4.220 20 S 0.107 5.893 21 C -0.083 4.083 22 C 0.099 3.901 23 O -0.570 6.570 24 C -0.116 4.116 25 C -0.126 4.126 26 C -0.122 4.122 27 H 0.262 0.738 28 H -0.019 1.019 29 H -0.018 1.018 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.413 0.587 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.186 0.814 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.394 0.606 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.296 -24.913 -3.332 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.007 3.993 10 C -0.159 4.159 11 C 0.306 3.694 12 O -0.457 6.457 13 N -0.367 5.367 14 C 0.130 3.870 15 H 0.101 0.899 16 C -0.314 4.314 17 C -0.172 4.172 18 C -0.173 4.173 19 C -0.356 4.356 20 S 0.371 5.629 21 C -0.084 4.084 22 C 0.021 3.979 23 O -0.378 6.378 24 C -0.154 4.154 25 C -0.163 4.163 26 C -0.160 4.160 27 H 0.071 0.929 28 H -0.001 1.001 29 H 0.001 0.999 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.250 0.750 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.204 0.796 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.244 0.756 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.304 -24.162 -3.108 26.450 hybrid contribution -1.131 0.581 -0.343 1.317 sum 9.172 -23.581 -3.452 25.536 Atomic orbital electron populations 1.70189 1.08310 1.27694 1.51593 1.26121 0.95692 1.03891 0.94652 0.85288 0.79348 0.78161 0.77537 1.17569 1.20660 1.20644 1.21737 0.93985 0.91581 1.50602 0.90612 1.18666 0.93635 0.92419 0.94625 1.21645 0.99375 0.90115 1.04789 1.21311 0.87862 0.86502 0.73694 1.90664 1.16511 1.88166 1.50398 1.45980 1.10580 1.04162 1.75952 1.19236 0.95611 0.82646 0.89474 0.89930 1.25065 0.99433 1.07711 0.99222 1.20316 0.97482 1.02482 0.96952 1.20378 1.00340 1.03569 0.92973 1.25987 0.97732 1.07313 1.04521 1.83996 1.19005 1.62444 0.97495 1.22068 0.95841 0.95105 0.95371 1.21861 0.91073 0.90941 0.94013 1.86449 1.44480 1.56782 1.50086 1.22831 0.97926 0.96510 0.98099 1.22842 1.00144 0.96006 0.97281 1.22824 1.01748 0.97777 0.93604 0.92904 1.00092 0.99933 0.87691 0.87926 0.75033 0.84340 0.82421 0.79634 0.92425 0.92766 0.75610 0.90630 0.90952 0.87985 0.91758 0.90629 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.87 13.29 21.45 0.28 -59.59 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 4 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.48 4.26 29.85 0.13 2.61 16 10 C -0.12 -4.82 5.64 29.85 0.17 -4.65 16 11 C 0.52 20.04 7.78 87.66 0.68 20.72 16 12 O -0.58 -28.45 15.65 -3.04 -0.05 -28.50 16 13 N -0.71 -19.53 4.60 -446.09 -2.05 -21.58 16 14 C 0.24 6.06 1.91 44.25 0.08 6.14 16 15 H 0.08 2.56 7.40 -2.39 -0.02 2.54 16 16 C -0.20 -4.98 4.63 24.59 0.11 -4.87 16 17 C -0.14 -3.54 10.04 21.22 0.21 -3.33 16 18 C -0.14 -3.07 10.18 21.21 0.22 -2.85 16 19 C -0.22 -4.45 11.23 66.72 0.75 -3.70 16 20 S 0.11 2.35 20.91 -56.49 -1.18 1.17 16 21 C -0.08 -1.60 0.60 -51.65 -0.03 -1.63 16 22 C 0.10 1.54 5.53 71.98 0.40 1.94 16 23 O -0.57 -7.48 10.53 -148.98 -1.57 -9.05 16 24 C -0.12 -2.16 7.04 31.18 0.22 -1.94 16 25 C -0.13 -2.21 7.54 31.18 0.24 -1.98 16 26 C -0.12 -2.38 6.86 31.12 0.21 -2.16 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H -0.02 -1.24 8.10 -2.39 -0.02 -1.25 16 29 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 30 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.41 8.68 7.72 -92.71 -0.72 7.97 16 33 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.06 0.93 5.96 -2.39 -0.01 0.92 16 37 H 0.05 0.76 7.32 -2.39 -0.02 0.74 16 38 H 0.39 1.93 9.12 -74.05 -0.68 1.26 16 39 H 0.08 1.46 7.99 -2.39 -0.02 1.44 16 40 H 0.07 1.31 8.10 -2.38 -0.02 1.29 16 41 H 0.10 1.79 6.15 -2.39 -0.01 1.77 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 44 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -78.07 370.45 1.18 -76.90 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.37 Total: 20.44 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 4.08 Total: -26.29 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.77 Total: -81.17 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.62 Total: -37.55 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.18 Total: 1.17 kcal Total: -78.07 1.18 -76.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597850300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.073 kcal (2) G-P(sol) polarization free energy of solvation -78.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds