Wall clock time and date at job start Tue Mar 31 2020 14:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.02167 * 2 1 4 4 C 1.53880 * 110.03195 * 121.39180 * 2 1 3 5 5 C 1.54268 * 106.60092 * 119.28086 * 4 2 1 6 6 C 1.54893 * 104.19406 * 336.39191 * 5 4 2 7 7 H 1.08990 * 110.75837 * 279.44287 * 6 5 4 8 8 N 1.46501 * 110.75476 * 156.25190 * 6 5 4 9 9 S 1.65599 * 119.99617 * 93.64884 * 8 6 5 10 10 O 1.42105 * 106.40291 * 178.69577 * 9 8 6 11 11 O 1.42098 * 106.40312 * 311.61516 * 9 8 6 12 12 C 1.76205 * 107.21765 * 65.15798 * 9 8 6 13 13 C 1.37642 * 120.12353 * 244.53268 * 12 9 8 14 14 C 1.38615 * 120.24334 * 180.02562 * 13 12 9 15 15 C 1.38657 * 120.50395 * 359.97438 * 14 13 12 16 16 C 1.37600 * 120.24616 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12786 * 64.25671 * 12 9 8 18 18 C 1.41390 * 120.24301 * 0.02562 * 17 12 9 19 19 H 1.08003 * 120.00308 * 330.11472 * 18 17 12 20 20 C 1.39952 * 120.00147 * 150.12008 * 18 17 12 21 21 N 1.30827 * 119.99764 * 348.08319 * 20 18 17 22 22 Si 1.86798 * 120.00129 * 168.07414 * 20 18 17 23 23 H 1.48507 * 109.46827 * 65.00493 * 22 20 18 24 24 H 1.48499 * 109.46982 * 185.00166 * 22 20 18 25 25 H 1.48500 * 109.47331 * 305.00606 * 22 20 18 26 26 C 1.54264 * 110.03335 * 238.55679 * 2 1 3 27 27 H 1.08998 * 109.47022 * 300.06429 * 1 2 3 28 28 H 1.09008 * 109.46571 * 60.06091 * 1 2 3 29 29 H 1.08993 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47343 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47258 * 299.93733 * 3 2 1 32 32 H 1.08999 * 109.46830 * 59.93869 * 3 2 1 33 33 H 1.09005 * 110.03064 * 359.97438 * 4 2 1 34 34 H 1.08995 * 110.03371 * 238.57359 * 4 2 1 35 35 H 1.09001 * 110.48649 * 217.71424 * 5 4 2 36 36 H 1.09003 * 110.59378 * 95.12477 * 5 4 2 37 37 H 0.97001 * 120.00268 * 273.65222 * 8 6 5 38 38 H 1.07999 * 119.87865 * 0.02562 * 13 12 9 39 39 H 1.08004 * 119.74557 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.87447 * 179.97438 * 15 14 13 41 41 H 1.08004 * 120.12237 * 179.97438 * 16 15 14 42 42 H 0.96997 * 119.99747 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.49018 * 145.65386 * 26 2 1 44 44 H 1.08997 * 110.48678 * 23.00527 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0571 -0.7531 1.2341 5 6 2.8874 -1.9405 0.7045 6 6 2.3279 -2.1906 -0.7181 7 1 1.4047 -2.7682 -0.6741 8 7 3.3219 -2.8669 -1.5553 9 16 3.3171 -4.5185 -1.6755 10 8 4.3666 -4.8588 -2.5711 11 8 3.2366 -5.0172 -0.3473 12 6 1.8144 -4.9792 -2.4720 13 6 0.8730 -5.7210 -1.7951 14 6 -0.3097 -6.0853 -2.4195 15 6 -0.5591 -5.7075 -3.7301 16 6 0.3678 -4.9658 -4.4259 17 6 1.5696 -4.5853 -3.8003 18 6 2.5271 -3.8187 -4.5036 19 1 3.1752 -3.1408 -3.9681 20 6 2.6348 -3.9382 -5.8939 21 7 2.0247 -4.9142 -6.5158 22 14 3.6497 -2.7041 -6.8615 23 1 5.0781 -2.8254 -6.4737 24 1 3.5064 -2.9762 -8.3143 25 1 3.1715 -1.3296 -6.5658 26 6 2.0584 -0.7560 -1.2365 27 1 -0.3633 0.5148 0.8894 28 1 -0.3633 0.5129 -0.8906 29 1 -0.3633 -1.0276 0.0005 30 1 3.1438 1.4271 0.0005 31 1 1.6964 1.9545 -0.8905 32 1 1.6945 1.9551 0.8894 33 1 1.2228 -1.1181 1.8332 34 1 2.6866 -0.0946 1.8326 35 1 2.7400 -2.8192 1.3323 36 1 3.9445 -1.6787 0.6581 37 1 3.9827 -2.3473 -2.0392 38 1 1.0566 -6.0204 -0.7738 39 1 -1.0426 -6.6678 -1.8809 40 1 -1.4839 -5.9972 -4.2068 41 1 0.1717 -4.6729 -5.4468 42 1 2.0991 -4.9968 -7.4793 43 1 2.9811 -0.3009 -1.5964 44 1 1.3061 -0.7705 -2.0251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601383361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:35 Heat of formation + Delta-G solvation = -101.999916 kcal Electronic energy + Delta-G solvation = -26575.056166 eV Core-core repulsion = 23002.865644 eV Total energy + Delta-G solvation = -3572.190522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.13314 -39.37629 -37.99424 -36.64699 -35.73863 -35.45604 -32.06026 -31.57048 -31.35328 -28.92691 -28.07234 -27.34921 -24.95516 -23.44613 -22.96156 -21.74895 -20.43108 -19.59238 -19.37442 -18.50911 -17.86734 -17.27474 -17.01005 -16.12142 -16.05193 -15.95058 -15.11791 -14.96834 -14.76515 -14.59789 -14.46024 -14.20144 -14.05557 -13.72781 -13.34341 -13.23382 -13.06735 -12.99016 -12.92479 -12.84308 -12.76993 -12.74828 -12.48402 -12.32497 -12.17233 -12.01079 -11.69505 -11.66009 -11.36827 -11.32247 -11.23323 -11.16978 -11.08627 -10.16078 -9.84053 -9.43029 -8.79418 -6.61287 -0.14371 0.53033 0.97190 1.36072 1.47587 1.52216 2.15720 2.35520 2.63702 2.99598 3.46552 3.65125 3.69018 3.84275 3.94068 4.28303 4.32231 4.40212 4.43496 4.49343 4.56257 4.61312 4.67889 4.71693 4.78022 4.91682 4.97704 5.00719 5.07514 5.11555 5.13771 5.21601 5.25110 5.28712 5.29830 5.46024 5.49961 5.51827 5.56407 5.65349 5.70306 5.81514 5.99361 6.08118 6.26610 6.46880 6.67945 6.82994 8.17445 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011193 B = 0.005656 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.904100 B = 4949.600180 C = 5629.441859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.108 4.108 5 C -0.141 4.141 6 C 0.146 3.854 7 H 0.075 0.925 8 N -1.102 6.102 9 S 2.717 3.283 10 O -1.003 7.003 11 O -1.006 7.006 12 C -0.792 4.792 13 C -0.018 4.018 14 C -0.249 4.249 15 C -0.076 4.076 16 C -0.184 4.184 17 C 0.164 3.836 18 C -0.477 4.477 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.810 5.810 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.263 1.263 25 H -0.243 1.243 26 C -0.116 4.116 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.420 0.580 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.295 0.705 43 H 0.082 0.918 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 12.217 8.178 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.191 4.191 4 C -0.146 4.146 5 C -0.181 4.181 6 C 0.039 3.961 7 H 0.093 0.907 8 N -0.861 5.861 9 S 2.813 3.187 10 O -0.993 6.993 11 O -0.996 6.996 12 C -0.885 4.885 13 C -0.038 4.038 14 C -0.269 4.269 15 C -0.094 4.094 16 C -0.204 4.204 17 C 0.160 3.840 18 C -0.505 4.505 19 H 0.112 0.888 20 C -0.179 4.179 21 N -0.434 5.434 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.187 1.187 25 H -0.166 1.166 26 C -0.155 4.155 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.255 0.745 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.363 11.433 8.351 14.224 hybrid contribution -0.098 0.016 -1.332 1.335 sum -1.461 11.449 7.020 13.509 Atomic orbital electron populations 1.21940 0.94087 1.01508 1.02238 1.21131 0.95801 0.95950 0.93893 1.21870 1.00967 0.94032 1.02196 1.22243 0.99519 0.95863 0.96945 1.22870 1.00757 0.99099 0.95339 1.21806 0.89792 0.94546 0.89996 0.90683 1.55334 1.43962 1.25334 1.61422 1.00444 0.73645 0.72639 0.71950 1.93486 1.56440 1.82785 1.66602 1.93425 1.88044 1.79680 1.38454 1.30211 1.23958 1.25159 1.09213 1.20586 0.92706 0.92617 0.97869 1.20891 0.99439 1.10169 0.96441 1.21245 0.98191 0.95491 0.94501 1.21534 0.94531 1.04156 1.00199 1.17298 0.91347 0.86459 0.88912 1.20106 1.15554 1.21358 0.93481 0.88793 1.26813 0.95835 0.96508 0.98742 1.69820 1.34944 1.26491 1.12135 0.85357 0.78995 0.79176 0.77172 1.18692 1.18711 1.16576 1.22757 1.02008 0.92830 0.97879 0.91261 0.92609 0.93588 0.92294 0.92619 0.91516 0.91127 0.89889 0.92011 0.90547 0.74460 0.86091 0.85491 0.85950 0.86982 0.89421 0.89897 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.14 71.98 0.59 -2.12 16 2 C -0.07 -1.32 0.94 -51.46 -0.05 -1.37 16 3 C -0.13 -2.11 8.16 71.98 0.59 -1.52 16 4 C -0.11 -2.13 6.11 31.32 0.19 -1.94 16 5 C -0.14 -3.65 6.51 31.67 0.21 -3.44 16 6 C 0.15 4.38 3.41 46.29 0.16 4.54 16 7 H 0.08 2.49 7.98 -2.39 -0.02 2.47 16 8 N -1.10 -38.35 4.72 -164.03 -0.77 -39.13 16 9 S 2.72 120.76 4.92 -56.49 -0.28 120.48 16 10 O -1.00 -51.46 16.66 -128.00 -2.13 -53.59 16 11 O -1.01 -45.73 16.73 -128.00 -2.14 -47.87 16 12 C -0.79 -38.37 5.84 22.73 0.13 -38.24 16 13 C -0.02 -0.82 9.54 22.22 0.21 -0.61 16 14 C -0.25 -10.57 10.05 22.46 0.23 -10.35 16 15 C -0.08 -3.33 10.02 22.22 0.22 -3.11 16 16 C -0.18 -9.24 8.65 22.73 0.20 -9.04 16 17 C 0.16 8.50 5.53 -21.29 -0.12 8.38 16 18 C -0.48 -24.19 7.62 23.46 0.18 -24.01 16 19 H 0.09 4.41 5.76 -2.91 -0.02 4.39 16 20 C 0.04 1.88 5.23 85.26 0.45 2.33 16 21 N -0.81 -40.71 10.96 21.83 0.24 -40.47 16 22 Si 0.97 36.41 29.58 68.60 2.03 38.44 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 25 H -0.24 -8.34 7.11 99.48 0.71 -7.64 16 26 C -0.12 -2.86 5.53 31.67 0.18 -2.69 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.34 7.67 -2.38 -0.02 1.32 16 34 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.42 12.94 8.43 -96.74 -0.82 12.12 16 38 H 0.12 5.03 7.33 -2.91 -0.02 5.01 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.11 5.74 6.33 -2.91 -0.02 5.72 16 42 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 43 H 0.08 1.87 7.73 -2.39 -0.02 1.85 16 44 H 0.06 1.75 7.84 -2.39 -0.02 1.73 16 Total: -1.00 -64.46 362.47 0.48 -63.99 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: 0.18 Total: 41.33 kcal Atomic # 6 Polarization: -86.52 SS G_CDS: 3.35 Total: -83.17 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -0.54 Total: -79.59 kcal Atomic # 8 Polarization: -97.19 SS G_CDS: -4.27 Total: -101.46 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 120.76 SS G_CDS: -0.28 Total: 120.48 kcal Total: -64.46 0.48 -63.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.015 kcal (2) G-P(sol) polarization free energy of solvation -64.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds