Wall clock time and date at job start Tue Mar 31 2020 14:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.05482 * 2 1 4 4 C 1.54372 * 110.04966 * 238.52346 * 2 1 3 5 5 C 1.54884 * 104.20011 * 217.09102 * 4 2 1 6 6 C 1.54896 * 102.74850 * 37.96944 * 5 4 2 7 7 C 1.53878 * 110.03207 * 121.41120 * 2 1 3 8 8 H 1.08999 * 110.03699 * 238.61882 * 7 2 1 9 9 N 1.46504 * 110.03245 * 0.02562 * 7 2 1 10 10 S 1.65604 * 119.99824 * 214.91983 * 9 7 2 11 11 O 1.42097 * 106.39904 * 309.72786 * 10 9 7 12 12 O 1.42098 * 106.40083 * 176.80569 * 10 9 7 13 13 C 1.76201 * 107.21682 * 63.26863 * 10 9 7 14 14 C 1.37644 * 120.12731 * 243.95666 * 13 10 9 15 15 C 1.38609 * 120.25188 * 180.02562 * 14 13 10 16 16 C 1.38661 * 120.49772 * 359.70050 * 15 14 13 17 17 C 1.37601 * 120.24989 * 0.55009 * 16 15 14 18 18 C 1.40691 * 120.12974 * 63.97437 * 13 10 9 19 19 C 1.41402 * 120.24520 * 359.95656 * 18 13 10 20 20 H 1.07998 * 119.99476 * 330.84998 * 19 18 13 21 21 C 1.39943 * 119.99922 * 150.84869 * 19 18 13 22 22 N 1.30825 * 119.99741 * 162.03452 * 21 19 18 23 23 Si 1.86797 * 120.00334 * 342.03557 * 21 19 18 24 24 H 1.48497 * 109.47318 * 93.84718 * 23 21 19 25 25 H 1.48495 * 109.47169 * 213.84796 * 23 21 19 26 26 H 1.48499 * 109.46937 * 333.84683 * 23 21 19 27 27 H 1.09000 * 109.47187 * 298.58256 * 1 2 3 28 28 H 1.08994 * 109.46911 * 58.58778 * 1 2 3 29 29 H 1.09009 * 109.46914 * 178.58852 * 1 2 3 30 30 H 1.08998 * 109.47433 * 181.41884 * 3 2 1 31 31 H 1.09001 * 109.47109 * 301.41695 * 3 2 1 32 32 H 1.08999 * 109.47193 * 61.41236 * 3 2 1 33 33 H 1.09004 * 110.45689 * 98.42127 * 4 2 1 34 34 H 1.08996 * 110.62070 * 335.83566 * 4 2 1 35 35 H 1.09008 * 110.75790 * 279.65745 * 5 4 2 36 36 H 1.08996 * 110.92008 * 156.35873 * 5 4 2 37 37 H 1.09000 * 110.48550 * 203.38163 * 6 5 4 38 38 H 1.08992 * 110.48675 * 80.73732 * 6 5 4 39 39 H 0.97000 * 120.00023 * 34.91658 * 9 7 2 40 40 H 1.08002 * 119.87266 * 0.02562 * 14 13 10 41 41 H 1.07998 * 119.75073 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.87829 * 180.28164 * 16 15 14 43 43 H 1.07992 * 120.13134 * 179.75027 * 17 16 15 44 44 H 0.97001 * 119.99832 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0593 -0.7572 -1.2368 5 6 3.3147 -1.5015 -0.7182 6 6 2.8882 -1.9406 0.7047 7 6 2.0571 -0.7535 1.2338 8 1 2.6860 -0.0950 1.8330 9 7 0.9359 -1.2454 2.0383 10 16 1.0588 -1.2918 3.6891 11 8 2.2825 -1.9521 3.9819 12 8 -0.2005 -1.7383 4.1728 13 6 1.2446 0.3698 4.2451 14 6 2.4036 0.7618 4.8758 15 6 2.5522 2.0681 5.3147 16 6 1.5404 2.9958 5.1189 17 6 0.3711 2.6249 4.4954 18 6 0.2088 1.3010 4.0465 19 6 -0.9861 0.9099 3.3993 20 1 -0.9683 0.1178 2.6654 21 6 -2.1915 1.5493 3.7099 22 7 -3.2110 1.4544 2.8955 23 14 -2.3451 2.5382 5.2872 24 1 -2.0420 3.9649 5.0085 25 1 -3.7287 2.4196 5.8130 26 1 -1.3865 2.0160 6.2940 27 1 -0.3633 0.4917 0.9024 28 1 -0.3633 0.5356 -0.8770 29 1 -0.3633 -1.0275 -0.0253 30 1 3.1443 1.4263 -0.0254 31 1 1.6761 1.9622 -0.8770 32 1 1.7174 1.9471 0.9024 33 1 2.3304 -0.0557 -2.0258 34 1 1.3165 -1.4683 -1.5984 35 1 4.1717 -0.8293 -0.6743 36 1 3.5374 -2.3688 -1.3396 37 1 3.7644 -2.1027 1.3325 38 1 2.2784 -2.8428 0.6588 39 1 0.1216 -1.5440 1.6040 40 1 3.2001 0.0488 5.0293 41 1 3.4648 2.3668 5.8090 42 1 1.6687 4.0121 5.4609 43 1 -0.4173 3.3480 4.3475 44 1 -4.0464 1.8979 3.1105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601367007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:22 Heat of formation + Delta-G solvation = -89.382433 kcal Electronic energy + Delta-G solvation = -27388.601349 eV Core-core repulsion = 23816.957962 eV Total energy + Delta-G solvation = -3571.643387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40258 -39.55509 -38.01306 -36.66217 -35.66992 -34.43980 -33.03732 -32.44822 -31.79289 -28.51074 -27.71706 -27.17342 -25.13817 -23.74881 -22.93290 -21.60909 -20.29562 -19.80397 -19.54576 -18.67399 -18.04420 -17.23772 -17.01935 -16.21853 -15.97846 -15.89521 -15.50258 -15.35245 -15.19851 -14.56802 -14.26496 -14.04028 -13.96234 -13.83385 -13.59645 -13.54375 -13.09199 -12.98771 -12.98253 -12.88140 -12.68539 -12.57962 -12.41864 -12.31754 -12.13888 -11.86738 -11.73721 -11.72296 -11.44625 -11.33556 -11.25087 -11.15163 -11.02781 -10.13871 -9.95055 -9.58516 -9.03085 -6.67752 -0.16162 0.35904 0.79108 1.20893 1.35282 1.43073 2.03882 2.32795 2.52669 2.96316 3.33620 3.57154 3.76063 3.82525 3.94522 4.22476 4.31581 4.32984 4.45872 4.49657 4.50283 4.55259 4.62557 4.69016 4.76587 4.88359 4.90825 4.95747 4.99128 5.09888 5.12954 5.17289 5.19897 5.30787 5.32739 5.40284 5.46766 5.54789 5.58626 5.60241 5.63079 5.70397 5.85049 6.05550 6.20985 6.28721 6.51465 6.70501 8.00471 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.006360 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.331575 B = 4401.498289 C = 4871.555911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.140 4.140 7 C 0.155 3.845 8 H 0.076 0.924 9 N -1.103 6.103 10 S 2.710 3.290 11 O -1.004 7.004 12 O -1.004 7.004 13 C -0.782 4.782 14 C 0.002 3.998 15 C -0.251 4.251 16 C -0.040 4.040 17 C -0.260 4.260 18 C 0.149 3.851 19 C -0.459 4.459 20 H 0.098 0.902 21 C 0.060 3.940 22 N -0.806 5.806 23 Si 0.948 3.052 24 H -0.246 1.246 25 H -0.276 1.276 26 H -0.262 1.262 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.417 0.583 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 0.748 -7.229 11.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.193 4.193 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.180 4.180 7 C 0.048 3.952 8 H 0.094 0.906 9 N -0.864 5.864 10 S 2.806 3.194 11 O -0.994 6.994 12 O -0.995 6.995 13 C -0.875 4.875 14 C -0.018 4.018 15 C -0.271 4.271 16 C -0.059 4.059 17 C -0.279 4.279 18 C 0.144 3.856 19 C -0.487 4.487 20 H 0.115 0.885 21 C -0.161 4.161 22 N -0.429 5.429 23 Si 0.771 3.229 24 H -0.171 1.171 25 H -0.202 1.202 26 H -0.186 1.186 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.256 0.744 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.125 0.875 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.712 0.021 -6.759 11.027 hybrid contribution -1.027 0.963 0.570 1.519 sum 7.685 0.984 -6.189 9.917 Atomic orbital electron populations 1.21953 0.94817 1.01297 1.02269 1.21366 0.95416 0.95659 0.94405 1.21866 1.01251 0.94721 1.01493 1.22476 0.97367 0.98889 0.95865 1.22441 0.97735 1.00589 0.94419 1.22901 0.99559 0.97725 0.97800 1.21617 0.85863 0.95235 0.92487 0.90606 1.55581 1.25582 1.80903 1.24317 1.00642 0.71761 0.74229 0.72753 1.93435 1.47434 1.74081 1.84483 1.93497 1.44341 1.82082 1.79564 1.30113 1.06298 1.22766 1.28369 1.20729 0.93717 0.96663 0.90642 1.20959 1.01299 0.93680 1.11152 1.21265 0.92430 0.99381 0.92789 1.21371 0.99868 0.96127 1.10551 1.17213 0.90951 0.90974 0.86452 1.19949 0.91522 1.17215 1.19996 0.88461 1.26685 0.94988 0.94650 0.99740 1.69647 1.04165 1.34148 1.34969 0.85784 0.77811 0.79710 0.79565 1.17110 1.20207 1.18587 0.92872 0.92245 0.92658 0.91290 0.91549 0.94631 0.90005 0.91112 0.90485 0.89795 0.91328 0.91030 0.74441 0.85488 0.84581 0.84659 0.87450 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 7.13 71.98 0.51 -4.02 16 2 C -0.07 -1.80 0.94 -51.42 -0.05 -1.85 16 3 C -0.14 -3.60 8.15 71.98 0.59 -3.01 16 4 C -0.11 -2.21 5.90 31.70 0.19 -2.02 16 5 C -0.11 -2.19 6.91 31.89 0.22 -1.97 16 6 C -0.14 -3.62 6.53 31.67 0.21 -3.41 16 7 C 0.16 4.77 3.08 45.72 0.14 4.91 16 8 H 0.08 2.48 7.34 -2.39 -0.02 2.46 16 9 N -1.10 -40.07 3.72 -166.36 -0.62 -40.69 16 10 S 2.71 119.27 4.87 -56.49 -0.28 119.00 16 11 O -1.00 -44.54 16.77 -128.00 -2.15 -46.69 16 12 O -1.00 -51.82 16.67 -128.00 -2.13 -53.95 16 13 C -0.78 -35.64 5.71 22.73 0.13 -35.51 16 14 C 0.00 0.09 9.53 22.22 0.21 0.30 16 15 C -0.25 -9.30 10.05 22.46 0.23 -9.07 16 16 C -0.04 -1.54 10.02 22.22 0.22 -1.32 16 17 C -0.26 -11.55 7.20 22.73 0.16 -11.38 16 18 C 0.15 7.21 5.12 -21.29 -0.11 7.10 16 19 C -0.46 -23.52 7.67 23.46 0.18 -23.34 16 20 H 0.10 5.01 4.34 -2.91 -0.01 4.99 16 21 C 0.06 3.00 5.41 85.26 0.46 3.46 16 22 N -0.81 -40.38 13.93 21.83 0.30 -40.07 16 23 Si 0.95 40.94 24.50 68.60 1.68 42.62 16 24 H -0.25 -9.66 6.63 99.48 0.66 -9.00 16 25 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.26 -12.06 6.90 99.48 0.69 -11.38 16 27 H 0.05 2.06 5.59 -2.39 -0.01 2.05 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.61 6.84 -2.38 -0.02 1.59 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.41 7.84 -2.39 -0.02 1.40 16 34 H 0.07 1.40 7.85 -2.39 -0.02 1.38 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 39 H 0.42 14.59 6.18 -96.74 -0.60 13.99 16 40 H 0.13 4.75 7.33 -2.91 -0.02 4.73 16 41 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 42 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.11 4.66 4.59 -2.91 -0.01 4.65 16 44 H 0.30 13.48 8.30 -92.71 -0.77 12.72 16 Total: -1.00 -62.17 347.83 0.45 -61.71 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.35 Total: 39.21 kcal Atomic # 6 Polarization: -84.43 SS G_CDS: 3.29 Total: -81.14 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -0.32 Total: -80.76 kcal Atomic # 8 Polarization: -96.36 SS G_CDS: -4.28 Total: -100.64 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.68 Total: 42.62 kcal Atomic # 16 Polarization: 119.27 SS G_CDS: -0.28 Total: 119.00 kcal Total: -62.17 0.45 -61.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601367007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.668 kcal (2) G-P(sol) polarization free energy of solvation -62.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds