Wall clock time and date at job start Tue Mar 31 2020 14:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.52778 * 2 1 4 4 C 1.53039 * 109.49491 * 120.08214 * 2 1 3 5 5 C 1.53046 * 109.54096 * 58.58411 * 4 2 1 6 6 C 1.53190 * 109.31217 * 61.36444 * 5 4 2 7 7 N 1.46929 * 108.77349 * 305.36523 * 6 5 4 8 8 S 1.65604 * 120.63052 * 233.60570 * 7 6 5 9 9 O 1.42102 * 106.40357 * 209.40472 * 8 7 6 10 10 O 1.42102 * 106.40179 * 342.32517 * 8 7 6 11 11 C 1.76199 * 107.21396 * 95.86679 * 8 7 6 12 12 C 1.37639 * 120.12926 * 113.60205 * 11 8 7 13 13 C 1.38611 * 120.25117 * 179.69654 * 12 11 8 14 14 C 1.38664 * 120.49717 * 0.59959 * 13 12 11 15 15 C 1.37597 * 120.24772 * 359.67419 * 14 13 12 16 16 C 1.40694 * 120.12789 * 293.86966 * 11 8 7 17 17 C 1.41397 * 120.24616 * 0.02660 * 16 11 8 18 18 H 1.08004 * 119.99917 * 333.84754 * 17 16 11 19 19 C 1.39943 * 120.00181 * 153.84857 * 17 16 11 20 20 N 1.30821 * 119.99993 * 344.37090 * 19 17 16 21 21 Si 1.86805 * 119.99973 * 164.36725 * 19 17 16 22 22 H 1.48503 * 109.46761 * 89.99948 * 21 19 17 23 23 H 1.48503 * 109.47160 * 209.99868 * 21 19 17 24 24 H 1.48496 * 109.47085 * 330.00227 * 21 19 17 25 25 C 1.46924 * 118.73797 * 53.61057 * 7 6 5 26 26 H 1.09002 * 109.47299 * 299.92538 * 1 2 3 27 27 H 1.09002 * 109.47106 * 59.91543 * 1 2 3 28 28 H 1.08997 * 109.47498 * 179.91682 * 1 2 3 29 29 H 1.08996 * 109.47283 * 180.08301 * 3 2 1 30 30 H 1.09004 * 109.47317 * 300.08276 * 3 2 1 31 31 H 1.08998 * 109.47116 * 60.07648 * 3 2 1 32 32 H 1.08999 * 109.45954 * 178.60297 * 4 2 1 33 33 H 1.09001 * 109.45926 * 298.56157 * 4 2 1 34 34 H 1.09000 * 109.50042 * 181.31778 * 5 4 2 35 35 H 1.09005 * 109.49554 * 301.38165 * 5 4 2 36 36 H 1.09000 * 109.58803 * 65.14998 * 6 5 4 37 37 H 1.08999 * 109.58976 * 185.43874 * 6 5 4 38 38 H 1.08007 * 119.87312 * 359.97438 * 12 11 8 39 39 H 1.08001 * 119.75600 * 180.29598 * 13 12 11 40 40 H 1.08001 * 119.87318 * 179.70147 * 14 13 12 41 41 H 1.08007 * 120.12329 * 179.97438 * 15 14 13 42 42 H 0.97006 * 119.99833 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.58768 * 186.60012 * 25 7 6 44 44 H 1.09005 * 109.58669 * 66.17983 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5029 -2.1558 1.2660 6 6 2.0139 -2.9041 0.0308 7 7 1.6514 -2.1382 -1.1695 8 16 0.8194 -2.8555 -2.4087 9 8 1.2092 -2.1810 -3.5972 10 8 0.9616 -4.2579 -2.2287 11 6 -0.8882 -2.4936 -2.1686 12 6 -1.5573 -1.6917 -3.0651 13 6 -2.9022 -1.4105 -2.8821 14 6 -3.5857 -1.9220 -1.7894 15 6 -2.9356 -2.7213 -0.8773 16 6 -1.5718 -3.0185 -1.0565 17 6 -0.8933 -3.8384 -0.1254 18 1 -0.0287 -4.4064 -0.4356 19 6 -1.3423 -3.9139 1.1979 20 7 -2.1779 -3.0183 1.6572 21 14 -0.7483 -5.2936 2.3084 22 1 0.4863 -4.8648 3.0134 23 1 -1.8013 -5.6149 3.3051 24 1 -0.4578 -6.4978 1.4895 25 6 2.0412 -0.7239 -1.2495 26 1 -0.3634 0.5127 0.8907 27 1 -0.3633 0.5152 -0.8892 28 1 -0.3634 -1.0276 -0.0015 29 1 3.1314 1.4409 -0.0015 30 1 1.6774 1.9566 -0.8893 31 1 1.6797 1.9557 0.8907 32 1 3.1305 -0.7445 1.2353 33 1 1.6987 -0.1958 2.1389 34 1 1.8479 -2.6629 2.1671 35 1 0.4131 -2.1355 1.2547 36 1 3.0978 -3.0044 0.0868 37 1 1.5572 -3.8929 -0.0124 38 1 -1.0334 -1.2837 -3.9170 39 1 -3.4204 -0.7842 -3.5931 40 1 -4.6323 -1.6925 -1.6540 41 1 -3.4699 -3.1183 -0.0268 42 1 -2.4888 -3.0705 2.5746 43 1 1.6007 -0.2732 -2.1388 44 1 3.1275 -0.6464 -1.2980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601342416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:51 Heat of formation + Delta-G solvation = -68.806329 kcal Electronic energy + Delta-G solvation = -28276.983645 eV Core-core repulsion = 24706.232505 eV Total energy + Delta-G solvation = -3570.751140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.91882 -37.57371 -36.37079 -34.87884 -34.04712 -33.49467 -31.30580 -30.25839 -29.54236 -26.76197 -26.40528 -25.49062 -24.03214 -21.76279 -21.41032 -21.10916 -18.45133 -17.81869 -17.67139 -17.08467 -15.95177 -15.47089 -15.20074 -14.48457 -14.42292 -14.20057 -13.92899 -13.70253 -13.27720 -13.19633 -12.96924 -12.77948 -12.56590 -12.05552 -11.96887 -11.76271 -11.43652 -11.35248 -11.26839 -11.22137 -11.14616 -11.09105 -11.06575 -10.69943 -10.63729 -10.60744 -10.50740 -10.16611 -9.90852 -9.87271 -9.65595 -9.36169 -9.15341 -8.26457 -7.98166 -7.61917 -7.11296 -4.78489 1.52641 2.35045 2.70202 2.93308 2.99084 3.09108 3.72323 3.88927 4.34769 4.76649 5.00036 5.16827 5.19254 5.33272 5.46283 5.57463 5.69417 5.77123 5.80332 5.95454 5.99808 6.05078 6.08782 6.12464 6.22671 6.25992 6.28281 6.32483 6.41712 6.49453 6.50865 6.60360 6.69863 6.75224 6.91562 6.96373 6.99782 7.06814 7.30754 7.33110 7.35242 7.52901 7.68226 7.81894 7.93854 8.33586 8.48066 8.65117 9.80628 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.008927 C = 0.007128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.083404 B = 3135.925145 C = 3927.048056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.099 4.099 5 C -0.149 4.149 6 C 0.127 3.873 7 N -0.990 5.990 8 S 2.700 3.300 9 O -0.997 6.997 10 O -0.975 6.975 11 C -0.774 4.774 12 C 0.000 4.000 13 C -0.250 4.250 14 C -0.076 4.076 15 C -0.161 4.161 16 C 0.195 3.805 17 C -0.471 4.471 18 H 0.115 0.885 19 C 0.087 3.913 20 N -0.770 5.770 21 Si 0.894 3.106 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.252 1.252 25 C 0.140 3.860 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.287 0.713 43 H 0.081 0.919 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 4.399 3.033 7.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.196 4.196 4 C -0.136 4.136 5 C -0.187 4.187 6 C 0.002 3.998 7 N -0.825 5.825 8 S 2.799 3.201 9 O -0.988 6.988 10 O -0.966 6.966 11 C -0.870 4.870 12 C -0.020 4.020 13 C -0.270 4.270 14 C -0.095 4.095 15 C -0.180 4.180 16 C 0.190 3.810 17 C -0.499 4.499 18 H 0.132 0.868 19 C -0.135 4.135 20 N -0.393 5.393 21 Si 0.717 3.283 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.175 1.175 25 C 0.014 3.986 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.452 3.964 2.570 7.214 hybrid contribution -0.646 -0.027 1.041 1.225 sum 4.806 3.937 3.611 7.186 Atomic orbital electron populations 1.22026 0.92927 1.05273 1.00332 1.20885 0.97281 0.94239 0.95575 1.21820 1.00337 0.95810 1.01655 1.21465 0.99266 0.96158 0.96733 1.22138 1.04921 0.94832 0.96834 1.21429 0.98563 0.95839 0.83985 1.57598 1.71680 1.19012 1.34239 1.01120 0.74359 0.72984 0.71636 1.93433 1.83556 1.76321 1.45476 1.93463 1.87241 1.30173 1.85689 1.29804 1.22101 1.22807 1.12251 1.20204 0.94289 0.92389 0.95120 1.20455 0.95293 1.09869 1.01429 1.20876 0.97623 0.96555 0.94407 1.21490 0.94808 1.02039 0.99711 1.16913 0.91100 0.85613 0.87389 1.20513 1.13469 1.22401 0.93489 0.86796 1.25921 0.93161 0.95417 0.99020 1.69811 1.23185 1.29232 1.17058 0.86495 0.79851 0.82286 0.79716 1.18329 1.19795 1.17503 1.21302 0.99065 0.80345 0.97857 0.93773 0.93559 0.88571 0.93059 0.92705 0.92776 0.92878 0.92612 0.92353 0.87678 0.92966 0.88230 0.87711 0.88954 0.89075 0.85923 0.90180 0.90055 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 7.99 37.16 0.30 -2.35 16 2 C -0.08 -1.18 0.77 -154.39 -0.12 -1.30 16 3 C -0.14 -1.72 8.48 37.15 0.32 -1.40 16 4 C -0.10 -1.44 4.71 -26.69 -0.13 -1.56 16 5 C -0.15 -2.48 5.57 -26.61 -0.15 -2.63 16 6 C 0.13 2.22 5.46 -3.71 -0.02 2.20 16 7 N -0.99 -18.44 2.71 -113.52 -0.31 -18.75 16 8 S 2.70 59.30 5.09 -107.50 -0.55 58.75 16 9 O -1.00 -22.90 15.89 -57.17 -0.91 -23.80 16 10 O -0.98 -23.42 14.50 -57.17 -0.83 -24.25 16 11 C -0.77 -17.85 5.30 -38.87 -0.21 -18.05 16 12 C 0.00 0.00 9.53 -39.66 -0.38 -0.38 16 13 C -0.25 -5.35 10.05 -39.29 -0.39 -5.74 16 14 C -0.08 -1.65 10.02 -39.66 -0.40 -2.05 16 15 C -0.16 -3.78 8.68 -38.87 -0.34 -4.12 16 16 C 0.19 4.64 4.32 -106.83 -0.46 4.18 16 17 C -0.47 -10.88 5.82 -37.74 -0.22 -11.10 16 18 H 0.11 2.69 3.53 -52.48 -0.19 2.50 16 19 C 0.09 1.86 3.86 -17.34 -0.07 1.79 16 20 N -0.77 -16.68 10.94 55.55 0.61 -16.07 16 21 Si 0.89 16.68 29.59 -169.99 -5.03 11.65 16 22 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 24 H -0.25 -4.88 7.11 56.52 0.40 -4.48 16 25 C 0.14 2.28 5.04 -3.71 -0.02 2.26 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.97 3.85 -51.93 -0.20 1.77 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 2.02 3.88 -51.93 -0.20 1.82 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.90 4.77 -51.93 -0.25 1.65 16 38 H 0.10 2.19 7.32 -52.48 -0.38 1.81 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.12 2.92 6.20 -52.48 -0.33 2.59 16 42 H 0.29 5.70 8.30 -40.82 -0.34 5.36 16 43 H 0.08 1.36 7.30 -51.93 -0.38 0.98 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -26.19 338.32 -10.33 -36.52 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.13 Total: 11.11 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: -2.28 Total: -40.26 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.30 Total: -34.82 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.74 Total: -48.05 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Atomic # 16 Polarization: 59.30 SS G_CDS: -0.55 Total: 58.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.19 -10.33 -36.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.285 kcal (2) G-P(sol) polarization free energy of solvation -26.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds