Wall clock time and date at job start Tue Mar 31 2020 14:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.05436 * 2 1 4 4 C 1.54264 * 110.03236 * 238.58651 * 2 1 3 5 5 C 1.54889 * 104.19452 * 264.32008 * 4 2 1 6 6 C 1.54890 * 102.75104 * 322.06331 * 5 4 2 7 7 C 1.53876 * 110.03254 * 121.41514 * 2 1 3 8 8 H 1.09002 * 110.03173 * 359.95361 * 7 2 1 9 9 N 1.46501 * 110.03186 * 238.57263 * 7 2 1 10 10 S 1.65595 * 119.99826 * 141.11080 * 9 7 2 11 11 O 1.42098 * 106.40354 * 311.69293 * 10 9 7 12 12 O 1.42106 * 106.40156 * 178.77432 * 10 9 7 13 13 C 1.76207 * 107.21839 * 65.23642 * 10 9 7 14 14 C 1.37634 * 120.12433 * 246.72555 * 13 10 9 15 15 C 1.38614 * 120.24401 * 179.70493 * 14 13 10 16 16 C 1.38653 * 120.50485 * 0.28570 * 15 14 13 17 17 C 1.37595 * 120.24685 * 359.97438 * 16 15 14 18 18 C 1.40700 * 120.12630 * 66.96575 * 13 10 9 19 19 C 1.41388 * 120.24836 * 0.02562 * 18 13 10 20 20 H 1.08005 * 119.99753 * 330.71728 * 19 18 13 21 21 C 1.39941 * 120.00180 * 150.72146 * 19 18 13 22 22 N 1.30818 * 120.00284 * 347.72431 * 21 19 18 23 23 Si 1.86805 * 119.99871 * 167.72642 * 21 19 18 24 24 H 1.48495 * 109.47119 * 90.00058 * 23 21 19 25 25 H 1.48504 * 109.47079 * 209.99828 * 23 21 19 26 26 H 1.48502 * 109.46887 * 329.99764 * 23 21 19 27 27 H 1.08997 * 109.47339 * 298.58236 * 1 2 3 28 28 H 1.09003 * 109.46870 * 58.58488 * 1 2 3 29 29 H 1.09001 * 109.47036 * 178.58237 * 1 2 3 30 30 H 1.08999 * 109.47475 * 181.41583 * 3 2 1 31 31 H 1.09000 * 109.47488 * 301.41646 * 3 2 1 32 32 H 1.09003 * 109.47152 * 61.41457 * 3 2 1 33 33 H 1.08998 * 110.48879 * 23.00331 * 4 2 1 34 34 H 1.09004 * 110.48486 * 145.51810 * 4 2 1 35 35 H 1.09007 * 110.75433 * 80.37280 * 5 4 2 36 36 H 1.08997 * 110.76374 * 203.55894 * 5 4 2 37 37 H 1.09003 * 110.48473 * 279.26215 * 6 5 4 38 38 H 1.08999 * 110.48785 * 156.61752 * 6 5 4 39 39 H 0.97000 * 120.00112 * 321.10919 * 9 7 2 40 40 H 1.07996 * 119.87786 * 359.96976 * 14 13 10 41 41 H 1.08008 * 119.74631 * 180.27647 * 15 14 13 42 42 H 1.08000 * 119.87961 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.13061 * 180.02562 * 17 16 15 44 44 H 0.96993 * 120.00543 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 2.3281 -2.1901 -0.7192 6 6 2.8875 -1.9406 0.7035 7 6 2.0571 -0.7535 1.2338 8 1 1.2229 -1.1185 1.8329 9 7 2.9032 0.1312 2.0385 10 16 2.8316 0.0670 3.6916 11 8 1.4533 0.1046 4.0353 12 8 3.7782 1.0121 4.1713 13 6 3.4227 -1.5201 4.1781 14 6 2.5670 -2.4271 4.7607 15 6 3.0279 -3.6785 5.1388 16 6 4.3546 -4.0293 4.9409 17 6 5.2291 -3.1365 4.3651 18 6 4.7723 -1.8631 3.9771 19 6 5.6618 -0.9374 3.3847 20 1 5.2913 -0.2074 2.6802 21 6 7.0223 -0.9671 3.7111 22 7 7.4355 -1.6773 4.7291 23 14 8.2485 0.0076 2.6932 24 1 8.3954 1.3697 3.2660 25 1 9.5641 -0.6811 2.7103 26 1 7.7608 0.1087 1.2942 27 1 -0.3634 0.4916 0.9024 28 1 -0.3633 0.5357 -0.8771 29 1 -0.3633 -1.0274 -0.0254 30 1 3.1443 1.4263 -0.0254 31 1 1.6761 1.9623 -0.8770 32 1 1.7173 1.9472 0.9024 33 1 1.3061 -0.7695 -2.0255 34 1 2.9799 -0.2985 -1.5980 35 1 1.4031 -2.7651 -0.6752 36 1 3.0652 -2.6942 -1.3441 37 1 3.9440 -1.6765 0.6572 38 1 2.7401 -2.8196 1.3309 39 1 3.5055 0.7545 1.6029 40 1 1.5316 -2.1644 4.9200 41 1 2.3483 -4.3857 5.5913 42 1 4.7030 -5.0069 5.2397 43 1 6.2620 -3.4118 4.2114 44 1 8.3784 -1.6976 4.9556 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601367009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:26 Heat of formation + Delta-G solvation = -92.688502 kcal Electronic energy + Delta-G solvation = -27112.469318 eV Core-core repulsion = 23540.682570 eV Total energy + Delta-G solvation = -3571.786749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39304 -39.35840 -38.00530 -36.64993 -35.66502 -34.44794 -33.05045 -31.99084 -31.35145 -28.48384 -27.73963 -27.31859 -25.13322 -23.42910 -22.93508 -21.58573 -20.31473 -19.81806 -19.48927 -18.54398 -17.78052 -17.17668 -17.00847 -16.12848 -16.04942 -15.95803 -15.33923 -15.08842 -14.90672 -14.46498 -14.32229 -13.97623 -13.87861 -13.72261 -13.53101 -13.23603 -13.01680 -12.98516 -12.93100 -12.84555 -12.78221 -12.55145 -12.41375 -12.35740 -12.14170 -11.85252 -11.72343 -11.63851 -11.44137 -11.31926 -11.24877 -11.17842 -11.09139 -10.12406 -9.80923 -9.41079 -8.78998 -6.58898 -0.13338 0.55127 0.98345 1.35632 1.47350 1.51809 2.15481 2.37922 2.64906 3.01131 3.48988 3.57014 3.73584 3.87586 3.95053 4.31244 4.35980 4.45744 4.50036 4.50166 4.52715 4.54973 4.70444 4.75771 4.85372 4.91016 4.98293 5.00172 5.08872 5.14898 5.16340 5.17678 5.27433 5.31210 5.33196 5.43854 5.51663 5.53457 5.59801 5.64086 5.72256 5.83243 6.01247 6.10200 6.27558 6.48771 6.69789 6.84915 8.18107 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.006315 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.493431 B = 4432.771173 C = 5133.657728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.141 4.141 7 C 0.154 3.846 8 H 0.079 0.921 9 N -1.101 6.101 10 S 2.712 3.288 11 O -1.011 7.011 12 O -1.002 7.002 13 C -0.785 4.785 14 C -0.017 4.017 15 C -0.249 4.249 16 C -0.075 4.075 17 C -0.183 4.183 18 C 0.169 3.831 19 C -0.472 4.472 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.810 5.810 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.260 1.260 26 H -0.242 1.242 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.419 0.581 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.423 0.172 -12.854 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.180 4.180 7 C 0.047 3.953 8 H 0.098 0.902 9 N -0.862 5.862 10 S 2.809 3.191 11 O -1.001 7.001 12 O -0.992 6.992 13 C -0.880 4.880 14 C -0.037 4.037 15 C -0.269 4.269 16 C -0.094 4.094 17 C -0.203 4.203 18 C 0.165 3.835 19 C -0.500 4.500 20 H 0.109 0.891 21 C -0.178 4.178 22 N -0.435 5.435 23 Si 0.791 3.209 24 H -0.193 1.193 25 H -0.184 1.184 26 H -0.165 1.165 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.257 0.743 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.647 0.705 -12.066 13.794 hybrid contribution 1.339 -0.242 0.279 1.389 sum -5.309 0.464 -11.787 12.935 Atomic orbital electron populations 1.21921 0.93120 1.02459 1.02146 1.21421 0.96481 0.95675 0.93751 1.21888 1.00941 0.95075 1.02081 1.22453 1.01500 0.94340 0.96063 1.22434 1.01195 0.97450 0.94374 1.22837 1.00187 0.97337 0.97648 1.21637 0.91589 0.89340 0.92752 0.90239 1.55541 1.54830 1.51606 1.24218 1.00529 0.71765 0.74003 0.72821 1.93417 1.35147 1.88026 1.83547 1.93488 1.63837 1.62328 1.79576 1.30129 1.04755 1.23730 1.29336 1.20547 0.97417 0.93126 0.92570 1.20857 0.96333 0.97849 1.11880 1.21217 0.93769 0.98528 0.95883 1.21501 0.99315 0.94147 1.05368 1.17236 0.89194 0.91738 0.85367 1.20068 0.93370 1.13748 1.22812 0.89066 1.26773 1.00864 0.95397 0.94786 1.69819 1.18896 1.32981 1.21757 0.85343 0.77032 0.78479 0.80021 1.19337 1.18388 1.16512 0.93724 0.90507 0.91828 0.92356 0.90564 0.93499 0.89482 0.91084 0.90610 0.90694 0.91525 0.92872 0.74284 0.86324 0.85653 0.86114 0.87136 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.14 71.98 0.59 -2.21 16 2 C -0.07 -1.61 0.94 -51.46 -0.05 -1.66 16 3 C -0.14 -3.11 7.17 71.98 0.52 -2.59 16 4 C -0.11 -1.97 5.90 31.67 0.19 -1.78 16 5 C -0.12 -2.46 6.91 31.89 0.22 -2.24 16 6 C -0.14 -4.12 6.53 31.67 0.21 -3.91 16 7 C 0.15 4.60 3.22 45.72 0.15 4.75 16 8 H 0.08 2.55 7.06 -2.39 -0.02 2.53 16 9 N -1.10 -38.38 3.82 -166.37 -0.64 -39.01 16 10 S 2.71 120.84 4.94 -56.49 -0.28 120.56 16 11 O -1.01 -46.52 16.34 -128.00 -2.09 -48.61 16 12 O -1.00 -51.42 16.41 -128.00 -2.10 -53.52 16 13 C -0.79 -37.76 5.95 22.73 0.14 -37.63 16 14 C -0.02 -0.76 9.54 22.22 0.21 -0.55 16 15 C -0.25 -10.52 10.05 22.46 0.23 -10.30 16 16 C -0.08 -3.31 10.02 22.22 0.22 -3.09 16 17 C -0.18 -9.13 8.65 22.73 0.20 -8.94 16 18 C 0.17 8.67 5.53 -21.29 -0.12 8.56 16 19 C -0.47 -23.89 7.57 23.46 0.18 -23.71 16 20 H 0.09 4.32 5.90 -2.91 -0.02 4.31 16 21 C 0.04 1.92 5.22 85.26 0.44 2.36 16 22 N -0.81 -40.78 10.98 21.82 0.24 -40.54 16 23 Si 0.97 36.70 29.58 68.60 2.03 38.73 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 25 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 26 H -0.24 -8.49 7.11 99.48 0.71 -7.79 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.26 6.84 -2.39 -0.02 1.24 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.15 7.81 -2.39 -0.02 1.13 16 33 H 0.09 1.26 7.84 -2.39 -0.02 1.24 16 34 H 0.07 1.29 7.83 -2.38 -0.02 1.27 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.42 13.23 6.42 -96.75 -0.62 12.61 16 40 H 0.12 4.94 7.32 -2.91 -0.02 4.92 16 41 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.11 5.64 6.34 -2.91 -0.02 5.63 16 44 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 Total: -1.00 -64.37 357.54 0.86 -63.51 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.38 Total: 41.82 kcal Atomic # 6 Polarization: -86.25 SS G_CDS: 3.31 Total: -82.93 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -0.40 Total: -79.55 kcal Atomic # 8 Polarization: -97.94 SS G_CDS: -4.19 Total: -102.13 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 120.84 SS G_CDS: -0.28 Total: 120.56 kcal Total: -64.37 0.86 -63.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601367009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.176 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds