Wall clock time and date at job start Tue Mar 31 2020 14:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.52778 * 2 1 4 4 C 1.53039 * 109.49491 * 120.08214 * 2 1 3 5 5 C 1.53046 * 109.54096 * 58.58411 * 4 2 1 6 6 C 1.53190 * 109.31217 * 61.36444 * 5 4 2 7 7 N 1.46929 * 108.77349 * 305.36523 * 6 5 4 8 8 S 1.65604 * 120.63052 * 233.60570 * 7 6 5 9 9 O 1.42102 * 106.40357 * 209.40472 * 8 7 6 10 10 O 1.42102 * 106.40179 * 342.32517 * 8 7 6 11 11 C 1.76199 * 107.21396 * 95.86679 * 8 7 6 12 12 C 1.37639 * 120.12926 * 113.60205 * 11 8 7 13 13 C 1.38611 * 120.25117 * 179.69654 * 12 11 8 14 14 C 1.38664 * 120.49717 * 0.59959 * 13 12 11 15 15 C 1.37597 * 120.24772 * 359.67419 * 14 13 12 16 16 C 1.40694 * 120.12789 * 293.86966 * 11 8 7 17 17 C 1.41397 * 120.24616 * 0.02660 * 16 11 8 18 18 H 1.08004 * 119.99917 * 333.84754 * 17 16 11 19 19 C 1.39943 * 120.00181 * 153.84857 * 17 16 11 20 20 N 1.30821 * 119.99993 * 344.37090 * 19 17 16 21 21 Si 1.86805 * 119.99973 * 164.36725 * 19 17 16 22 22 H 1.48503 * 109.46761 * 89.99948 * 21 19 17 23 23 H 1.48503 * 109.47160 * 209.99868 * 21 19 17 24 24 H 1.48496 * 109.47085 * 330.00227 * 21 19 17 25 25 C 1.46924 * 118.73797 * 53.61057 * 7 6 5 26 26 H 1.09002 * 109.47299 * 299.92538 * 1 2 3 27 27 H 1.09002 * 109.47106 * 59.91543 * 1 2 3 28 28 H 1.08997 * 109.47498 * 179.91682 * 1 2 3 29 29 H 1.08996 * 109.47283 * 180.08301 * 3 2 1 30 30 H 1.09004 * 109.47317 * 300.08276 * 3 2 1 31 31 H 1.08998 * 109.47116 * 60.07648 * 3 2 1 32 32 H 1.08999 * 109.45954 * 178.60297 * 4 2 1 33 33 H 1.09001 * 109.45926 * 298.56157 * 4 2 1 34 34 H 1.09000 * 109.50042 * 181.31778 * 5 4 2 35 35 H 1.09005 * 109.49554 * 301.38165 * 5 4 2 36 36 H 1.09000 * 109.58803 * 65.14998 * 6 5 4 37 37 H 1.08999 * 109.58976 * 185.43874 * 6 5 4 38 38 H 1.08007 * 119.87312 * 359.97438 * 12 11 8 39 39 H 1.08001 * 119.75600 * 180.29598 * 13 12 11 40 40 H 1.08001 * 119.87318 * 179.70147 * 14 13 12 41 41 H 1.08007 * 120.12329 * 179.97438 * 15 14 13 42 42 H 0.97006 * 119.99833 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.58768 * 186.60012 * 25 7 6 44 44 H 1.09005 * 109.58669 * 66.17983 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5029 -2.1558 1.2660 6 6 2.0139 -2.9041 0.0308 7 7 1.6514 -2.1382 -1.1695 8 16 0.8194 -2.8555 -2.4087 9 8 1.2092 -2.1810 -3.5972 10 8 0.9616 -4.2579 -2.2287 11 6 -0.8882 -2.4936 -2.1686 12 6 -1.5573 -1.6917 -3.0651 13 6 -2.9022 -1.4105 -2.8821 14 6 -3.5857 -1.9220 -1.7894 15 6 -2.9356 -2.7213 -0.8773 16 6 -1.5718 -3.0185 -1.0565 17 6 -0.8933 -3.8384 -0.1254 18 1 -0.0287 -4.4064 -0.4356 19 6 -1.3423 -3.9139 1.1979 20 7 -2.1779 -3.0183 1.6572 21 14 -0.7483 -5.2936 2.3084 22 1 0.4863 -4.8648 3.0134 23 1 -1.8013 -5.6149 3.3051 24 1 -0.4578 -6.4978 1.4895 25 6 2.0412 -0.7239 -1.2495 26 1 -0.3634 0.5127 0.8907 27 1 -0.3633 0.5152 -0.8892 28 1 -0.3634 -1.0276 -0.0015 29 1 3.1314 1.4409 -0.0015 30 1 1.6774 1.9566 -0.8893 31 1 1.6797 1.9557 0.8907 32 1 3.1305 -0.7445 1.2353 33 1 1.6987 -0.1958 2.1389 34 1 1.8479 -2.6629 2.1671 35 1 0.4131 -2.1355 1.2547 36 1 3.0978 -3.0044 0.0868 37 1 1.5572 -3.8929 -0.0124 38 1 -1.0334 -1.2837 -3.9170 39 1 -3.4204 -0.7842 -3.5931 40 1 -4.6323 -1.6925 -1.6540 41 1 -3.4699 -3.1183 -0.0268 42 1 -2.4888 -3.0705 2.5746 43 1 1.6007 -0.2732 -2.1388 44 1 3.1275 -0.6464 -1.2980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601342416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:50 Heat of formation + Delta-G solvation = -82.481044 kcal Electronic energy + Delta-G solvation = -28277.576625 eV Core-core repulsion = 24706.232505 eV Total energy + Delta-G solvation = -3571.344120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22150 -39.26646 -38.14706 -36.67568 -35.69849 -34.85048 -32.60488 -31.97523 -31.27769 -27.98515 -27.71644 -27.13283 -25.36260 -23.41146 -22.92132 -22.68293 -19.98032 -19.41273 -19.15706 -18.69678 -17.64796 -17.11533 -16.77738 -16.06780 -15.68717 -15.59796 -15.43009 -15.03585 -14.90129 -14.82497 -14.41832 -14.35198 -13.87302 -13.70083 -13.38757 -13.03273 -13.00404 -12.92041 -12.88284 -12.83155 -12.73205 -12.54817 -12.49473 -12.33411 -12.17106 -12.06524 -11.77823 -11.62937 -11.47241 -11.18151 -11.03237 -10.87981 -10.82988 -9.79683 -9.59010 -9.36622 -8.75844 -6.51974 -0.14426 0.61899 1.03491 1.40467 1.47183 1.54363 2.17878 2.31288 2.66924 3.05412 3.56593 3.67022 3.82710 4.00271 4.05920 4.28943 4.36549 4.43349 4.49930 4.53777 4.63304 4.72553 4.76157 4.86338 4.92112 4.94878 4.99918 5.03078 5.04180 5.14336 5.21871 5.27136 5.31536 5.35318 5.37615 5.48258 5.60812 5.63156 5.64987 5.77857 5.89423 5.93299 5.97962 6.07736 6.21159 6.58991 6.76868 6.91241 8.18500 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.008927 C = 0.007128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.083404 B = 3135.925145 C = 3927.048056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.133 4.133 4 C -0.094 4.094 5 C -0.149 4.149 6 C 0.121 3.879 7 N -0.985 5.985 8 S 2.709 3.291 9 O -1.012 7.012 10 O -1.002 7.002 11 C -0.789 4.789 12 C -0.013 4.013 13 C -0.255 4.255 14 C -0.077 4.077 15 C -0.185 4.185 16 C 0.178 3.822 17 C -0.483 4.483 18 H 0.105 0.895 19 C 0.068 3.932 20 N -0.783 5.783 21 Si 0.937 3.063 22 H -0.238 1.238 23 H -0.265 1.265 24 H -0.266 1.266 25 C 0.132 3.868 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.295 0.705 43 H 0.071 0.929 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.578 5.450 4.264 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C -0.191 4.191 4 C -0.131 4.131 5 C -0.188 4.188 6 C -0.003 4.003 7 N -0.822 5.822 8 S 2.808 3.192 9 O -1.003 7.003 10 O -0.993 6.993 11 C -0.884 4.884 12 C -0.032 4.032 13 C -0.276 4.276 14 C -0.096 4.096 15 C -0.205 4.205 16 C 0.173 3.827 17 C -0.510 4.510 18 H 0.123 0.877 19 C -0.153 4.153 20 N -0.406 5.406 21 Si 0.758 3.242 22 H -0.162 1.162 23 H -0.190 1.190 24 H -0.190 1.190 25 C 0.007 3.993 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.884 5.034 3.797 9.335 hybrid contribution -1.128 -0.326 0.656 1.346 sum 5.755 4.707 4.453 8.667 Atomic orbital electron populations 1.21969 0.95357 1.03346 0.99649 1.20862 0.95160 0.96096 0.95387 1.21773 1.01669 0.93569 1.02077 1.21449 1.00642 0.94487 0.96519 1.22108 1.03361 0.96480 0.96872 1.21579 1.00146 0.94872 0.83730 1.57354 1.70893 1.20148 1.33836 1.00650 0.74121 0.72417 0.71989 1.93401 1.83668 1.76434 1.46762 1.93419 1.87512 1.32086 1.86244 1.30004 1.23008 1.23019 1.12356 1.20451 0.94961 0.92501 0.95332 1.20762 0.95130 1.09900 1.01763 1.21161 0.98826 0.95675 0.93949 1.21534 0.95084 1.03547 1.00346 1.17111 0.91437 0.86156 0.87989 1.20526 1.13534 1.22641 0.94293 0.87720 1.26358 0.93023 0.96621 0.99297 1.69821 1.23211 1.29835 1.17714 0.85849 0.80519 0.79470 0.78396 1.16176 1.18968 1.19044 1.21594 1.00764 0.78811 0.98164 0.93856 0.94728 0.91162 0.90861 0.92704 0.92057 0.90360 0.91886 0.90952 0.90391 0.89919 0.90342 0.86924 0.86332 0.86678 0.86857 0.89378 0.91035 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 7.99 71.98 0.57 -4.57 16 2 C -0.07 -2.06 0.77 -52.11 -0.04 -2.10 16 3 C -0.13 -2.88 8.48 71.98 0.61 -2.27 16 4 C -0.09 -2.44 4.71 30.62 0.14 -2.29 16 5 C -0.15 -4.71 5.57 30.67 0.17 -4.54 16 6 C 0.12 4.07 5.46 86.36 0.47 4.55 16 7 N -0.99 -35.89 2.71 -513.07 -1.39 -37.28 16 8 S 2.71 120.47 5.09 -56.49 -0.29 120.18 16 9 O -1.01 -46.74 15.89 -128.00 -2.03 -48.78 16 10 O -1.00 -49.26 14.50 -128.00 -1.86 -51.12 16 11 C -0.79 -37.16 5.30 22.73 0.12 -37.04 16 12 C -0.01 -0.57 9.53 22.22 0.21 -0.36 16 13 C -0.26 -10.84 10.05 22.46 0.23 -10.61 16 14 C -0.08 -3.37 10.02 22.22 0.22 -3.15 16 15 C -0.19 -8.91 8.68 22.73 0.20 -8.71 16 16 C 0.18 8.68 4.32 -21.29 -0.09 8.59 16 17 C -0.48 -22.78 5.82 23.46 0.14 -22.64 16 18 H 0.11 5.09 3.53 -2.91 -0.01 5.08 16 19 C 0.07 2.94 3.86 85.26 0.33 3.27 16 20 N -0.78 -34.13 10.94 21.83 0.24 -33.89 16 21 Si 0.94 33.63 29.59 68.60 2.03 35.66 16 22 H -0.24 -7.73 7.11 99.48 0.71 -7.02 16 23 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 24 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 25 C 0.13 4.03 5.04 86.36 0.43 4.47 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 2.90 3.85 -2.39 -0.01 2.90 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.95 3.88 -2.38 -0.01 2.94 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 2.99 4.77 -2.39 -0.01 2.98 16 38 H 0.11 4.75 7.32 -2.91 -0.02 4.73 16 39 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 40 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.11 5.54 6.20 -2.91 -0.02 5.53 16 42 H 0.29 11.65 8.30 -92.70 -0.77 10.88 16 43 H 0.07 2.33 7.30 -2.39 -0.02 2.31 16 44 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -56.98 338.32 1.43 -55.55 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 1.01 Total: 37.09 kcal Atomic # 6 Polarization: -81.13 SS G_CDS: 3.72 Total: -77.41 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.15 Total: -71.17 kcal Atomic # 8 Polarization: -96.00 SS G_CDS: -3.89 Total: -99.89 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.66 kcal Atomic # 16 Polarization: 120.47 SS G_CDS: -0.29 Total: 120.18 kcal Total: -56.98 1.43 -55.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.933 kcal (2) G-P(sol) polarization free energy of solvation -56.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds