Wall clock time and date at job start Tue Mar 31 2020 14:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.02167 * 2 1 4 4 C 1.53880 * 110.03195 * 121.39180 * 2 1 3 5 5 C 1.54268 * 106.60092 * 119.28086 * 4 2 1 6 6 C 1.54893 * 104.19406 * 336.39191 * 5 4 2 7 7 H 1.08990 * 110.75837 * 279.44287 * 6 5 4 8 8 N 1.46501 * 110.75476 * 156.25190 * 6 5 4 9 9 S 1.65599 * 119.99617 * 93.64884 * 8 6 5 10 10 O 1.42105 * 106.40291 * 178.69577 * 9 8 6 11 11 O 1.42098 * 106.40312 * 311.61516 * 9 8 6 12 12 C 1.76205 * 107.21765 * 65.15798 * 9 8 6 13 13 C 1.37642 * 120.12353 * 244.53268 * 12 9 8 14 14 C 1.38615 * 120.24334 * 180.02562 * 13 12 9 15 15 C 1.38657 * 120.50395 * 359.97438 * 14 13 12 16 16 C 1.37600 * 120.24616 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12786 * 64.25671 * 12 9 8 18 18 C 1.41390 * 120.24301 * 0.02562 * 17 12 9 19 19 H 1.08003 * 120.00308 * 330.11472 * 18 17 12 20 20 C 1.39952 * 120.00147 * 150.12008 * 18 17 12 21 21 N 1.30827 * 119.99764 * 348.08319 * 20 18 17 22 22 Si 1.86798 * 120.00129 * 168.07414 * 20 18 17 23 23 H 1.48507 * 109.46827 * 65.00493 * 22 20 18 24 24 H 1.48499 * 109.46982 * 185.00166 * 22 20 18 25 25 H 1.48500 * 109.47331 * 305.00606 * 22 20 18 26 26 C 1.54264 * 110.03335 * 238.55679 * 2 1 3 27 27 H 1.08998 * 109.47022 * 300.06429 * 1 2 3 28 28 H 1.09008 * 109.46571 * 60.06091 * 1 2 3 29 29 H 1.08993 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47343 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47258 * 299.93733 * 3 2 1 32 32 H 1.08999 * 109.46830 * 59.93869 * 3 2 1 33 33 H 1.09005 * 110.03064 * 359.97438 * 4 2 1 34 34 H 1.08995 * 110.03371 * 238.57359 * 4 2 1 35 35 H 1.09001 * 110.48649 * 217.71424 * 5 4 2 36 36 H 1.09003 * 110.59378 * 95.12477 * 5 4 2 37 37 H 0.97001 * 120.00268 * 273.65222 * 8 6 5 38 38 H 1.07999 * 119.87865 * 0.02562 * 13 12 9 39 39 H 1.08004 * 119.74557 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.87447 * 179.97438 * 15 14 13 41 41 H 1.08004 * 120.12237 * 179.97438 * 16 15 14 42 42 H 0.96997 * 119.99747 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.49018 * 145.65386 * 26 2 1 44 44 H 1.08997 * 110.48678 * 23.00527 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0571 -0.7531 1.2341 5 6 2.8874 -1.9405 0.7045 6 6 2.3279 -2.1906 -0.7181 7 1 1.4047 -2.7682 -0.6741 8 7 3.3219 -2.8669 -1.5553 9 16 3.3171 -4.5185 -1.6755 10 8 4.3666 -4.8588 -2.5711 11 8 3.2366 -5.0172 -0.3473 12 6 1.8144 -4.9792 -2.4720 13 6 0.8730 -5.7210 -1.7951 14 6 -0.3097 -6.0853 -2.4195 15 6 -0.5591 -5.7075 -3.7301 16 6 0.3678 -4.9658 -4.4259 17 6 1.5696 -4.5853 -3.8003 18 6 2.5271 -3.8187 -4.5036 19 1 3.1752 -3.1408 -3.9681 20 6 2.6348 -3.9382 -5.8939 21 7 2.0247 -4.9142 -6.5158 22 14 3.6497 -2.7041 -6.8615 23 1 5.0781 -2.8254 -6.4737 24 1 3.5064 -2.9762 -8.3143 25 1 3.1715 -1.3296 -6.5658 26 6 2.0584 -0.7560 -1.2365 27 1 -0.3633 0.5148 0.8894 28 1 -0.3633 0.5129 -0.8906 29 1 -0.3633 -1.0276 0.0005 30 1 3.1438 1.4271 0.0005 31 1 1.6964 1.9545 -0.8905 32 1 1.6945 1.9551 0.8894 33 1 1.2228 -1.1181 1.8332 34 1 2.6866 -0.0946 1.8326 35 1 2.7400 -2.8192 1.3323 36 1 3.9445 -1.6787 0.6581 37 1 3.9827 -2.3473 -2.0392 38 1 1.0566 -6.0204 -0.7738 39 1 -1.0426 -6.6678 -1.8809 40 1 -1.4839 -5.9972 -4.2068 41 1 0.1717 -4.6729 -5.4468 42 1 2.0991 -4.9968 -7.4793 43 1 2.9811 -0.3009 -1.5964 44 1 1.3061 -0.7705 -2.0251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601383361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:36 Heat of formation + Delta-G solvation = -84.631966 kcal Electronic energy + Delta-G solvation = -26574.303036 eV Core-core repulsion = 23002.865644 eV Total energy + Delta-G solvation = -3571.437391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.11159 -37.58625 -36.16454 -34.79018 -34.32595 -33.84576 -30.56791 -30.17592 -29.56162 -27.84676 -27.28524 -25.53575 -23.95746 -21.65728 -21.17125 -20.55776 -18.97950 -18.35893 -17.67618 -16.86112 -16.20935 -15.74849 -15.35230 -15.00115 -14.43312 -14.31085 -13.82813 -13.61403 -13.32455 -13.25394 -13.16285 -13.08658 -12.74483 -12.16087 -12.06254 -11.90915 -11.57497 -11.50563 -11.44568 -11.28693 -11.14896 -11.06775 -10.98214 -10.83521 -10.70114 -10.68289 -10.53267 -10.47289 -10.41336 -10.18296 -9.90382 -9.43993 -9.38878 -8.71533 -8.03122 -7.59683 -7.02613 -4.75749 1.57602 2.34554 2.73904 2.95922 2.98652 3.12022 3.77497 3.94521 4.41181 4.58649 4.69201 4.81701 4.83060 5.26394 5.32041 5.39983 5.41754 5.50563 5.55710 5.62965 5.65270 5.77557 5.80750 5.92621 5.96262 6.00366 6.05222 6.13664 6.18219 6.23947 6.25908 6.28231 6.39950 6.45517 6.55732 6.68023 6.80355 6.94469 7.08822 7.31026 7.48906 7.57750 7.68916 7.80364 7.89488 8.28334 8.50697 8.64843 9.91285 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011193 B = 0.005656 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.904100 B = 4949.600180 C = 5629.441859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.142 4.142 6 C 0.157 3.843 7 H 0.091 0.909 8 N -1.114 6.114 9 S 2.698 3.302 10 O -0.966 6.966 11 O -0.996 6.996 12 C -0.774 4.774 13 C -0.004 4.004 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.157 4.157 17 C 0.189 3.811 18 C -0.448 4.448 19 H 0.087 0.913 20 C 0.081 3.919 21 N -0.777 5.777 22 Si 0.912 3.088 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.118 4.118 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.410 0.590 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.288 0.712 43 H 0.072 0.928 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 10.363 7.357 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.152 4.152 5 C -0.181 4.181 6 C 0.049 3.951 7 H 0.109 0.891 8 N -0.868 5.868 9 S 2.796 3.204 10 O -0.957 6.957 11 O -0.987 6.987 12 C -0.869 4.869 13 C -0.024 4.024 14 C -0.270 4.270 15 C -0.096 4.096 16 C -0.177 4.177 17 C 0.184 3.816 18 C -0.477 4.477 19 H 0.105 0.895 20 C -0.140 4.140 21 N -0.401 5.401 22 Si 0.736 3.264 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.105 9.588 7.528 12.240 hybrid contribution -0.098 0.660 -1.168 1.345 sum -1.204 10.249 6.360 12.121 Atomic orbital electron populations 1.21933 0.94329 1.02122 1.01343 1.21141 0.95596 0.95146 0.95245 1.21896 1.00747 0.95377 1.01369 1.22252 0.99456 0.96704 0.96764 1.22885 0.99891 0.98427 0.96918 1.21554 0.90857 0.93701 0.88975 0.89107 1.55713 1.43208 1.26925 1.61001 1.01149 0.74793 0.71704 0.72766 1.93543 1.55199 1.81359 1.65587 1.93448 1.88131 1.78687 1.38386 1.29917 1.23088 1.24782 1.09148 1.20267 0.92323 0.92716 0.97112 1.20490 0.99175 1.10783 0.96544 1.20897 0.97659 0.96753 0.94253 1.21469 0.93699 1.02378 1.00134 1.16982 0.90728 0.85772 0.88113 1.19794 1.14865 1.20539 0.92464 0.89537 1.25931 0.94879 0.95021 0.98145 1.69774 1.33647 1.25165 1.11481 0.86260 0.81179 0.80847 0.78157 1.18149 1.19917 1.18294 1.22745 1.01720 0.94153 0.97102 0.92947 0.92679 0.92198 0.92669 0.92781 0.92948 0.91615 0.91833 0.90579 0.91250 0.75643 0.87433 0.88760 0.88845 0.85965 0.90113 0.90915 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.14 37.16 0.30 -1.16 16 2 C -0.07 -0.77 0.94 -153.39 -0.14 -0.91 16 3 C -0.14 -1.29 8.16 37.16 0.30 -0.98 16 4 C -0.11 -1.25 6.11 -25.61 -0.16 -1.41 16 5 C -0.14 -1.91 6.51 -25.07 -0.16 -2.08 16 6 C 0.16 2.39 3.41 -65.93 -0.22 2.16 16 7 H 0.09 1.48 7.98 -51.93 -0.41 1.06 16 8 N -1.11 -19.34 4.72 -3.20 -0.02 -19.36 16 9 S 2.70 59.07 4.92 -107.50 -0.53 58.54 16 10 O -0.97 -24.26 16.66 -57.17 -0.95 -25.21 16 11 O -1.00 -22.50 16.73 -57.17 -0.96 -23.46 16 12 C -0.77 -18.45 5.84 -38.87 -0.23 -18.67 16 13 C 0.00 -0.10 9.54 -39.66 -0.38 -0.48 16 14 C -0.25 -5.43 10.05 -39.29 -0.39 -5.83 16 15 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 16 C -0.16 -3.86 8.65 -38.87 -0.34 -4.19 16 17 C 0.19 4.77 5.53 -106.83 -0.59 4.18 16 18 C -0.45 -11.13 7.62 -37.74 -0.29 -11.41 16 19 H 0.09 1.99 5.76 -52.48 -0.30 1.69 16 20 C 0.08 1.95 5.23 -17.34 -0.09 1.86 16 21 N -0.78 -19.14 10.96 55.55 0.61 -18.53 16 22 Si 0.91 17.86 29.58 -169.99 -5.03 12.83 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 26 C -0.12 -1.53 5.53 -25.07 -0.14 -1.67 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 34 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.41 6.36 8.43 -34.47 -0.29 6.07 16 38 H 0.11 2.26 7.33 -52.49 -0.38 1.87 16 39 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 3.03 6.33 -52.48 -0.33 2.69 16 42 H 0.29 6.39 8.30 -40.82 -0.34 6.06 16 43 H 0.07 0.88 7.73 -51.93 -0.40 0.48 16 44 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -29.73 362.47 -11.03 -40.76 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.69 Total: 11.69 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: -2.92 Total: -42.72 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.59 Total: -37.89 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -1.91 Total: -48.67 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 59.07 SS G_CDS: -0.53 Total: 58.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.73 -11.03 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.875 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds