Wall clock time and date at job start Tue Mar 31 2020 14:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.46609 * 2 1 4 4 S 1.65600 * 119.99889 * 54.38578 * 3 2 1 5 5 O 1.42099 * 106.40022 * 179.51444 * 4 3 2 6 6 O 1.42104 * 106.40184 * 46.59938 * 4 3 2 7 7 C 1.76195 * 107.21778 * 293.05669 * 4 3 2 8 8 C 1.37643 * 120.12904 * 116.91714 * 7 4 3 9 9 C 1.38611 * 120.24917 * 180.27381 * 8 7 4 10 10 C 1.38657 * 120.50029 * 359.76022 * 9 8 7 11 11 C 1.37599 * 120.24970 * 359.95688 * 10 9 8 12 12 C 1.40694 * 120.12988 * 296.65094 * 7 4 3 13 13 C 1.41404 * 120.24217 * 359.97438 * 12 7 4 14 14 H 1.07994 * 119.99981 * 32.08649 * 13 12 7 15 15 C 1.39950 * 119.99700 * 212.09360 * 13 12 7 16 16 N 1.30820 * 120.00101 * 24.91257 * 15 13 12 17 17 Si 1.86797 * 119.99497 * 204.91579 * 15 13 12 18 18 H 1.48496 * 109.46931 * 179.97438 * 17 15 13 19 19 H 1.48508 * 109.47278 * 299.99799 * 17 15 13 20 20 H 1.48502 * 109.47256 * 59.99797 * 17 15 13 21 21 C 1.52997 * 109.47156 * 119.99900 * 2 1 3 22 22 C 1.52997 * 109.47024 * 180.02562 * 21 2 1 23 23 C 1.53001 * 109.47045 * 299.99770 * 22 21 2 24 24 C 1.52997 * 109.47139 * 59.99852 * 23 22 21 25 25 C 1.52991 * 109.47214 * 240.00276 * 2 1 3 26 26 H 1.08999 * 109.47582 * 52.70392 * 1 2 3 27 27 H 1.09002 * 109.46749 * 172.69841 * 1 2 3 28 28 H 1.09002 * 109.47536 * 292.69342 * 1 2 3 29 29 H 0.96998 * 119.99788 * 234.38592 * 3 2 1 30 30 H 1.08004 * 119.87415 * 0.02562 * 8 7 4 31 31 H 1.07998 * 119.75237 * 179.73868 * 9 8 7 32 32 H 1.07995 * 119.87552 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.12895 * 180.02562 * 11 10 9 34 34 H 0.96997 * 120.00416 * 3.47823 * 16 15 13 35 35 H 1.08999 * 109.47355 * 300.00052 * 21 2 1 36 36 H 1.08991 * 109.47263 * 60.00279 * 21 2 1 37 37 H 1.09005 * 109.47275 * 180.02562 * 22 21 2 38 38 H 1.09000 * 109.47596 * 59.99841 * 22 21 2 39 39 H 1.09000 * 109.46982 * 300.00447 * 23 22 21 40 40 H 1.09003 * 109.47406 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.47500 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.47131 * 60.00215 * 24 23 22 43 43 H 1.09005 * 109.47409 * 299.99238 * 25 2 1 44 44 H 1.08996 * 109.47321 * 59.99638 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 16 1.5068 2.4403 1.1659 5 8 2.1593 3.6745 0.9010 6 8 1.6146 1.7546 2.4059 7 6 -0.2124 2.7191 0.8993 8 6 -1.1292 2.3474 1.8563 9 6 -2.4828 2.5604 1.6467 10 6 -2.9287 3.1535 0.4754 11 6 -2.0297 3.5384 -0.4926 12 6 -0.6531 3.3276 -0.2903 13 6 0.2801 3.7192 -1.2779 14 1 1.1895 3.1534 -1.4162 15 6 0.0251 4.8402 -2.0761 16 7 -0.7638 5.7881 -1.6397 17 14 0.8113 4.9827 -3.7645 18 1 0.3845 6.2534 -4.4036 19 1 2.2898 4.9705 -3.6248 20 1 0.3843 3.8373 -4.6077 21 6 2.0400 -0.7212 1.2492 22 6 3.5700 -0.7206 1.2495 23 6 4.0805 -1.4416 0.0003 24 6 3.5704 -0.7204 -1.2490 25 6 2.0400 -0.7211 -1.2492 26 1 -0.3634 0.6227 -0.8175 27 1 -0.3633 -1.0194 -0.1306 28 1 -0.3634 0.3965 0.9481 29 1 2.6411 1.6756 -0.6829 30 1 -0.7930 1.8844 2.7723 31 1 -3.1954 2.2618 2.4012 32 1 -3.9856 3.3143 0.3224 33 1 -2.3792 4.0006 -1.4039 34 1 -1.1318 5.7387 -0.7436 35 1 1.6767 -0.2074 2.1392 36 1 1.6768 -1.7488 1.2492 37 1 3.9334 -1.2349 2.1393 38 1 3.9330 0.3071 1.2497 39 1 3.7174 -2.4694 0.0001 40 1 5.1705 -1.4416 0.0007 41 1 3.9344 -1.2337 -2.1389 42 1 3.9334 0.3074 -1.2488 43 1 1.6768 -1.7489 -1.2492 44 1 1.6767 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601312888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:22 Heat of formation + Delta-G solvation = -100.246382 kcal Electronic energy + Delta-G solvation = -27586.883249 eV Core-core repulsion = 24014.768766 eV Total energy + Delta-G solvation = -3572.114483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.42367 -39.59952 -38.00193 -36.67115 -35.84348 -34.87237 -32.03398 -31.62092 -31.54270 -31.03177 -27.31232 -27.04182 -23.56431 -23.51383 -23.02390 -22.23821 -20.82024 -20.09360 -19.72601 -18.46267 -17.98539 -16.95372 -16.64460 -16.23449 -15.88901 -15.71272 -15.46197 -15.13593 -15.04228 -14.87988 -14.48435 -14.20810 -14.06166 -13.72891 -13.51465 -13.28888 -13.15285 -12.99729 -12.90644 -12.82129 -12.71432 -12.51201 -12.33060 -12.26053 -12.15099 -12.00291 -11.89183 -11.58939 -11.44315 -11.30339 -11.02747 -10.94200 -10.71316 -10.15939 -9.87302 -9.57395 -9.31838 -6.67060 -0.13816 0.45044 0.88298 1.49131 1.62060 1.75978 2.29650 2.32755 2.60384 2.98109 3.33128 3.75892 3.81083 3.92214 3.93194 4.23153 4.28064 4.31448 4.34919 4.38615 4.59166 4.61868 4.67863 4.70838 4.83054 4.84778 4.91031 4.95826 5.06722 5.10743 5.23436 5.28570 5.29326 5.32962 5.33646 5.48726 5.50381 5.51570 5.59116 5.62187 5.69515 5.71209 5.85636 6.02048 6.18802 6.29853 6.56597 6.79670 7.93342 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.006717 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.846786 B = 4167.343312 C = 5193.808622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.186 3.814 3 N -1.097 6.097 4 S 2.716 3.284 5 O -1.013 7.013 6 O -0.998 6.998 7 C -0.778 4.778 8 C 0.000 4.000 9 C -0.254 4.254 10 C -0.054 4.054 11 C -0.228 4.228 12 C 0.154 3.846 13 C -0.536 4.536 14 H 0.092 0.908 15 C 0.009 3.991 16 N -0.802 5.802 17 Si 1.103 2.897 18 H -0.272 1.272 19 H -0.258 1.258 20 H -0.249 1.249 21 C -0.150 4.150 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.110 4.110 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.416 0.584 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.284 0.716 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -13.779 -1.926 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 N -0.858 5.858 4 S 2.812 3.188 5 O -1.003 7.003 6 O -0.989 6.989 7 C -0.872 4.872 8 C -0.020 4.020 9 C -0.274 4.274 10 C -0.073 4.073 11 C -0.248 4.248 12 C 0.150 3.850 13 C -0.564 4.564 14 H 0.110 0.890 15 C -0.210 4.210 16 N -0.424 5.424 17 Si 0.919 3.081 18 H -0.197 1.197 19 H -0.182 1.182 20 H -0.173 1.173 21 C -0.189 4.189 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.252 0.748 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.030 -12.471 -2.430 13.665 hybrid contribution -0.927 -0.197 1.121 1.468 sum 4.102 -12.668 -1.309 13.380 Atomic orbital electron populations 1.22592 0.95008 1.03552 1.02649 1.20220 0.92659 0.79736 0.97514 1.55419 1.60143 1.21930 1.48273 1.00455 0.74071 0.71628 0.72631 1.93475 1.75904 1.45188 1.85736 1.93396 1.87486 1.74423 1.43550 1.30142 1.22527 1.29754 1.04738 1.20567 0.93560 0.92316 0.95572 1.20851 0.95163 1.11371 1.00033 1.21166 0.98831 0.94082 0.93222 1.21308 0.93692 1.09651 1.00182 1.17200 0.92824 0.86319 0.88665 1.21018 1.06337 1.12918 1.16103 0.88986 1.28395 0.94037 0.90795 1.07743 1.70575 1.21874 1.30003 1.19950 0.83219 0.76940 0.78413 0.69497 1.19673 1.18237 1.17274 1.22375 0.96948 1.01683 0.97863 1.21452 0.95091 1.00024 0.98855 1.21527 1.00422 0.99577 0.93479 1.21579 0.94793 1.00794 0.98766 1.21773 0.96422 1.01205 0.95454 0.92796 0.89221 0.92800 0.74818 0.86015 0.85358 0.85807 0.88818 0.90436 0.90703 0.89194 0.91550 0.94201 0.90530 0.91393 0.89977 0.92865 0.88707 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.57 7.18 71.98 0.52 -5.05 16 2 C 0.19 5.31 0.74 3.60 0.00 5.31 16 3 N -1.10 -37.82 3.59 -152.21 -0.55 -38.37 16 4 S 2.72 118.64 4.67 -56.49 -0.26 118.38 16 5 O -1.01 -52.55 16.78 -128.00 -2.15 -54.70 16 6 O -1.00 -43.53 13.82 -128.00 -1.77 -45.30 16 7 C -0.78 -35.92 3.64 22.73 0.08 -35.83 16 8 C 0.00 -0.02 7.77 22.22 0.17 0.15 16 9 C -0.25 -10.14 10.05 22.46 0.23 -9.91 16 10 C -0.05 -2.27 10.02 22.22 0.22 -2.04 16 11 C -0.23 -10.91 8.02 22.73 0.18 -10.73 16 12 C 0.15 7.66 4.67 -21.29 -0.10 7.56 16 13 C -0.54 -26.86 7.48 23.46 0.18 -26.68 16 14 H 0.09 4.32 5.86 -2.91 -0.02 4.31 16 15 C 0.01 0.43 4.90 85.26 0.42 0.85 16 16 N -0.80 -42.52 12.64 21.83 0.28 -42.24 16 17 Si 1.10 41.36 30.00 68.60 2.06 43.41 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 21 C -0.15 -4.08 4.44 30.59 0.14 -3.94 16 22 C -0.12 -2.89 5.77 30.59 0.18 -2.72 16 23 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 24 C -0.12 -2.38 5.75 30.61 0.18 -2.21 16 25 C -0.11 -2.39 4.80 30.60 0.15 -2.25 16 26 H 0.05 1.90 7.50 -2.39 -0.02 1.89 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.86 4.89 -2.39 -0.01 1.85 16 29 H 0.42 13.29 6.89 -96.75 -0.67 12.62 16 30 H 0.12 4.79 7.33 -2.91 -0.02 4.77 16 31 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.09 4.63 7.01 -2.91 -0.02 4.61 16 34 H 0.28 15.75 6.86 -92.71 -0.64 15.12 16 35 H 0.07 2.49 5.42 -2.39 -0.01 2.47 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.04 1.14 7.60 -2.39 -0.02 1.13 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 1.16 6.75 -2.38 -0.02 1.14 16 43 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -63.73 341.34 0.80 -62.92 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: 0.48 Total: 45.33 kcal Atomic # 6 Polarization: -92.15 SS G_CDS: 2.72 Total: -89.44 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -0.27 Total: -80.61 kcal Atomic # 8 Polarization: -96.09 SS G_CDS: -3.92 Total: -100.00 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.06 Total: 43.41 kcal Atomic # 16 Polarization: 118.64 SS G_CDS: -0.26 Total: 118.38 kcal Total: -63.73 0.80 -62.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601312888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.325 kcal (2) G-P(sol) polarization free energy of solvation -63.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds