Wall clock time and date at job start Tue Mar 31 2020 14:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.44295 * 2 1 4 4 C 1.53035 * 109.46094 * 119.96283 * 2 1 3 5 5 C 1.53190 * 109.33827 * 58.67647 * 4 2 1 6 6 N 1.46923 * 108.77865 * 54.61770 * 5 4 2 7 7 S 1.65589 * 120.63403 * 126.36943 * 6 5 4 8 8 O 1.42101 * 106.40589 * 209.84650 * 7 6 5 9 9 O 1.42097 * 106.40573 * 342.77095 * 7 6 5 10 10 C 1.76199 * 107.21885 * 96.30897 * 7 6 5 11 11 C 1.37643 * 120.12901 * 116.85406 * 10 7 6 12 12 C 1.38610 * 120.24852 * 179.70088 * 11 10 7 13 13 C 1.38652 * 120.50096 * 0.59887 * 12 11 10 14 14 C 1.37603 * 120.25107 * 359.67779 * 13 12 11 15 15 C 1.40698 * 120.12848 * 297.12509 * 10 7 6 16 16 C 1.41390 * 120.24235 * 0.02562 * 15 10 7 17 17 H 1.07999 * 120.00265 * 329.50804 * 16 15 10 18 18 C 1.39950 * 119.99658 * 149.50086 * 16 15 10 19 19 N 1.30821 * 120.00338 * 350.08962 * 18 16 15 20 20 Si 1.86801 * 119.99807 * 170.09369 * 18 16 15 21 21 H 1.48500 * 109.47442 * 60.00214 * 20 18 16 22 22 H 1.48504 * 109.47276 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47293 * 300.00002 * 20 18 16 24 24 C 1.46935 * 118.73463 * 306.39108 * 6 5 4 25 25 C 1.53038 * 109.43342 * 240.02369 * 2 1 3 26 26 H 1.09001 * 109.47324 * 300.03330 * 1 2 3 27 27 H 1.09003 * 109.47485 * 60.03466 * 1 2 3 28 28 H 1.09002 * 109.46702 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46786 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47011 * 299.96404 * 3 2 1 31 31 H 1.08997 * 109.47272 * 59.96627 * 3 2 1 32 32 H 1.08998 * 109.50166 * 298.70857 * 4 2 1 33 33 H 1.09004 * 109.49691 * 178.64056 * 4 2 1 34 34 H 1.09001 * 109.59140 * 174.40761 * 5 4 2 35 35 H 1.09003 * 109.58602 * 294.82488 * 5 4 2 36 36 H 1.07996 * 119.87461 * 359.97438 * 11 10 7 37 37 H 1.07999 * 119.74873 * 180.29501 * 12 11 10 38 38 H 1.08004 * 119.88012 * 179.70280 * 13 12 11 39 39 H 1.07991 * 120.12902 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.58350 * 173.39318 * 24 6 5 42 42 H 1.08995 * 109.58556 * 293.67945 * 24 6 5 43 43 H 1.09002 * 109.46690 * 181.36037 * 25 2 1 44 44 H 1.08998 * 109.52619 * 61.29123 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0393 1.4428 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 1.5003 -2.1543 1.2646 6 7 1.8633 -2.8091 0.0005 7 16 2.6674 -4.2567 0.0005 8 8 3.4548 -4.2784 -1.1822 9 8 3.2159 -4.4111 1.3022 10 6 1.4582 -5.5250 -0.1835 11 6 1.4734 -6.3382 -1.2940 12 6 0.5272 -7.3407 -1.4383 13 6 -0.4516 -7.5286 -0.4744 14 6 -0.4894 -6.7239 0.6412 15 6 0.4700 -5.7069 0.8013 16 6 0.4408 -4.8736 1.9432 17 1 1.3591 -4.4615 2.3347 18 6 -0.7783 -4.5827 2.5660 19 7 -1.9038 -4.9160 1.9886 20 14 -0.7982 -3.7185 4.2220 21 1 -0.1341 -2.3960 4.0982 22 1 -2.2030 -3.5279 4.6641 23 1 -0.0733 -4.5449 5.2205 24 6 1.4996 -2.1548 -1.2639 25 6 2.0392 -0.7211 -1.2501 26 1 -0.3634 0.5143 0.8897 27 1 -0.3634 0.5133 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 3.1294 1.4433 0.0005 30 1 1.6763 1.9563 -0.8903 31 1 1.6753 1.9567 0.8896 32 1 1.6958 -0.1934 2.1398 33 1 3.1296 -0.7422 1.2386 34 1 1.9394 -2.7016 2.0988 35 1 0.4154 -2.1354 1.3681 36 1 2.2281 -6.1973 -2.0536 37 1 0.5495 -7.9771 -2.3106 38 1 -1.1869 -8.3098 -0.5993 39 1 -1.2524 -6.8723 1.3909 40 1 -2.7487 -4.7147 2.4205 41 1 1.9383 -2.7023 -2.0981 42 1 0.4147 -2.1382 -1.3678 43 1 3.1289 -0.7426 -1.2386 44 1 1.6950 -0.1943 -2.1401 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601335358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:18 Heat of formation + Delta-G solvation = -72.540174 kcal Electronic energy + Delta-G solvation = -27388.524750 eV Core-core repulsion = 23817.611698 eV Total energy + Delta-G solvation = -3570.913052 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.09236 -37.59520 -36.34722 -34.87735 -34.10671 -33.74497 -30.76562 -30.22161 -29.55432 -27.52265 -27.13384 -25.57065 -23.01932 -22.24509 -21.62599 -21.13172 -18.94809 -17.83355 -17.41035 -16.90135 -16.01741 -15.42188 -15.22436 -14.61111 -14.41955 -14.26489 -14.04552 -13.93704 -13.82485 -13.28671 -13.12661 -12.76367 -12.44454 -12.06737 -11.90946 -11.85540 -11.64505 -11.60853 -11.37766 -11.27545 -11.24328 -11.12180 -11.06155 -10.90283 -10.79330 -10.63245 -10.58023 -10.51208 -10.00525 -9.93660 -9.82611 -9.46550 -9.22085 -8.26807 -7.99924 -7.58761 -7.04666 -4.79282 1.52247 2.33956 2.71887 2.93411 2.97421 3.08509 3.73712 3.88217 4.38090 4.74763 4.85655 4.93396 4.98631 5.25937 5.33018 5.44301 5.60780 5.62426 5.74693 5.79031 5.80593 5.87098 5.94788 5.99841 6.02917 6.05467 6.14644 6.22932 6.24286 6.27417 6.37152 6.41860 6.48024 6.50841 6.72668 6.76395 6.84018 6.96445 7.05845 7.30355 7.34516 7.51263 7.68877 7.80018 7.92957 8.33041 8.50747 8.65075 9.88511 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.007419 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.284397 B = 3773.009685 C = 5162.890736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.125 4.125 5 C 0.126 3.874 6 N -0.989 5.989 7 S 2.705 3.295 8 O -0.997 6.997 9 O -0.976 6.976 10 C -0.774 4.774 11 C -0.005 4.005 12 C -0.247 4.247 13 C -0.078 4.078 14 C -0.156 4.156 15 C 0.193 3.807 16 C -0.475 4.475 17 H 0.110 0.890 18 C 0.083 3.917 19 N -0.781 5.781 20 Si 0.902 3.098 21 H -0.253 1.253 22 H -0.276 1.276 23 H -0.258 1.258 24 C 0.124 3.876 25 C -0.118 4.118 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.286 0.714 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 9.198 -1.752 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.164 4.164 5 C 0.001 3.999 6 N -0.824 5.824 7 S 2.804 3.196 8 O -0.987 6.987 9 O -0.966 6.966 10 C -0.869 4.869 11 C -0.025 4.025 12 C -0.267 4.267 13 C -0.097 4.097 14 C -0.176 4.176 15 C 0.189 3.811 16 C -0.503 4.503 17 H 0.128 0.872 18 C -0.138 4.138 19 N -0.404 5.404 20 Si 0.725 3.275 21 H -0.177 1.177 22 H -0.201 1.201 23 H -0.182 1.182 24 C -0.002 4.002 25 C -0.157 4.157 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.361 9.146 -1.634 9.390 hybrid contribution -1.086 -0.052 0.543 1.215 sum 0.275 9.094 -1.091 9.163 Atomic orbital electron populations 1.21993 0.94566 1.02874 1.01020 1.20480 0.95812 0.94564 0.95529 1.21864 1.00758 0.95683 1.01295 1.22025 1.00825 0.96389 0.97139 1.21548 1.00961 0.91884 0.85557 1.57473 1.76345 1.37668 1.10961 1.00938 0.73620 0.72568 0.72460 1.93429 1.68119 1.87197 1.50000 1.93460 1.77421 1.85845 1.39903 1.29950 1.26411 1.24208 1.06337 1.20245 0.95524 0.92904 0.93837 1.20502 1.00768 1.03961 1.01509 1.20915 0.96432 0.97645 0.94693 1.21520 1.01672 0.96005 0.98371 1.17004 0.87222 0.88226 0.88677 1.20373 0.95420 1.25484 1.09061 0.87209 1.25941 0.94788 0.94455 0.98621 1.69778 0.98983 1.34831 1.36838 0.86422 0.78486 0.81059 0.81485 1.17740 1.20054 1.18189 1.21297 1.00252 0.93110 0.85539 1.21916 1.00963 0.95619 0.97214 0.93041 0.93115 0.91175 0.92905 0.92955 0.92907 0.91333 0.91836 0.88634 0.90830 0.87501 0.88730 0.88849 0.85859 0.90250 0.89764 0.91499 0.91634 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.71 37.16 0.29 -1.57 16 2 C -0.06 -0.81 0.77 -154.47 -0.12 -0.93 16 3 C -0.14 -1.46 8.47 37.16 0.31 -1.15 16 4 C -0.12 -1.78 4.90 -26.62 -0.13 -1.92 16 5 C 0.13 2.22 4.30 -3.71 -0.02 2.21 16 6 N -0.99 -18.52 3.21 -113.51 -0.36 -18.89 16 7 S 2.70 59.91 5.09 -107.50 -0.55 59.36 16 8 O -1.00 -22.80 15.75 -57.17 -0.90 -23.70 16 9 O -0.98 -23.54 14.53 -57.17 -0.83 -24.37 16 10 C -0.77 -18.59 5.96 -38.87 -0.23 -18.82 16 11 C -0.01 -0.12 9.53 -39.66 -0.38 -0.50 16 12 C -0.25 -5.43 10.05 -39.29 -0.39 -5.83 16 13 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 14 C -0.16 -3.84 8.65 -38.87 -0.34 -4.17 16 15 C 0.19 4.86 5.53 -106.83 -0.59 4.27 16 16 C -0.48 -11.50 6.56 -37.74 -0.25 -11.74 16 17 H 0.11 2.66 3.93 -52.49 -0.21 2.45 16 18 C 0.08 1.87 5.26 -17.34 -0.09 1.78 16 19 N -0.78 -18.05 10.92 55.55 0.61 -17.44 16 20 Si 0.90 17.09 29.57 -169.99 -5.03 12.07 16 21 H -0.25 -4.52 7.11 56.52 0.40 -4.12 16 22 H -0.28 -5.07 7.11 56.52 0.40 -4.66 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 C 0.12 1.98 5.98 -3.70 -0.02 1.96 16 25 C -0.12 -1.56 4.90 -26.61 -0.13 -1.69 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.01 4.98 -51.93 -0.26 0.76 16 29 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.83 5.39 -51.93 -0.28 1.55 16 35 H 0.07 1.33 6.57 -51.93 -0.34 0.98 16 36 H 0.11 2.27 7.33 -52.49 -0.38 1.88 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.12 3.05 6.33 -52.49 -0.33 2.72 16 40 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 41 H 0.08 1.36 7.08 -51.93 -0.37 1.00 16 42 H 0.07 1.04 6.71 -51.93 -0.35 0.69 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -27.83 345.00 -10.65 -38.48 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.30 Total: 9.53 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: -2.48 Total: -40.24 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.24 Total: -36.33 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.73 Total: -48.07 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 59.91 SS G_CDS: -0.55 Total: 59.36 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.83 -10.65 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601335358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.060 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds