Wall clock time and date at job start Tue Mar 31 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.46609 * 2 1 4 4 S 1.65600 * 119.99889 * 54.38578 * 3 2 1 5 5 O 1.42099 * 106.40022 * 179.51444 * 4 3 2 6 6 O 1.42104 * 106.40184 * 46.59938 * 4 3 2 7 7 C 1.76195 * 107.21778 * 293.05669 * 4 3 2 8 8 C 1.37643 * 120.12904 * 116.91714 * 7 4 3 9 9 C 1.38611 * 120.24917 * 180.27381 * 8 7 4 10 10 C 1.38657 * 120.50029 * 359.76022 * 9 8 7 11 11 C 1.37599 * 120.24970 * 359.95688 * 10 9 8 12 12 C 1.40694 * 120.12988 * 296.65094 * 7 4 3 13 13 C 1.41404 * 120.24217 * 359.97438 * 12 7 4 14 14 H 1.07994 * 119.99981 * 32.08649 * 13 12 7 15 15 C 1.39950 * 119.99700 * 212.09360 * 13 12 7 16 16 N 1.30820 * 120.00101 * 24.91257 * 15 13 12 17 17 Si 1.86797 * 119.99497 * 204.91579 * 15 13 12 18 18 H 1.48496 * 109.46931 * 179.97438 * 17 15 13 19 19 H 1.48508 * 109.47278 * 299.99799 * 17 15 13 20 20 H 1.48502 * 109.47256 * 59.99797 * 17 15 13 21 21 C 1.52997 * 109.47156 * 119.99900 * 2 1 3 22 22 C 1.52997 * 109.47024 * 180.02562 * 21 2 1 23 23 C 1.53001 * 109.47045 * 299.99770 * 22 21 2 24 24 C 1.52997 * 109.47139 * 59.99852 * 23 22 21 25 25 C 1.52991 * 109.47214 * 240.00276 * 2 1 3 26 26 H 1.08999 * 109.47582 * 52.70392 * 1 2 3 27 27 H 1.09002 * 109.46749 * 172.69841 * 1 2 3 28 28 H 1.09002 * 109.47536 * 292.69342 * 1 2 3 29 29 H 0.96998 * 119.99788 * 234.38592 * 3 2 1 30 30 H 1.08004 * 119.87415 * 0.02562 * 8 7 4 31 31 H 1.07998 * 119.75237 * 179.73868 * 9 8 7 32 32 H 1.07995 * 119.87552 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.12895 * 180.02562 * 11 10 9 34 34 H 0.96997 * 120.00416 * 3.47823 * 16 15 13 35 35 H 1.08999 * 109.47355 * 300.00052 * 21 2 1 36 36 H 1.08991 * 109.47263 * 60.00279 * 21 2 1 37 37 H 1.09005 * 109.47275 * 180.02562 * 22 21 2 38 38 H 1.09000 * 109.47596 * 59.99841 * 22 21 2 39 39 H 1.09000 * 109.46982 * 300.00447 * 23 22 21 40 40 H 1.09003 * 109.47406 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.47500 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.47131 * 60.00215 * 24 23 22 43 43 H 1.09005 * 109.47409 * 299.99238 * 25 2 1 44 44 H 1.08996 * 109.47321 * 59.99638 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 16 1.5068 2.4403 1.1659 5 8 2.1593 3.6745 0.9010 6 8 1.6146 1.7546 2.4059 7 6 -0.2124 2.7191 0.8993 8 6 -1.1292 2.3474 1.8563 9 6 -2.4828 2.5604 1.6467 10 6 -2.9287 3.1535 0.4754 11 6 -2.0297 3.5384 -0.4926 12 6 -0.6531 3.3276 -0.2903 13 6 0.2801 3.7192 -1.2779 14 1 1.1895 3.1534 -1.4162 15 6 0.0251 4.8402 -2.0761 16 7 -0.7638 5.7881 -1.6397 17 14 0.8113 4.9827 -3.7645 18 1 0.3845 6.2534 -4.4036 19 1 2.2898 4.9705 -3.6248 20 1 0.3843 3.8373 -4.6077 21 6 2.0400 -0.7212 1.2492 22 6 3.5700 -0.7206 1.2495 23 6 4.0805 -1.4416 0.0003 24 6 3.5704 -0.7204 -1.2490 25 6 2.0400 -0.7211 -1.2492 26 1 -0.3634 0.6227 -0.8175 27 1 -0.3633 -1.0194 -0.1306 28 1 -0.3634 0.3965 0.9481 29 1 2.6411 1.6756 -0.6829 30 1 -0.7930 1.8844 2.7723 31 1 -3.1954 2.2618 2.4012 32 1 -3.9856 3.3143 0.3224 33 1 -2.3792 4.0006 -1.4039 34 1 -1.1318 5.7387 -0.7436 35 1 1.6767 -0.2074 2.1392 36 1 1.6768 -1.7488 1.2492 37 1 3.9334 -1.2349 2.1393 38 1 3.9330 0.3071 1.2497 39 1 3.7174 -2.4694 0.0001 40 1 5.1705 -1.4416 0.0007 41 1 3.9344 -1.2337 -2.1389 42 1 3.9334 0.3074 -1.2488 43 1 1.6768 -1.7489 -1.2492 44 1 1.6767 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601312888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:23 Heat of formation + Delta-G solvation = -83.685757 kcal Electronic energy + Delta-G solvation = -27586.165127 eV Core-core repulsion = 24014.768766 eV Total energy + Delta-G solvation = -3571.396360 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.26303 -37.86562 -36.22866 -34.85091 -34.07090 -33.71477 -30.60789 -30.33749 -29.99720 -29.42735 -26.12809 -25.30257 -22.51802 -21.80507 -21.25505 -21.13521 -19.56888 -18.37909 -18.14095 -16.90716 -16.32234 -15.43132 -15.09888 -14.82187 -14.51284 -14.18660 -13.92864 -13.90654 -13.61830 -13.33427 -13.04815 -12.77626 -12.49166 -12.39895 -12.18538 -11.93633 -11.79705 -11.45122 -11.25964 -11.19373 -11.13540 -11.06936 -11.01287 -10.93121 -10.68939 -10.52540 -10.50682 -10.39236 -10.18233 -9.84687 -9.61264 -9.43798 -9.19945 -8.74534 -8.13360 -7.79038 -7.47119 -4.82153 1.54887 2.22415 2.64168 3.06724 3.15704 3.25272 3.87560 3.89502 4.35084 4.67151 4.87666 4.90315 4.93725 5.11628 5.31656 5.36445 5.49141 5.55477 5.61375 5.70488 5.77026 5.84323 5.90857 5.93214 6.03479 6.05224 6.16573 6.22993 6.26384 6.27787 6.31914 6.36973 6.52902 6.59993 6.69084 6.77826 6.83650 6.91765 7.12210 7.27519 7.36793 7.52160 7.61650 7.66887 7.82913 7.97869 8.35218 8.58526 9.81619 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.006717 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.846786 B = 4167.343312 C = 5193.808622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.192 3.808 3 N -1.109 6.109 4 S 2.703 3.297 5 O -0.970 6.970 6 O -0.994 6.994 7 C -0.771 4.771 8 C 0.011 3.989 9 C -0.260 4.260 10 C -0.057 4.057 11 C -0.206 4.206 12 C 0.169 3.831 13 C -0.507 4.507 14 H 0.087 0.913 15 C 0.045 3.955 16 N -0.774 5.774 17 Si 1.062 2.938 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.271 1.271 21 C -0.150 4.150 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.410 0.590 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.302 0.698 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -11.124 -1.300 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.103 3.897 3 N -0.866 5.866 4 S 2.800 3.200 5 O -0.961 6.961 6 O -0.985 6.985 7 C -0.866 4.866 8 C -0.009 4.009 9 C -0.281 4.281 10 C -0.076 4.076 11 C -0.226 4.226 12 C 0.164 3.836 13 C -0.534 4.534 14 H 0.105 0.895 15 C -0.180 4.180 16 N -0.395 5.395 17 Si 0.884 3.116 18 H -0.195 1.195 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.189 4.189 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.153 4.153 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.244 0.756 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.714 -9.805 -1.822 11.031 hybrid contribution -0.756 -0.889 0.748 1.386 sum 3.958 -10.694 -1.074 11.453 Atomic orbital electron populations 1.22612 0.94137 1.02429 1.04670 1.19952 0.93275 0.81005 0.95491 1.55734 1.60441 1.21418 1.48976 1.01002 0.74743 0.72059 0.72209 1.93536 1.75167 1.42404 1.84952 1.93395 1.87619 1.74665 1.42776 1.29910 1.21469 1.30279 1.04922 1.20280 0.93060 0.92263 0.95317 1.20439 0.94866 1.13006 0.99758 1.20818 0.97564 0.95393 0.93781 1.21276 0.93324 1.08362 0.99638 1.16952 0.92282 0.86123 0.88202 1.20820 1.05577 1.12101 1.14859 0.89529 1.27058 0.94581 0.91429 1.04952 1.70453 1.19442 1.28849 1.20748 0.83678 0.77102 0.77781 0.73015 1.19525 1.19449 1.19650 1.22407 0.96033 1.00794 0.99624 1.21408 0.95946 1.00714 0.96915 1.21555 0.99698 0.99170 0.95172 1.21542 0.95698 1.00986 0.97577 1.21768 0.95589 1.00491 0.97444 0.90585 0.92058 0.90921 0.75617 0.87337 0.88615 0.88735 0.87571 0.88480 0.87882 0.91741 0.92410 0.92030 0.92322 0.92545 0.92211 0.91734 0.91100 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 7.18 37.16 0.27 -2.63 16 2 C 0.19 2.87 0.74 -131.82 -0.10 2.77 16 3 N -1.11 -19.16 3.59 0.54 0.00 -19.15 16 4 S 2.70 57.96 4.67 -107.50 -0.50 57.46 16 5 O -0.97 -24.36 16.78 -57.17 -0.96 -25.32 16 6 O -0.99 -21.46 13.82 -57.17 -0.79 -22.25 16 7 C -0.77 -17.55 3.64 -38.87 -0.14 -17.69 16 8 C 0.01 0.23 7.77 -39.66 -0.31 -0.08 16 9 C -0.26 -5.40 10.05 -39.29 -0.39 -5.80 16 10 C -0.06 -1.21 10.02 -39.66 -0.40 -1.60 16 11 C -0.21 -4.83 8.02 -38.87 -0.31 -5.14 16 12 C 0.17 4.09 4.67 -106.82 -0.50 3.59 16 13 C -0.51 -12.33 7.48 -37.74 -0.28 -12.61 16 14 H 0.09 1.98 5.86 -52.49 -0.31 1.67 16 15 C 0.04 1.08 4.90 -17.34 -0.09 0.99 16 16 N -0.77 -19.72 12.64 55.55 0.70 -19.02 16 17 Si 1.06 20.46 30.00 -169.99 -5.10 15.36 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 21 C -0.15 -2.18 4.44 -26.73 -0.12 -2.29 16 22 C -0.11 -1.50 5.77 -26.73 -0.15 -1.65 16 23 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 24 C -0.12 -1.36 5.75 -26.71 -0.15 -1.51 16 25 C -0.11 -1.41 4.80 -26.71 -0.13 -1.54 16 26 H 0.08 1.35 7.50 -51.93 -0.39 0.96 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.28 4.89 -51.93 -0.25 1.03 16 29 H 0.41 6.52 6.89 -34.47 -0.24 6.29 16 30 H 0.11 2.18 7.33 -52.48 -0.38 1.79 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.11 2.52 7.01 -52.49 -0.37 2.15 16 34 H 0.30 7.95 6.86 -40.82 -0.28 7.67 16 35 H 0.10 1.75 5.42 -51.93 -0.28 1.47 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.91 7.60 -51.93 -0.39 0.51 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.76 6.75 -51.93 -0.35 0.41 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -28.60 341.34 -10.74 -39.34 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -6.27 Total: 15.12 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: -2.96 Total: -46.67 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.70 Total: -38.17 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.75 Total: -47.57 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.10 Total: 15.36 kcal Atomic # 16 Polarization: 57.96 SS G_CDS: -0.50 Total: 57.46 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.60 -10.74 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601312888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.345 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds