Wall clock time and date at job start Tue Mar 31 2020 14:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 110.01903 * 2 1 4 4 C 1.53876 * 110.03072 * 238.55570 * 2 1 3 5 5 C 1.54271 * 106.59946 * 240.71544 * 4 2 1 6 6 C 1.54890 * 104.19326 * 23.60955 * 5 4 2 7 7 H 1.09000 * 110.75399 * 80.37650 * 6 5 4 8 8 N 1.46500 * 110.75253 * 203.73907 * 6 5 4 9 9 S 1.65601 * 120.00295 * 266.28819 * 8 6 5 10 10 O 1.42098 * 106.40212 * 176.97621 * 9 8 6 11 11 O 1.42093 * 106.40406 * 309.90145 * 9 8 6 12 12 C 1.76203 * 107.21374 * 63.44025 * 9 8 6 13 13 C 1.37632 * 120.12864 * 244.94875 * 12 9 8 14 14 C 1.38614 * 120.24966 * 179.97438 * 13 12 9 15 15 C 1.38657 * 120.50070 * 0.02562 * 14 13 12 16 16 C 1.37603 * 120.24839 * 0.02562 * 15 14 13 17 17 C 1.40701 * 120.12497 * 64.67620 * 12 9 8 18 18 C 1.41395 * 120.24817 * 359.97438 * 17 12 9 19 19 H 1.07999 * 119.99422 * 331.58332 * 18 17 12 20 20 C 1.39940 * 120.00293 * 151.58333 * 18 17 12 21 21 N 1.30829 * 119.99868 * 347.94509 * 20 18 17 22 22 Si 1.86796 * 120.00142 * 167.95172 * 20 18 17 23 23 H 1.48504 * 109.47000 * 89.99867 * 22 20 18 24 24 H 1.48495 * 109.47387 * 209.99693 * 22 20 18 25 25 H 1.48495 * 109.47409 * 330.00083 * 22 20 18 26 26 C 1.54271 * 110.03104 * 121.39133 * 2 1 3 27 27 H 1.09001 * 109.47223 * 298.61030 * 1 2 3 28 28 H 1.08996 * 109.47259 * 58.60759 * 1 2 3 29 29 H 1.09002 * 109.47418 * 178.60943 * 1 2 3 30 30 H 1.08994 * 109.47437 * 181.39200 * 3 2 1 31 31 H 1.09001 * 109.47132 * 301.39206 * 3 2 1 32 32 H 1.08998 * 109.46954 * 61.38767 * 3 2 1 33 33 H 1.09003 * 110.03069 * 121.43348 * 4 2 1 34 34 H 1.08995 * 110.03672 * 0.02562 * 4 2 1 35 35 H 1.09003 * 110.48555 * 264.93656 * 5 4 2 36 36 H 1.08997 * 110.48273 * 142.29203 * 5 4 2 37 37 H 0.97003 * 119.99523 * 86.30236 * 8 6 5 38 38 H 1.07999 * 119.87842 * 359.97438 * 13 12 9 39 39 H 1.07995 * 119.75043 * 179.97438 * 14 13 12 40 40 H 1.08003 * 119.87423 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.12613 * 179.97438 * 16 15 14 42 42 H 0.96996 * 120.00053 * 179.97438 * 21 20 18 43 43 H 1.08997 * 110.48626 * 336.99721 * 26 2 1 44 44 H 1.08999 * 110.60075 * 214.40614 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0570 -0.7542 -1.2334 5 6 2.8874 -1.9411 -0.7026 6 6 2.3280 -2.1898 0.7201 7 1 1.4030 -2.7649 0.6764 8 7 3.3219 -2.8655 1.5579 9 16 3.3162 -4.5169 1.6808 10 8 4.4284 -4.8626 2.4949 11 8 1.9808 -4.8917 1.9896 12 6 3.6551 -5.1605 0.0760 13 6 2.7001 -5.8946 -0.5899 14 6 2.9639 -6.4016 -1.8527 15 6 4.1903 -6.1766 -2.4593 16 6 5.1603 -5.4464 -1.8118 17 6 4.9011 -4.9210 -0.5322 18 6 5.8877 -4.1630 0.1396 19 1 5.5947 -3.4062 0.8522 20 6 7.2436 -4.3933 -0.1188 21 7 7.6103 -5.4532 -0.7924 22 14 8.5300 -3.1875 0.4980 23 1 8.9757 -3.5909 1.8560 24 1 9.6929 -3.1888 -0.4254 25 1 7.9440 -1.8242 0.5541 26 6 2.0584 -0.7550 1.2372 27 1 -0.3634 0.4921 0.9022 28 1 -0.3633 0.5353 -0.8772 29 1 -0.3634 -1.0274 -0.0249 30 1 3.1433 1.4273 -0.0250 31 1 1.6751 1.9622 -0.8772 32 1 1.7157 1.9473 0.9022 33 1 2.6867 -0.0962 -1.8324 34 1 1.2229 -1.1198 -1.8322 35 1 3.9439 -1.6770 -0.6563 36 1 2.7400 -2.8203 -1.3297 37 1 3.9832 -2.3455 2.0408 38 1 1.7416 -6.0763 -0.1267 39 1 2.2088 -6.9768 -2.3677 40 1 4.3849 -6.5760 -3.4437 41 1 6.1150 -5.2727 -2.2860 42 1 8.5500 -5.6127 -0.9719 43 1 1.3060 -0.7687 2.0258 44 1 2.9806 -0.3003 1.5990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601383360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:33 Heat of formation + Delta-G solvation = -83.921490 kcal Electronic energy + Delta-G solvation = -26761.542151 eV Core-core repulsion = 23190.135568 eV Total energy + Delta-G solvation = -3571.406583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.08720 -37.57676 -36.18048 -34.80306 -34.32008 -33.85013 -30.44880 -30.22049 -29.52563 -27.84728 -27.30335 -25.53360 -23.89410 -21.64117 -21.14870 -20.48187 -18.94789 -18.38419 -17.69901 -16.86258 -16.21546 -15.62142 -15.38778 -15.00300 -14.40858 -14.31017 -13.83692 -13.60074 -13.31284 -13.20442 -13.14784 -13.06779 -12.75335 -12.15526 -12.09409 -11.80991 -11.54542 -11.49904 -11.46265 -11.26325 -11.17232 -11.06988 -10.99245 -10.81405 -10.71428 -10.64173 -10.52575 -10.42038 -10.35798 -10.11815 -9.89605 -9.42875 -9.38783 -8.68530 -8.00854 -7.58833 -7.02493 -4.74821 1.57692 2.35908 2.74215 2.96252 2.99353 3.12206 3.77010 3.94861 4.41743 4.63406 4.69700 4.79640 4.84701 5.29642 5.30172 5.44584 5.48306 5.52009 5.58753 5.63365 5.68207 5.80641 5.82325 5.92384 5.99639 6.02786 6.06402 6.10035 6.21766 6.25513 6.29685 6.34092 6.41860 6.53213 6.66513 6.75613 6.84439 6.96746 7.10148 7.32093 7.50509 7.59012 7.70216 7.82374 7.90804 8.30152 8.51329 8.66490 9.90434 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.005858 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.561971 B = 4778.934082 C = 5467.847173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.142 4.142 6 C 0.153 3.847 7 H 0.093 0.907 8 N -1.114 6.114 9 S 2.698 3.302 10 O -0.967 6.967 11 O -1.000 7.000 12 C -0.770 4.770 13 C -0.003 4.003 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.191 3.809 18 C -0.445 4.445 19 H 0.087 0.913 20 C 0.081 3.919 21 N -0.777 5.777 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.256 1.256 26 C -0.116 4.116 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.410 0.590 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.287 0.713 43 H 0.069 0.931 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 10.831 -1.061 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.152 4.152 5 C -0.181 4.181 6 C 0.045 3.955 7 H 0.111 0.889 8 N -0.869 5.869 9 S 2.796 3.204 10 O -0.957 6.957 11 O -0.991 6.991 12 C -0.866 4.866 13 C -0.023 4.023 14 C -0.270 4.270 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.186 3.814 18 C -0.473 4.473 19 H 0.105 0.895 20 C -0.140 4.140 21 N -0.400 5.400 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.156 4.156 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.243 0.757 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.466 10.128 -0.411 12.023 hybrid contribution 1.150 0.537 -0.469 1.353 sum -5.316 10.665 -0.879 11.949 Atomic orbital electron populations 1.21933 0.94486 1.01968 1.01279 1.21132 0.95384 0.95186 0.95354 1.21898 1.00983 0.95306 1.01238 1.22252 0.99468 0.96939 0.96535 1.22888 1.00605 0.98349 0.96244 1.21618 0.90821 0.93394 0.89707 0.88947 1.55670 1.43317 1.26477 1.61454 1.01117 0.72486 0.71822 0.74998 1.93542 1.52957 1.81408 1.67817 1.93441 1.38865 1.82130 1.84620 1.29830 1.06073 1.26133 1.24550 1.20236 0.95864 0.92562 0.93637 1.20468 0.98178 1.10627 0.97760 1.20890 0.93843 0.97058 0.97788 1.21502 0.98836 1.02036 0.95423 1.16947 0.88319 0.86157 0.89983 1.19830 0.90741 1.17021 1.19709 0.89525 1.25937 1.00133 0.94993 0.92968 1.69783 1.19461 1.22139 1.28608 0.86206 0.79229 0.81126 0.79821 1.18715 1.19848 1.17983 1.22723 1.01340 0.94496 0.97007 0.92891 0.92855 0.92282 0.92487 0.92903 0.92973 0.91776 0.91784 0.90250 0.90547 0.75668 0.87568 0.88866 0.88955 0.85822 0.90190 0.91249 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.14 37.15 0.30 -1.07 16 2 C -0.07 -0.76 0.94 -153.39 -0.14 -0.91 16 3 C -0.14 -1.31 8.16 37.16 0.30 -1.01 16 4 C -0.11 -1.39 6.11 -25.61 -0.16 -1.54 16 5 C -0.14 -2.15 6.51 -25.07 -0.16 -2.31 16 6 C 0.15 2.31 3.52 -65.94 -0.23 2.08 16 7 H 0.09 1.46 7.68 -51.93 -0.40 1.06 16 8 N -1.11 -19.29 4.73 -3.20 -0.02 -19.31 16 9 S 2.70 58.95 4.95 -107.50 -0.53 58.41 16 10 O -0.97 -24.14 16.60 -57.17 -0.95 -25.09 16 11 O -1.00 -22.87 16.43 -57.17 -0.94 -23.81 16 12 C -0.77 -18.06 5.81 -38.87 -0.23 -18.29 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.25 -5.39 10.05 -39.29 -0.39 -5.79 16 15 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 16 C -0.16 -3.83 8.67 -38.87 -0.34 -4.17 16 17 C 0.19 4.72 5.55 -106.82 -0.59 4.13 16 18 C -0.44 -10.89 7.66 -37.74 -0.29 -11.17 16 19 H 0.09 1.98 5.75 -52.49 -0.30 1.68 16 20 C 0.08 1.92 5.23 -17.34 -0.09 1.83 16 21 N -0.78 -18.93 10.87 55.55 0.60 -18.33 16 22 Si 0.91 17.81 29.58 -169.99 -5.03 12.78 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 26 C -0.12 -1.42 5.53 -25.07 -0.14 -1.55 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 37 H 0.41 6.32 8.50 -34.47 -0.29 6.03 16 38 H 0.11 2.22 7.33 -52.49 -0.38 1.84 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.12 3.04 6.22 -52.49 -0.33 2.71 16 42 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 43 H 0.07 0.79 7.84 -51.93 -0.41 0.39 16 44 H 0.07 0.85 7.74 -51.93 -0.40 0.45 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -29.37 361.76 -11.01 -40.38 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.67 Total: 11.84 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: -2.93 Total: -42.32 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.59 Total: -37.64 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -1.89 Total: -48.90 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 58.95 SS G_CDS: -0.53 Total: 58.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.37 -11.01 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.542 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds