Wall clock time and date at job start Tue Mar 31 2020 14:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.05482 * 2 1 4 4 C 1.54372 * 110.04966 * 238.52346 * 2 1 3 5 5 C 1.54884 * 104.20011 * 217.09102 * 4 2 1 6 6 C 1.54896 * 102.74850 * 37.96944 * 5 4 2 7 7 C 1.53878 * 110.03207 * 121.41120 * 2 1 3 8 8 H 1.08999 * 110.03699 * 238.61882 * 7 2 1 9 9 N 1.46504 * 110.03245 * 0.02562 * 7 2 1 10 10 S 1.65604 * 119.99824 * 214.91983 * 9 7 2 11 11 O 1.42097 * 106.39904 * 309.72786 * 10 9 7 12 12 O 1.42098 * 106.40083 * 176.80569 * 10 9 7 13 13 C 1.76201 * 107.21682 * 63.26863 * 10 9 7 14 14 C 1.37644 * 120.12731 * 243.95666 * 13 10 9 15 15 C 1.38609 * 120.25188 * 180.02562 * 14 13 10 16 16 C 1.38661 * 120.49772 * 359.70050 * 15 14 13 17 17 C 1.37601 * 120.24989 * 0.55009 * 16 15 14 18 18 C 1.40691 * 120.12974 * 63.97437 * 13 10 9 19 19 C 1.41402 * 120.24520 * 359.95656 * 18 13 10 20 20 H 1.07998 * 119.99476 * 330.84998 * 19 18 13 21 21 C 1.39943 * 119.99922 * 150.84869 * 19 18 13 22 22 N 1.30825 * 119.99741 * 162.03452 * 21 19 18 23 23 Si 1.86797 * 120.00334 * 342.03557 * 21 19 18 24 24 H 1.48497 * 109.47318 * 93.84718 * 23 21 19 25 25 H 1.48495 * 109.47169 * 213.84796 * 23 21 19 26 26 H 1.48499 * 109.46937 * 333.84683 * 23 21 19 27 27 H 1.09000 * 109.47187 * 298.58256 * 1 2 3 28 28 H 1.08994 * 109.46911 * 58.58778 * 1 2 3 29 29 H 1.09009 * 109.46914 * 178.58852 * 1 2 3 30 30 H 1.08998 * 109.47433 * 181.41884 * 3 2 1 31 31 H 1.09001 * 109.47109 * 301.41695 * 3 2 1 32 32 H 1.08999 * 109.47193 * 61.41236 * 3 2 1 33 33 H 1.09004 * 110.45689 * 98.42127 * 4 2 1 34 34 H 1.08996 * 110.62070 * 335.83566 * 4 2 1 35 35 H 1.09008 * 110.75790 * 279.65745 * 5 4 2 36 36 H 1.08996 * 110.92008 * 156.35873 * 5 4 2 37 37 H 1.09000 * 110.48550 * 203.38163 * 6 5 4 38 38 H 1.08992 * 110.48675 * 80.73732 * 6 5 4 39 39 H 0.97000 * 120.00023 * 34.91658 * 9 7 2 40 40 H 1.08002 * 119.87266 * 0.02562 * 14 13 10 41 41 H 1.07998 * 119.75073 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.87829 * 180.28164 * 16 15 14 43 43 H 1.07992 * 120.13134 * 179.75027 * 17 16 15 44 44 H 0.97001 * 119.99832 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0593 -0.7572 -1.2368 5 6 3.3147 -1.5015 -0.7182 6 6 2.8882 -1.9406 0.7047 7 6 2.0571 -0.7535 1.2338 8 1 2.6860 -0.0950 1.8330 9 7 0.9359 -1.2454 2.0383 10 16 1.0588 -1.2918 3.6891 11 8 2.2825 -1.9521 3.9819 12 8 -0.2005 -1.7383 4.1728 13 6 1.2446 0.3698 4.2451 14 6 2.4036 0.7618 4.8758 15 6 2.5522 2.0681 5.3147 16 6 1.5404 2.9958 5.1189 17 6 0.3711 2.6249 4.4954 18 6 0.2088 1.3010 4.0465 19 6 -0.9861 0.9099 3.3993 20 1 -0.9683 0.1178 2.6654 21 6 -2.1915 1.5493 3.7099 22 7 -3.2110 1.4544 2.8955 23 14 -2.3451 2.5382 5.2872 24 1 -2.0420 3.9649 5.0085 25 1 -3.7287 2.4196 5.8130 26 1 -1.3865 2.0160 6.2940 27 1 -0.3633 0.4917 0.9024 28 1 -0.3633 0.5356 -0.8770 29 1 -0.3633 -1.0275 -0.0253 30 1 3.1443 1.4263 -0.0254 31 1 1.6761 1.9622 -0.8770 32 1 1.7174 1.9471 0.9024 33 1 2.3304 -0.0557 -2.0258 34 1 1.3165 -1.4683 -1.5984 35 1 4.1717 -0.8293 -0.6743 36 1 3.5374 -2.3688 -1.3396 37 1 3.7644 -2.1027 1.3325 38 1 2.2784 -2.8428 0.6588 39 1 0.1216 -1.5440 1.6040 40 1 3.2001 0.0488 5.0293 41 1 3.4648 2.3668 5.8090 42 1 1.6687 4.0121 5.4609 43 1 -0.4173 3.3480 4.3475 44 1 -4.0464 1.8979 3.1105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601367007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:23 Heat of formation + Delta-G solvation = -71.989598 kcal Electronic energy + Delta-G solvation = -27387.847139 eV Core-core repulsion = 23816.957962 eV Total energy + Delta-G solvation = -3570.889177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.24625 -37.86050 -36.21434 -34.83777 -33.91694 -33.09392 -31.94068 -30.72313 -30.10414 -27.36809 -26.52398 -25.43332 -24.01118 -22.05955 -21.20803 -20.56691 -18.68940 -18.57287 -17.77261 -17.04127 -16.39447 -15.77455 -15.37417 -14.95265 -14.56977 -14.23591 -14.10764 -13.76338 -13.51390 -13.16386 -12.83786 -12.80557 -12.61864 -12.33223 -12.26070 -11.94452 -11.79361 -11.36383 -11.23082 -11.15604 -11.12024 -11.01654 -10.93388 -10.77707 -10.74934 -10.59866 -10.44816 -10.37299 -10.23222 -10.07282 -9.94487 -9.55391 -9.32089 -8.72619 -8.25782 -7.85454 -7.24410 -4.87052 1.52405 2.07871 2.51986 2.95910 3.07943 3.18956 3.78624 3.92295 4.26141 4.63660 4.71264 4.85177 4.99624 5.10221 5.44675 5.48436 5.57308 5.59347 5.64761 5.69227 5.79324 5.83592 5.92904 5.94296 6.03680 6.06186 6.12583 6.18068 6.21228 6.25548 6.35420 6.41038 6.42397 6.55986 6.61562 6.64649 6.79514 6.88571 6.94257 7.08992 7.25042 7.38608 7.54149 7.66192 7.79426 8.03667 8.26273 8.48520 9.74154 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.006360 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.331575 B = 4401.498289 C = 4871.555911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.139 4.139 7 C 0.166 3.834 8 H 0.087 0.913 9 N -1.112 6.112 10 S 2.697 3.303 11 O -0.996 6.996 12 O -0.965 6.965 13 C -0.769 4.769 14 C 0.017 3.983 15 C -0.262 4.262 16 C -0.043 4.043 17 C -0.237 4.237 18 C 0.161 3.839 19 C -0.430 4.430 20 H 0.107 0.893 21 C 0.092 3.908 22 N -0.776 5.776 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.241 1.241 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.414 0.586 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 -0.195 -6.564 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.178 4.178 7 C 0.057 3.943 8 H 0.105 0.895 9 N -0.871 5.871 10 S 2.794 3.206 11 O -0.986 6.986 12 O -0.955 6.955 13 C -0.863 4.863 14 C -0.003 4.003 15 C -0.282 4.282 16 C -0.062 4.062 17 C -0.256 4.256 18 C 0.156 3.844 19 C -0.457 4.457 20 H 0.125 0.875 21 C -0.132 4.132 22 N -0.397 5.397 23 Si 0.738 3.262 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.164 1.164 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.595 -0.934 -6.088 9.024 hybrid contribution -0.537 1.267 0.338 1.417 sum 6.058 0.333 -5.750 8.359 Atomic orbital electron populations 1.22006 0.93448 1.01364 1.03660 1.21369 0.96623 0.95290 0.93836 1.21891 1.00201 0.95100 1.02425 1.22508 0.97146 0.98711 0.96888 1.22453 0.97760 0.99679 0.96261 1.22892 1.00167 0.98678 0.96070 1.21321 0.86478 0.94165 0.92298 0.89506 1.55878 1.24593 1.80934 1.25665 1.01203 0.72783 0.74608 0.72021 1.93458 1.47478 1.73907 1.83794 1.93555 1.42581 1.81344 1.78054 1.29939 1.05856 1.22571 1.27983 1.20403 0.93804 0.95396 0.90669 1.20476 1.00273 0.94491 1.12945 1.20818 0.93567 0.97441 0.94326 1.21194 0.98546 0.96550 1.09356 1.17026 0.90955 0.90034 0.86370 1.19854 0.90582 1.16374 1.18865 0.87500 1.26161 0.95122 0.93898 0.98048 1.69641 1.03558 1.32610 1.33913 0.86321 0.78027 0.79489 0.82407 1.19344 1.21198 1.16393 0.89321 0.93212 0.93112 0.92978 0.92862 0.91589 0.91845 0.91610 0.91587 0.91842 0.90930 0.90958 0.74907 0.86955 0.88235 0.88395 0.87597 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 7.13 37.16 0.26 -1.99 16 2 C -0.07 -0.97 0.94 -153.33 -0.14 -1.11 16 3 C -0.14 -1.91 8.15 37.16 0.30 -1.60 16 4 C -0.11 -1.33 5.90 -25.02 -0.15 -1.48 16 5 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 6 C -0.14 -1.89 6.53 -25.07 -0.16 -2.05 16 7 C 0.17 2.57 3.08 -66.81 -0.21 2.36 16 8 H 0.09 1.42 7.34 -51.93 -0.38 1.04 16 9 N -1.11 -19.69 3.72 -3.93 -0.01 -19.71 16 10 S 2.70 57.90 4.87 -107.50 -0.52 57.38 16 11 O -1.00 -21.99 16.77 -57.17 -0.96 -22.94 16 12 O -0.96 -23.89 16.67 -57.17 -0.95 -24.84 16 13 C -0.77 -17.39 5.71 -38.87 -0.22 -17.61 16 14 C 0.02 0.36 9.53 -39.66 -0.38 -0.02 16 15 C -0.26 -5.23 10.05 -39.29 -0.39 -5.63 16 16 C -0.04 -0.87 10.02 -39.66 -0.40 -1.27 16 17 C -0.24 -5.34 7.20 -38.87 -0.28 -5.62 16 18 C 0.16 3.84 5.12 -106.82 -0.55 3.29 16 19 C -0.43 -10.58 7.67 -37.74 -0.29 -10.87 16 20 H 0.11 2.59 4.34 -52.49 -0.23 2.36 16 21 C 0.09 2.23 5.41 -17.34 -0.09 2.14 16 22 N -0.78 -18.78 13.93 55.55 0.77 -18.01 16 23 Si 0.91 19.87 24.50 -169.99 -4.16 15.71 16 24 H -0.27 -5.49 6.63 56.52 0.37 -5.12 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.24 -5.54 6.90 56.52 0.39 -5.15 16 27 H 0.09 1.64 5.59 -51.93 -0.29 1.35 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.73 6.84 -51.92 -0.36 0.37 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 34 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.41 6.92 6.18 -34.48 -0.21 6.71 16 40 H 0.11 2.19 7.33 -52.49 -0.38 1.80 16 41 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 2.33 4.59 -52.49 -0.24 2.09 16 44 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -28.37 347.83 -9.77 -38.14 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.30 Total: 12.05 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: -2.87 Total: -43.02 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.76 Total: -37.71 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -1.91 Total: -47.79 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.16 Total: 15.71 kcal Atomic # 16 Polarization: 57.90 SS G_CDS: -0.52 Total: 57.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.37 -9.77 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601367007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.849 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds