Wall clock time and date at job start Tue Mar 31 2020 13:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00174 * 2 1 4 4 C 1.53782 * 113.61255 * 39.13488 * 3 2 1 5 5 C 1.53955 * 87.01732 * 220.04856 * 4 3 2 6 6 C 1.52996 * 113.53857 * 270.81196 * 5 4 3 7 7 C 1.53001 * 113.74263 * 139.94167 * 5 4 3 8 8 C 1.53779 * 87.11316 * 25.36401 * 5 4 3 9 9 S 1.65603 * 119.99570 * 179.97438 * 2 1 3 10 10 O 1.42093 * 106.40704 * 345.27654 * 9 2 1 11 11 O 1.42103 * 106.39980 * 212.35400 * 9 2 1 12 12 C 1.76198 * 107.21455 * 98.81963 * 9 2 1 13 13 C 1.37643 * 120.12899 * 114.51274 * 12 9 2 14 14 C 1.38613 * 120.24733 * 180.31831 * 13 12 9 15 15 C 1.38655 * 120.50012 * 359.67288 * 14 13 12 16 16 C 1.37589 * 120.25035 * 359.97438 * 15 14 13 17 17 C 1.40699 * 120.12872 * 294.20467 * 12 9 2 18 18 C 1.41395 * 120.24049 * 359.97438 * 17 12 9 19 19 H 1.07996 * 120.00214 * 328.92271 * 18 17 12 20 20 C 1.39942 * 119.99705 * 148.92332 * 18 17 12 21 21 N 1.30827 * 119.99940 * 337.90794 * 20 18 17 22 22 Si 1.86798 * 120.00157 * 157.91106 * 20 18 17 23 23 H 1.48507 * 109.47399 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46833 * 299.99514 * 22 20 18 25 25 H 1.48496 * 109.47485 * 59.99714 * 22 20 18 26 26 H 1.09002 * 109.47477 * 268.62086 * 1 2 3 27 27 H 1.09003 * 109.46923 * 28.62721 * 1 2 3 28 28 H 1.09007 * 109.47094 * 148.62284 * 1 2 3 29 29 H 1.08997 * 112.84775 * 170.32722 * 3 2 1 30 30 H 1.09002 * 113.61385 * 334.56667 * 4 3 2 31 31 H 1.08993 * 113.61844 * 105.47140 * 4 3 2 32 32 H 1.09000 * 109.47547 * 157.49772 * 6 5 4 33 33 H 1.09005 * 109.46964 * 277.49523 * 6 5 4 34 34 H 1.08995 * 109.47191 * 37.48990 * 6 5 4 35 35 H 1.08997 * 109.47607 * 322.40394 * 7 5 4 36 36 H 1.09004 * 109.47104 * 82.40450 * 7 5 4 37 37 H 1.09000 * 109.47219 * 202.40254 * 7 5 4 38 38 H 1.08998 * 113.61260 * 220.09136 * 8 5 4 39 39 H 1.09002 * 113.61898 * 89.18453 * 8 5 4 40 40 H 1.08003 * 119.87793 * 0.02562 * 13 12 9 41 41 H 1.08003 * 119.74717 * 179.68680 * 14 13 12 42 42 H 1.08008 * 119.87269 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.12763 * 180.02562 * 16 15 14 44 44 H 0.96995 * 120.00148 * 353.77055 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.5590 2.3486 0.8893 5 6 1.9075 3.3556 -0.2219 6 6 3.2969 3.9777 -0.0690 7 6 0.8150 4.3966 -0.4746 8 6 1.8674 2.1706 -1.2011 9 16 2.2929 -1.4342 0.0006 10 8 1.3518 -2.4407 0.3475 11 8 3.4908 -1.2057 0.7301 12 6 2.7771 -1.7576 -1.6624 13 6 4.1104 -1.7689 -2.0040 14 6 4.4938 -2.0165 -3.3128 15 6 3.5417 -2.2619 -4.2905 16 6 2.2036 -2.2626 -3.9704 17 6 1.8026 -2.0116 -2.6450 18 6 0.4303 -2.0095 -2.3042 19 1 0.1189 -2.3126 -1.3156 20 6 -0.5243 -1.6146 -3.2482 21 7 -0.1736 -0.8578 -4.2561 22 14 -2.2995 -2.1679 -3.0691 23 1 -3.1045 -1.6194 -4.1900 24 1 -2.3606 -3.6515 -3.0962 25 1 -2.8444 -1.6735 -1.7793 26 1 -0.3634 -0.0247 1.0274 27 1 -0.3633 0.9021 -0.4924 28 1 -0.3634 -0.8774 -0.5351 29 1 3.2667 1.1401 0.1688 30 1 0.4874 2.2150 1.0372 31 1 2.0975 2.5215 1.8210 32 1 3.6396 4.3438 -1.0368 33 1 3.2480 4.8071 0.6366 34 1 3.9929 3.2255 0.3023 35 1 -0.1639 3.9271 -0.3772 36 1 0.9055 5.2025 0.2537 37 1 0.9250 4.8018 -1.4805 38 1 2.6547 2.1999 -1.9544 39 1 0.8803 1.9881 -1.6258 40 1 4.8605 -1.5795 -1.2504 41 1 5.5420 -2.0185 -3.5729 42 1 3.8518 -2.4541 -5.3072 43 1 1.4638 -2.4544 -4.7334 44 1 0.7253 -0.4961 -4.3012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601437449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:04 Heat of formation + Delta-G solvation = -48.353895 kcal Electronic energy + Delta-G solvation = -27191.963213 eV Core-core repulsion = 23622.098957 eV Total energy + Delta-G solvation = -3569.864256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.72496 -37.86628 -36.40329 -34.95139 -34.55414 -34.01679 -30.22848 -29.66101 -29.46071 -27.39846 -26.13704 -25.49104 -25.18315 -21.90166 -21.39800 -21.09850 -18.47754 -18.01719 -18.00826 -17.12312 -16.14022 -15.65330 -15.04808 -14.72459 -14.59292 -14.29840 -14.10484 -13.76025 -13.34178 -13.19117 -13.05406 -12.75587 -12.65568 -12.62201 -12.39267 -11.89932 -11.81059 -11.60646 -11.46243 -11.30308 -11.25773 -11.17754 -11.04575 -10.99262 -10.88857 -10.56813 -10.53293 -10.48928 -10.00654 -9.88868 -9.74697 -9.37270 -9.20780 -8.36160 -8.19003 -7.82204 -7.45961 -4.87516 1.45428 2.20645 2.62261 3.05327 3.13583 3.26367 3.79306 3.83418 4.30632 4.56896 4.68376 4.72669 4.90217 5.07976 5.13247 5.32800 5.36921 5.46368 5.64850 5.67320 5.73597 5.87405 5.89463 5.93088 6.01511 6.03032 6.05516 6.08012 6.09897 6.15893 6.25910 6.32102 6.41382 6.47517 6.55298 6.61424 6.85606 6.88201 7.14021 7.21659 7.27860 7.40262 7.56291 7.65142 7.80660 7.96279 8.37041 8.56871 9.77367 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.006729 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.357928 B = 4160.175459 C = 4966.049182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.981 5.981 3 C 0.132 3.868 4 C -0.136 4.136 5 C -0.092 4.092 6 C -0.129 4.129 7 C -0.130 4.130 8 C -0.140 4.140 9 S 2.704 3.296 10 O -0.973 6.973 11 O -0.997 6.997 12 C -0.777 4.777 13 C 0.010 3.990 14 C -0.259 4.259 15 C -0.057 4.057 16 C -0.208 4.208 17 C 0.174 3.826 18 C -0.531 4.531 19 H 0.116 0.884 20 C 0.045 3.955 21 N -0.779 5.779 22 Si 1.056 2.944 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.267 1.267 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 8.385 4.170 9.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.815 5.815 3 C 0.025 3.975 4 C -0.175 4.175 5 C -0.092 4.092 6 C -0.186 4.186 7 C -0.188 4.188 8 C -0.179 4.179 9 S 2.803 3.197 10 O -0.964 6.964 11 O -0.988 6.988 12 C -0.872 4.872 13 C -0.010 4.010 14 C -0.280 4.280 15 C -0.076 4.076 16 C -0.227 4.227 17 C 0.170 3.830 18 C -0.558 4.558 19 H 0.134 0.866 20 C -0.180 4.180 21 N -0.400 5.400 22 Si 0.878 3.122 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.192 1.192 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.127 0.873 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.505 7.949 4.170 9.102 hybrid contribution 1.746 0.069 -0.343 1.781 sum 0.241 8.018 3.827 8.888 Atomic orbital electron populations 1.21744 0.78717 1.04786 1.00650 1.57240 1.14702 1.20320 1.89272 1.22240 0.96396 0.82210 0.96621 1.23521 1.01721 0.95075 0.97198 1.21709 0.95854 0.94084 0.97581 1.21617 0.94962 1.00423 1.01628 1.21673 0.97771 0.98123 1.01213 1.23523 1.03146 0.94361 0.96875 1.01022 0.72057 0.72132 0.74533 1.93466 1.62724 1.56174 1.83991 1.93431 1.47839 1.85788 1.71743 1.29911 1.00825 1.33061 1.23408 1.20323 0.93577 0.91374 0.95698 1.20469 0.97481 1.16291 0.93734 1.20845 0.93730 0.95811 0.97199 1.21348 0.94853 1.09020 0.97513 1.17007 0.91773 0.83858 0.90403 1.21436 0.91434 1.39028 1.03903 0.86616 1.27081 1.07253 0.92748 0.90876 1.70456 1.24563 1.18289 1.26737 0.83766 0.72549 0.78065 0.77821 1.19627 1.19471 1.19186 0.94046 0.91760 0.88345 0.86872 0.89368 0.91329 0.92387 0.92611 0.92216 0.92556 0.92975 0.92674 0.91281 0.89093 0.87352 0.88499 0.88632 0.87259 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 8.56 59.85 0.51 2.01 16 2 N -0.98 -18.36 3.37 -113.74 -0.38 -18.75 16 3 C 0.13 2.14 3.91 -67.12 -0.26 1.88 16 4 C -0.14 -1.79 6.65 -25.83 -0.17 -1.97 16 5 C -0.09 -1.12 1.39 -153.61 -0.21 -1.34 16 6 C -0.13 -1.41 9.07 37.16 0.34 -1.08 16 7 C -0.13 -1.41 9.20 37.16 0.34 -1.07 16 8 C -0.14 -2.11 6.76 -25.92 -0.18 -2.28 16 9 S 2.70 59.96 5.07 -107.50 -0.54 59.41 16 10 O -0.97 -23.69 14.67 -57.17 -0.84 -24.53 16 11 O -1.00 -22.86 15.87 -57.17 -0.91 -23.77 16 12 C -0.78 -18.40 5.97 -38.87 -0.23 -18.63 16 13 C 0.01 0.23 9.53 -39.66 -0.38 -0.15 16 14 C -0.26 -5.56 10.05 -39.29 -0.39 -5.95 16 15 C -0.06 -1.24 10.02 -39.66 -0.40 -1.64 16 16 C -0.21 -4.96 7.93 -38.88 -0.31 -5.27 16 17 C 0.17 4.31 5.20 -106.82 -0.56 3.76 16 18 C -0.53 -12.80 6.31 -37.74 -0.24 -13.04 16 19 H 0.12 2.83 4.04 -52.49 -0.21 2.62 16 20 C 0.04 1.02 4.98 -17.34 -0.09 0.93 16 21 N -0.78 -18.44 12.46 55.55 0.69 -17.75 16 22 Si 1.06 19.91 29.99 -169.99 -5.10 14.81 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.27 -4.66 7.11 56.52 0.40 -4.25 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.99 6.27 -51.93 -0.33 0.67 16 28 H 0.10 1.92 4.26 -51.93 -0.22 1.70 16 29 H 0.11 1.88 6.82 -51.93 -0.35 1.52 16 30 H 0.09 1.13 6.62 -51.93 -0.34 0.78 16 31 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.67 7.34 -51.93 -0.38 0.29 16 35 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.09 1.46 6.79 -51.93 -0.35 1.11 16 40 H 0.11 2.26 7.32 -52.48 -0.38 1.87 16 41 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.11 2.64 6.79 -52.49 -0.36 2.28 16 44 H 0.30 7.34 6.68 -40.82 -0.27 7.07 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -27.77 352.19 -10.21 -37.98 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.21 Total: 11.12 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: -2.22 Total: -43.83 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.31 Total: -36.50 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -1.75 Total: -48.30 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.10 Total: 14.81 kcal Atomic # 16 Polarization: 59.96 SS G_CDS: -0.54 Total: 59.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.77 -10.21 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601437449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.377 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds