Wall clock time and date at job start Tue Mar 31 2020 14:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.44295 * 2 1 4 4 C 1.53035 * 109.46094 * 119.96283 * 2 1 3 5 5 C 1.53190 * 109.33827 * 58.67647 * 4 2 1 6 6 N 1.46923 * 108.77865 * 54.61770 * 5 4 2 7 7 S 1.65589 * 120.63403 * 126.36943 * 6 5 4 8 8 O 1.42101 * 106.40589 * 209.84650 * 7 6 5 9 9 O 1.42097 * 106.40573 * 342.77095 * 7 6 5 10 10 C 1.76199 * 107.21885 * 96.30897 * 7 6 5 11 11 C 1.37643 * 120.12901 * 116.85406 * 10 7 6 12 12 C 1.38610 * 120.24852 * 179.70088 * 11 10 7 13 13 C 1.38652 * 120.50096 * 0.59887 * 12 11 10 14 14 C 1.37603 * 120.25107 * 359.67779 * 13 12 11 15 15 C 1.40698 * 120.12848 * 297.12509 * 10 7 6 16 16 C 1.41390 * 120.24235 * 0.02562 * 15 10 7 17 17 H 1.07999 * 120.00265 * 329.50804 * 16 15 10 18 18 C 1.39950 * 119.99658 * 149.50086 * 16 15 10 19 19 N 1.30821 * 120.00338 * 350.08962 * 18 16 15 20 20 Si 1.86801 * 119.99807 * 170.09369 * 18 16 15 21 21 H 1.48500 * 109.47442 * 60.00214 * 20 18 16 22 22 H 1.48504 * 109.47276 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47293 * 300.00002 * 20 18 16 24 24 C 1.46935 * 118.73463 * 306.39108 * 6 5 4 25 25 C 1.53038 * 109.43342 * 240.02369 * 2 1 3 26 26 H 1.09001 * 109.47324 * 300.03330 * 1 2 3 27 27 H 1.09003 * 109.47485 * 60.03466 * 1 2 3 28 28 H 1.09002 * 109.46702 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46786 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47011 * 299.96404 * 3 2 1 31 31 H 1.08997 * 109.47272 * 59.96627 * 3 2 1 32 32 H 1.08998 * 109.50166 * 298.70857 * 4 2 1 33 33 H 1.09004 * 109.49691 * 178.64056 * 4 2 1 34 34 H 1.09001 * 109.59140 * 174.40761 * 5 4 2 35 35 H 1.09003 * 109.58602 * 294.82488 * 5 4 2 36 36 H 1.07996 * 119.87461 * 359.97438 * 11 10 7 37 37 H 1.07999 * 119.74873 * 180.29501 * 12 11 10 38 38 H 1.08004 * 119.88012 * 179.70280 * 13 12 11 39 39 H 1.07991 * 120.12902 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.58350 * 173.39318 * 24 6 5 42 42 H 1.08995 * 109.58556 * 293.67945 * 24 6 5 43 43 H 1.09002 * 109.46690 * 181.36037 * 25 2 1 44 44 H 1.08998 * 109.52619 * 61.29123 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0393 1.4428 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 1.5003 -2.1543 1.2646 6 7 1.8633 -2.8091 0.0005 7 16 2.6674 -4.2567 0.0005 8 8 3.4548 -4.2784 -1.1822 9 8 3.2159 -4.4111 1.3022 10 6 1.4582 -5.5250 -0.1835 11 6 1.4734 -6.3382 -1.2940 12 6 0.5272 -7.3407 -1.4383 13 6 -0.4516 -7.5286 -0.4744 14 6 -0.4894 -6.7239 0.6412 15 6 0.4700 -5.7069 0.8013 16 6 0.4408 -4.8736 1.9432 17 1 1.3591 -4.4615 2.3347 18 6 -0.7783 -4.5827 2.5660 19 7 -1.9038 -4.9160 1.9886 20 14 -0.7982 -3.7185 4.2220 21 1 -0.1341 -2.3960 4.0982 22 1 -2.2030 -3.5279 4.6641 23 1 -0.0733 -4.5449 5.2205 24 6 1.4996 -2.1548 -1.2639 25 6 2.0392 -0.7211 -1.2501 26 1 -0.3634 0.5143 0.8897 27 1 -0.3634 0.5133 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 3.1294 1.4433 0.0005 30 1 1.6763 1.9563 -0.8903 31 1 1.6753 1.9567 0.8896 32 1 1.6958 -0.1934 2.1398 33 1 3.1296 -0.7422 1.2386 34 1 1.9394 -2.7016 2.0988 35 1 0.4154 -2.1354 1.3681 36 1 2.2281 -6.1973 -2.0536 37 1 0.5495 -7.9771 -2.3106 38 1 -1.1869 -8.3098 -0.5993 39 1 -1.2524 -6.8723 1.3909 40 1 -2.7487 -4.7147 2.4205 41 1 1.9383 -2.7023 -2.0981 42 1 0.4147 -2.1382 -1.3678 43 1 3.1289 -0.7426 -1.2386 44 1 1.6950 -0.1943 -2.1401 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601335358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:18 Heat of formation + Delta-G solvation = -87.698946 kcal Electronic energy + Delta-G solvation = -27389.182084 eV Core-core repulsion = 23817.611698 eV Total energy + Delta-G solvation = -3571.570385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.26028 -39.37682 -38.15597 -36.70282 -35.72289 -35.14911 -32.07987 -31.93948 -31.35258 -28.62465 -28.09627 -27.35447 -24.26056 -23.55238 -23.36565 -22.90726 -20.33385 -19.55023 -19.06038 -18.31172 -17.76984 -17.11300 -16.83734 -16.05450 -15.77226 -15.50552 -15.39054 -15.26706 -15.03030 -14.97401 -14.81367 -14.44885 -13.82671 -13.70460 -13.27996 -13.10110 -13.03985 -12.96911 -12.92040 -12.82735 -12.67815 -12.66754 -12.56981 -12.42533 -12.16465 -12.05090 -11.99039 -11.66288 -11.65755 -11.17033 -11.12902 -11.07713 -10.96212 -9.87592 -9.63138 -9.41136 -8.76976 -6.61527 -0.18511 0.53424 0.97338 1.37673 1.47298 1.50315 2.15687 2.27221 2.63163 3.00057 3.48193 3.66544 3.82220 3.87247 3.93338 4.21546 4.29669 4.33655 4.48413 4.51572 4.54644 4.68920 4.71934 4.78054 4.88018 4.92006 4.93123 4.97158 5.01039 5.09412 5.12089 5.18500 5.22804 5.29121 5.29954 5.38199 5.43755 5.53953 5.58457 5.66756 5.69765 5.83983 5.92786 5.99333 6.13249 6.51034 6.71515 6.83705 8.18619 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.007419 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.284397 B = 3773.009685 C = 5162.890736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.133 4.133 4 C -0.122 4.122 5 C 0.123 3.877 6 N -0.984 5.984 7 S 2.717 3.283 8 O -1.007 7.007 9 O -1.001 7.001 10 C -0.796 4.796 11 C -0.020 4.020 12 C -0.250 4.250 13 C -0.078 4.078 14 C -0.184 4.184 15 C 0.166 3.834 16 C -0.492 4.492 17 H 0.103 0.897 18 C 0.055 3.945 19 N -0.802 5.802 20 Si 0.951 3.049 21 H -0.236 1.236 22 H -0.262 1.262 23 H -0.265 1.265 24 C 0.115 3.885 25 C -0.114 4.114 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.295 0.705 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 11.183 -2.098 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 C -0.190 4.190 4 C -0.162 4.162 5 C -0.002 4.002 6 N -0.822 5.822 7 S 2.815 3.185 8 O -0.998 6.998 9 O -0.992 6.992 10 C -0.889 4.889 11 C -0.039 4.039 12 C -0.270 4.270 13 C -0.097 4.097 14 C -0.203 4.203 15 C 0.162 3.838 16 C -0.520 4.520 17 H 0.121 0.879 18 C -0.164 4.164 19 N -0.426 5.426 20 Si 0.771 3.229 21 H -0.159 1.159 22 H -0.186 1.186 23 H -0.190 1.190 24 C -0.010 4.010 25 C -0.153 4.153 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.946 11.114 -2.002 11.333 hybrid contribution -0.987 -0.722 0.584 1.356 sum -0.041 10.392 -1.418 10.489 Atomic orbital electron populations 1.21959 0.94415 1.01576 1.02247 1.20495 0.95879 0.95796 0.94092 1.21799 1.00915 0.93814 1.02460 1.22044 1.00776 0.94249 0.99084 1.21599 1.00562 0.93662 0.84375 1.57267 1.76138 1.36356 1.12482 1.00442 0.73472 0.72941 0.71626 1.93400 1.68610 1.87610 1.50193 1.93414 1.78203 1.86504 1.41077 1.30293 1.26555 1.25487 1.06575 1.20567 0.96262 0.93151 0.93964 1.20888 0.99963 1.03801 1.02315 1.21253 0.96914 0.97627 0.93865 1.21575 1.02166 0.97164 0.99433 1.17326 0.88007 0.88934 0.89541 1.20452 0.95937 1.26058 1.09578 0.87890 1.26576 0.93959 0.94670 1.01207 1.69803 0.99591 1.35106 1.38053 0.85683 0.79190 0.80760 0.77266 1.15880 1.18608 1.18957 1.21552 1.00622 0.94767 0.84016 1.21931 1.00759 0.93728 0.98876 0.92267 0.91493 0.93671 0.92656 0.91551 0.92046 0.89575 0.91848 0.90647 0.91503 0.86234 0.85529 0.85999 0.86853 0.89424 0.90303 0.91243 0.91871 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 7.71 71.98 0.56 -2.75 16 2 C -0.06 -1.43 0.77 -52.15 -0.04 -1.47 16 3 C -0.13 -2.32 8.47 71.98 0.61 -1.71 16 4 C -0.12 -3.31 4.90 30.67 0.15 -3.16 16 5 C 0.12 4.35 4.30 86.36 0.37 4.72 16 6 N -0.98 -37.19 3.21 -513.05 -1.65 -38.84 16 7 S 2.72 123.05 5.09 -56.49 -0.29 122.76 16 8 O -1.01 -46.57 15.75 -128.00 -2.02 -48.59 16 9 O -1.00 -49.89 14.53 -128.00 -1.86 -51.75 16 10 C -0.80 -39.09 5.96 22.73 0.14 -38.95 16 11 C -0.02 -0.91 9.53 22.22 0.21 -0.70 16 12 C -0.25 -10.75 10.05 22.46 0.23 -10.52 16 13 C -0.08 -3.47 10.02 22.22 0.22 -3.25 16 14 C -0.18 -9.22 8.65 22.73 0.20 -9.03 16 15 C 0.17 8.62 5.53 -21.29 -0.12 8.50 16 16 C -0.49 -24.52 6.56 23.46 0.15 -24.37 16 17 H 0.10 5.18 3.93 -2.91 -0.01 5.17 16 18 C 0.05 2.51 5.26 85.26 0.45 2.96 16 19 N -0.80 -37.52 10.92 21.83 0.24 -37.28 16 20 Si 0.95 34.63 29.57 68.60 2.03 36.66 16 21 H -0.24 -7.84 7.11 99.48 0.71 -7.14 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 23 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 24 C 0.12 3.63 5.98 86.36 0.52 4.15 16 25 C -0.11 -2.78 4.90 30.67 0.15 -2.63 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.26 4.98 -2.39 -0.01 1.24 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.08 2.96 5.39 -2.39 -0.01 2.94 16 35 H 0.07 2.43 6.57 -2.39 -0.02 2.41 16 36 H 0.12 5.06 7.33 -2.91 -0.02 5.04 16 37 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.11 5.79 6.33 -2.92 -0.02 5.77 16 40 H 0.29 12.43 8.30 -92.71 -0.77 11.66 16 41 H 0.08 2.54 7.08 -2.39 -0.02 2.52 16 42 H 0.07 2.13 6.71 -2.39 -0.02 2.12 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -60.61 345.00 1.25 -59.35 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 1.01 Total: 35.89 kcal Atomic # 6 Polarization: -81.99 SS G_CDS: 3.79 Total: -78.20 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.41 Total: -76.12 kcal Atomic # 8 Polarization: -96.46 SS G_CDS: -3.88 Total: -100.34 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: 123.05 SS G_CDS: -0.29 Total: 122.76 kcal Total: -60.61 1.25 -59.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601335358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.345 kcal (2) G-P(sol) polarization free energy of solvation -60.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds