Wall clock time and date at job start Tue Mar 31 2020 13:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.05422 * 2 1 4 4 N 1.46497 * 109.47108 * 58.58626 * 3 2 1 5 5 S 1.65594 * 120.00303 * 165.98480 * 4 3 2 6 6 O 1.42098 * 106.40948 * 176.33778 * 5 4 3 7 7 O 1.42103 * 106.39958 * 309.25838 * 5 4 3 8 8 C 1.76202 * 107.21964 * 62.79477 * 5 4 3 9 9 C 1.37638 * 120.12770 * 245.80350 * 8 5 4 10 10 C 1.38618 * 120.24850 * 180.02562 * 9 8 5 11 11 C 1.38657 * 120.49759 * 359.97438 * 10 9 8 12 12 C 1.37596 * 120.24956 * 0.02562 * 11 10 9 13 13 C 1.40694 * 120.12713 * 65.52439 * 8 5 4 14 14 C 1.41400 * 120.24441 * 0.02562 * 13 8 5 15 15 H 1.08000 * 119.99701 * 331.45236 * 14 13 8 16 16 C 1.39944 * 120.00033 * 151.45043 * 14 13 8 17 17 N 1.30821 * 120.00281 * 348.31394 * 16 14 13 18 18 Si 1.86798 * 119.99787 * 168.31824 * 16 14 13 19 19 H 1.48503 * 109.47225 * 59.99915 * 18 16 14 20 20 H 1.48505 * 109.47304 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47419 * 299.99830 * 18 16 14 22 22 C 1.53874 * 110.03218 * 238.58423 * 2 1 3 23 23 C 1.54268 * 106.64118 * 240.68988 * 22 2 1 24 24 C 1.55006 * 104.13523 * 23.62351 * 23 22 2 25 25 C 1.54260 * 110.03340 * 121.41849 * 2 1 3 26 26 H 1.09007 * 109.46950 * 181.41787 * 1 2 3 27 27 H 1.08998 * 109.46965 * 301.41433 * 1 2 3 28 28 H 1.08994 * 109.47543 * 61.41479 * 1 2 3 29 29 H 1.08998 * 109.46818 * 178.58611 * 3 2 1 30 30 H 1.08995 * 109.47137 * 298.58678 * 3 2 1 31 31 H 0.97002 * 120.00021 * 345.97623 * 4 3 2 32 32 H 1.08000 * 119.87691 * 359.97438 * 9 8 5 33 33 H 1.07998 * 119.74978 * 179.97438 * 10 9 8 34 34 H 1.08004 * 119.87193 * 180.02562 * 11 10 9 35 35 H 1.08007 * 120.12418 * 179.97438 * 12 11 10 36 36 H 0.96993 * 120.00150 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.03269 * 359.97438 * 22 2 1 38 38 H 1.08999 * 110.03197 * 121.37497 * 22 2 1 39 39 H 1.08998 * 110.48142 * 142.31409 * 23 22 2 40 40 H 1.08997 * 110.48326 * 264.95419 * 23 22 2 41 41 H 1.09001 * 110.74572 * 203.73762 * 24 23 22 42 42 H 1.08997 * 110.92361 * 80.44397 * 24 23 22 43 43 H 1.09002 * 110.48573 * 214.35369 * 25 2 1 44 44 H 1.09000 * 110.48767 * 336.86272 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 7 1.5459 2.1428 1.1787 5 16 2.2136 3.5893 1.6302 6 8 1.4557 4.0525 2.7394 7 8 3.6189 3.3843 1.6804 8 6 1.9238 4.7296 0.3186 9 6 2.9808 5.2348 -0.4039 10 6 2.7557 6.1325 -1.4359 11 6 1.4661 6.5312 -1.7529 12 6 0.3944 6.0391 -1.0441 13 6 0.6105 5.1227 0.0019 14 6 -0.4836 4.6062 0.7336 15 1 -0.4166 3.6282 1.1868 16 6 -1.6532 5.3623 0.8707 17 7 -1.6604 6.6243 0.5262 18 14 -3.2041 4.5695 1.5457 19 1 -2.9435 4.0602 2.9161 20 1 -4.2950 5.5761 1.5915 21 1 -3.6066 3.4422 0.6669 22 6 2.0571 -0.7535 -1.2337 23 6 2.8882 -1.9406 -0.7046 24 6 2.3281 -2.1902 0.7190 25 6 2.0585 -0.7555 1.2368 26 1 -0.3633 -1.0274 0.0254 27 1 -0.3633 0.5356 0.8770 28 1 -0.3634 0.4917 -0.9023 29 1 3.1443 1.4262 0.0254 30 1 1.7174 1.9471 -0.9023 31 1 0.8177 1.7627 1.6947 32 1 3.9894 4.9314 -0.1652 33 1 3.5911 6.5241 -1.9972 34 1 1.3023 7.2308 -2.5593 35 1 -0.6093 6.3514 -1.2925 36 1 -2.4712 7.1483 0.6208 37 1 1.2229 -1.1196 -1.8322 38 1 2.6859 -0.0950 -1.8330 39 1 2.7411 -2.8192 -1.3327 40 1 3.9446 -1.6761 -0.6584 41 1 3.0676 -2.6931 1.3422 42 1 1.4037 -2.7662 0.6781 43 1 2.9811 -0.3001 1.5966 44 1 1.3070 -0.7676 2.0263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601340594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:25 Heat of formation + Delta-G solvation = -83.503784 kcal Electronic energy + Delta-G solvation = -26494.758471 eV Core-core repulsion = 22923.370002 eV Total energy + Delta-G solvation = -3571.388469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.16572 -37.57613 -36.17109 -34.78975 -34.41469 -33.85698 -30.60970 -30.18228 -29.53698 -28.74037 -26.31616 -25.51601 -23.77224 -21.64878 -21.12430 -20.72768 -18.81365 -18.44517 -17.69257 -16.78548 -16.38517 -15.74293 -15.42107 -15.03889 -14.61734 -14.39150 -14.08176 -13.80709 -13.58886 -13.27174 -13.13505 -12.91848 -12.74101 -12.36958 -11.91323 -11.74994 -11.52889 -11.34441 -11.28177 -11.14163 -11.12065 -11.06180 -11.03058 -10.98300 -10.72061 -10.63727 -10.52891 -10.51046 -10.46381 -10.23906 -9.90382 -9.42932 -9.38250 -8.70086 -8.02140 -7.59196 -7.01911 -4.74900 1.58593 2.35571 2.74706 2.95893 2.98731 3.12720 3.77501 3.99415 4.41918 4.56411 4.60372 4.69335 4.79980 5.22915 5.29894 5.35651 5.39100 5.42498 5.53473 5.66199 5.67884 5.82303 5.84569 5.89094 5.94391 5.99069 6.05729 6.06782 6.14049 6.23370 6.25967 6.33656 6.35666 6.41681 6.49507 6.56310 6.78968 6.96744 7.10151 7.32094 7.50147 7.59014 7.70037 7.82041 7.90566 8.29947 8.51175 8.66287 9.90938 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.005478 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.960068 B = 5110.356699 C = 6078.558626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C 0.137 3.863 4 N -1.120 6.120 5 S 2.700 3.300 6 O -0.966 6.966 7 O -1.000 7.000 8 C -0.774 4.774 9 C -0.004 4.004 10 C -0.251 4.251 11 C -0.077 4.077 12 C -0.158 4.158 13 C 0.187 3.813 14 C -0.444 4.444 15 H 0.087 0.913 16 C 0.081 3.919 17 N -0.777 5.777 18 Si 0.912 3.088 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.117 4.117 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.409 0.591 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.288 0.712 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -12.688 -3.063 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C 0.010 3.990 4 N -0.878 5.878 5 S 2.797 3.203 6 O -0.956 6.956 7 O -0.990 6.990 8 C -0.869 4.869 9 C -0.023 4.023 10 C -0.271 4.271 11 C -0.096 4.096 12 C -0.178 4.178 13 C 0.182 3.818 14 C -0.472 4.472 15 H 0.105 0.895 16 C -0.140 4.140 17 N -0.400 5.400 18 Si 0.735 3.265 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.153 4.153 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.244 0.756 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.868 -12.255 -2.344 12.616 hybrid contribution -1.306 0.079 -0.280 1.338 sum 0.562 -12.176 -2.625 12.468 Atomic orbital electron populations 1.21909 0.93899 1.01223 1.02657 1.21357 0.96116 0.94203 0.95436 1.21275 0.98292 0.91442 0.88005 1.55665 1.51845 1.40067 1.40222 1.01070 0.72291 0.72507 0.74394 1.93543 1.71795 1.79650 1.50660 1.93441 1.31885 1.86048 1.87617 1.29875 1.00143 1.29356 1.27575 1.20256 0.96127 0.93419 0.92546 1.20485 0.96007 1.06835 1.03772 1.20901 0.93471 0.97459 0.97784 1.21516 0.98245 1.01280 0.96769 1.16991 0.89096 0.87656 0.88041 1.19806 0.97311 1.03404 1.26705 0.89529 1.25938 1.00621 0.94274 0.93197 1.69769 1.29905 1.06633 1.33742 0.86261 0.79283 0.80003 0.80906 1.18059 1.19922 1.18365 1.22227 0.99584 0.96713 0.96802 1.22369 0.99648 0.97827 0.96312 1.22501 1.00448 0.96992 0.96235 1.22499 1.01429 0.94686 0.96832 0.92809 0.92241 0.92068 0.90966 0.91698 0.75627 0.87480 0.88797 0.88874 0.85734 0.90122 0.91474 0.91338 0.92036 0.91620 0.91936 0.91783 0.90979 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.98 37.16 0.30 -1.36 16 2 C -0.07 -0.84 0.68 -153.39 -0.10 -0.94 16 3 C 0.14 2.05 4.72 -4.04 -0.02 2.03 16 4 N -1.12 -19.33 4.70 -10.62 -0.05 -19.38 16 5 S 2.70 59.08 4.96 -107.50 -0.53 58.55 16 6 O -0.97 -24.16 16.52 -57.17 -0.94 -25.10 16 7 O -1.00 -22.81 16.53 -57.17 -0.94 -23.76 16 8 C -0.77 -18.49 5.90 -38.87 -0.23 -18.72 16 9 C 0.00 -0.08 9.54 -39.66 -0.38 -0.46 16 10 C -0.25 -5.49 10.05 -39.29 -0.39 -5.88 16 11 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 12 C -0.16 -3.90 8.66 -38.88 -0.34 -4.24 16 13 C 0.19 4.73 5.55 -106.83 -0.59 4.14 16 14 C -0.44 -11.03 7.63 -37.74 -0.29 -11.32 16 15 H 0.09 2.00 5.82 -52.49 -0.31 1.69 16 16 C 0.08 1.93 5.24 -17.34 -0.09 1.84 16 17 N -0.78 -19.09 10.86 55.55 0.60 -18.48 16 18 Si 0.91 17.87 29.57 -169.99 -5.03 12.84 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 22 C -0.12 -1.20 6.11 -25.61 -0.16 -1.36 16 23 C -0.12 -1.16 6.84 -25.01 -0.17 -1.34 16 24 C -0.12 -1.19 6.91 -24.67 -0.17 -1.36 16 25 C -0.12 -1.34 5.57 -25.07 -0.14 -1.48 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.74 6.55 -51.93 -0.34 0.40 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.09 7.80 -51.93 -0.40 0.68 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.41 6.40 6.82 -34.46 -0.23 6.17 16 32 H 0.11 2.26 7.32 -52.49 -0.38 1.88 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.12 3.10 6.22 -52.48 -0.33 2.77 16 36 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 37 H 0.07 0.65 7.67 -51.93 -0.40 0.26 16 38 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 44 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -29.85 358.80 -11.21 -41.05 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.55 Total: 11.45 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: -3.17 Total: -42.58 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.55 Total: -37.87 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -1.89 Total: -48.86 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 59.08 SS G_CDS: -0.53 Total: 58.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.85 -11.21 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601340594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.450 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds