Wall clock time and date at job start Tue Mar 31 2020 13:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00174 * 2 1 4 4 C 1.53782 * 113.61255 * 39.13488 * 3 2 1 5 5 C 1.53955 * 87.01732 * 220.04856 * 4 3 2 6 6 C 1.52996 * 113.53857 * 270.81196 * 5 4 3 7 7 C 1.53001 * 113.74263 * 139.94167 * 5 4 3 8 8 C 1.53779 * 87.11316 * 25.36401 * 5 4 3 9 9 S 1.65603 * 119.99570 * 179.97438 * 2 1 3 10 10 O 1.42093 * 106.40704 * 345.27654 * 9 2 1 11 11 O 1.42103 * 106.39980 * 212.35400 * 9 2 1 12 12 C 1.76198 * 107.21455 * 98.81963 * 9 2 1 13 13 C 1.37643 * 120.12899 * 114.51274 * 12 9 2 14 14 C 1.38613 * 120.24733 * 180.31831 * 13 12 9 15 15 C 1.38655 * 120.50012 * 359.67288 * 14 13 12 16 16 C 1.37589 * 120.25035 * 359.97438 * 15 14 13 17 17 C 1.40699 * 120.12872 * 294.20467 * 12 9 2 18 18 C 1.41395 * 120.24049 * 359.97438 * 17 12 9 19 19 H 1.07996 * 120.00214 * 328.92271 * 18 17 12 20 20 C 1.39942 * 119.99705 * 148.92332 * 18 17 12 21 21 N 1.30827 * 119.99940 * 337.90794 * 20 18 17 22 22 Si 1.86798 * 120.00157 * 157.91106 * 20 18 17 23 23 H 1.48507 * 109.47399 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46833 * 299.99514 * 22 20 18 25 25 H 1.48496 * 109.47485 * 59.99714 * 22 20 18 26 26 H 1.09002 * 109.47477 * 268.62086 * 1 2 3 27 27 H 1.09003 * 109.46923 * 28.62721 * 1 2 3 28 28 H 1.09007 * 109.47094 * 148.62284 * 1 2 3 29 29 H 1.08997 * 112.84775 * 170.32722 * 3 2 1 30 30 H 1.09002 * 113.61385 * 334.56667 * 4 3 2 31 31 H 1.08993 * 113.61844 * 105.47140 * 4 3 2 32 32 H 1.09000 * 109.47547 * 157.49772 * 6 5 4 33 33 H 1.09005 * 109.46964 * 277.49523 * 6 5 4 34 34 H 1.08995 * 109.47191 * 37.48990 * 6 5 4 35 35 H 1.08997 * 109.47607 * 322.40394 * 7 5 4 36 36 H 1.09004 * 109.47104 * 82.40450 * 7 5 4 37 37 H 1.09000 * 109.47219 * 202.40254 * 7 5 4 38 38 H 1.08998 * 113.61260 * 220.09136 * 8 5 4 39 39 H 1.09002 * 113.61898 * 89.18453 * 8 5 4 40 40 H 1.08003 * 119.87793 * 0.02562 * 13 12 9 41 41 H 1.08003 * 119.74717 * 179.68680 * 14 13 12 42 42 H 1.08008 * 119.87269 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.12763 * 180.02562 * 16 15 14 44 44 H 0.96995 * 120.00148 * 353.77055 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.5590 2.3486 0.8893 5 6 1.9075 3.3556 -0.2219 6 6 3.2969 3.9777 -0.0690 7 6 0.8150 4.3966 -0.4746 8 6 1.8674 2.1706 -1.2011 9 16 2.2929 -1.4342 0.0006 10 8 1.3518 -2.4407 0.3475 11 8 3.4908 -1.2057 0.7301 12 6 2.7771 -1.7576 -1.6624 13 6 4.1104 -1.7689 -2.0040 14 6 4.4938 -2.0165 -3.3128 15 6 3.5417 -2.2619 -4.2905 16 6 2.2036 -2.2626 -3.9704 17 6 1.8026 -2.0116 -2.6450 18 6 0.4303 -2.0095 -2.3042 19 1 0.1189 -2.3126 -1.3156 20 6 -0.5243 -1.6146 -3.2482 21 7 -0.1736 -0.8578 -4.2561 22 14 -2.2995 -2.1679 -3.0691 23 1 -3.1045 -1.6194 -4.1900 24 1 -2.3606 -3.6515 -3.0962 25 1 -2.8444 -1.6735 -1.7793 26 1 -0.3634 -0.0247 1.0274 27 1 -0.3633 0.9021 -0.4924 28 1 -0.3634 -0.8774 -0.5351 29 1 3.2667 1.1401 0.1688 30 1 0.4874 2.2150 1.0372 31 1 2.0975 2.5215 1.8210 32 1 3.6396 4.3438 -1.0368 33 1 3.2480 4.8071 0.6366 34 1 3.9929 3.2255 0.3023 35 1 -0.1639 3.9271 -0.3772 36 1 0.9055 5.2025 0.2537 37 1 0.9250 4.8018 -1.4805 38 1 2.6547 2.1999 -1.9544 39 1 0.8803 1.9881 -1.6258 40 1 4.8605 -1.5795 -1.2504 41 1 5.5420 -2.0185 -3.5729 42 1 3.8518 -2.4541 -5.3072 43 1 1.4638 -2.4544 -4.7334 44 1 0.7253 -0.4961 -4.3012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601437449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:03 Heat of formation + Delta-G solvation = -63.176178 kcal Electronic energy + Delta-G solvation = -27192.605955 eV Core-core repulsion = 23622.098957 eV Total energy + Delta-G solvation = -3570.506998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87292 -39.63857 -38.21017 -36.76561 -36.05943 -35.62717 -31.99725 -31.29120 -30.70884 -28.27380 -27.61201 -26.87950 -26.61252 -23.63778 -23.05928 -22.51377 -20.21891 -19.64046 -19.16958 -18.66629 -17.87454 -17.18848 -16.73045 -16.28592 -15.84104 -15.69531 -15.49974 -15.33818 -15.03742 -14.52592 -14.34167 -14.21498 -14.14310 -13.74277 -13.70912 -13.52457 -13.25414 -13.07659 -13.00481 -12.83158 -12.78964 -12.72989 -12.41505 -12.39696 -12.25385 -12.17173 -11.94472 -11.62563 -11.58729 -11.11924 -11.02756 -10.97522 -10.93739 -10.05280 -9.71221 -9.63016 -9.26786 -6.70460 -0.24995 0.40972 0.85126 1.51190 1.60851 1.79477 2.19003 2.26778 2.57370 2.92607 3.31763 3.52937 3.56527 3.69440 3.85297 3.94970 4.06540 4.19311 4.30701 4.36222 4.53641 4.59864 4.68098 4.74320 4.79089 4.80009 4.88147 4.92295 4.94990 4.99766 5.05990 5.08831 5.14216 5.20899 5.26186 5.33383 5.35895 5.48383 5.50555 5.57482 5.68078 5.75519 5.83024 5.86847 5.99949 6.16928 6.57531 6.77216 7.94841 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.006729 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.357928 B = 4160.175459 C = 4966.049182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.976 5.976 3 C 0.115 3.885 4 C -0.126 4.126 5 C -0.078 4.078 6 C -0.130 4.130 7 C -0.128 4.128 8 C -0.143 4.143 9 S 2.714 3.286 10 O -1.000 7.000 11 O -1.009 7.009 12 C -0.795 4.795 13 C -0.005 4.005 14 C -0.258 4.258 15 C -0.056 4.056 16 C -0.231 4.231 17 C 0.152 3.848 18 C -0.546 4.546 19 H 0.109 0.891 20 C 0.022 3.978 21 N -0.792 5.792 22 Si 1.090 2.910 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.243 1.243 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 9.921 4.760 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.813 5.813 3 C 0.009 3.991 4 C -0.166 4.166 5 C -0.079 4.079 6 C -0.187 4.187 7 C -0.186 4.186 8 C -0.182 4.182 9 S 2.812 3.188 10 O -0.990 6.990 11 O -0.999 6.999 12 C -0.889 4.889 13 C -0.025 4.025 14 C -0.278 4.278 15 C -0.074 4.074 16 C -0.251 4.251 17 C 0.147 3.853 18 C -0.573 4.573 19 H 0.126 0.874 20 C -0.198 4.198 21 N -0.413 5.413 22 Si 0.907 3.093 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.167 1.167 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.117 0.883 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.652 9.486 4.754 10.738 hybrid contribution 1.927 -0.399 -0.539 2.040 sum 0.275 9.087 4.216 10.021 Atomic orbital electron populations 1.21846 0.77839 1.04645 1.02041 1.57018 1.15211 1.19979 1.89073 1.22575 0.96213 0.81637 0.98704 1.23517 1.02065 0.93411 0.97559 1.21677 0.97279 0.93527 0.95386 1.21646 0.93828 1.00832 1.02401 1.21663 0.96958 0.98079 1.01867 1.23507 1.01905 0.96075 0.96747 1.00571 0.71711 0.72555 0.73933 1.93419 1.63305 1.58029 1.84276 1.93403 1.48543 1.86171 1.71830 1.30235 1.01413 1.33199 1.24025 1.20643 0.93537 0.91525 0.96807 1.20878 0.99131 1.14628 0.93119 1.21201 0.92935 0.94395 0.98884 1.21388 0.95800 1.10700 0.97218 1.17303 0.92487 0.84409 0.91109 1.21482 0.91752 1.40029 1.04058 0.87382 1.28133 1.09906 0.91811 0.89974 1.70544 1.23849 1.19425 1.27477 0.83374 0.69103 0.77781 0.79059 1.19096 1.19447 1.16682 0.91722 0.89981 0.90509 0.87628 0.88604 0.89971 0.92102 0.90538 0.92901 0.92641 0.91056 0.92630 0.92509 0.90364 0.86098 0.85231 0.85599 0.88315 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.76 8.56 127.77 1.09 3.85 16 2 N -0.98 -36.44 3.37 -513.75 -1.73 -38.17 16 3 C 0.11 3.65 3.91 45.52 0.18 3.83 16 4 C -0.13 -3.06 6.65 31.18 0.21 -2.86 16 5 C -0.08 -1.75 1.39 -51.60 -0.07 -1.82 16 6 C -0.13 -2.55 9.07 71.98 0.65 -1.90 16 7 C -0.13 -2.43 9.20 71.98 0.66 -1.77 16 8 C -0.14 -4.25 6.76 31.12 0.21 -4.04 16 9 S 2.71 121.97 5.07 -56.49 -0.29 121.68 16 10 O -1.00 -49.66 14.67 -128.00 -1.88 -51.54 16 11 O -1.01 -46.48 15.87 -128.00 -2.03 -48.51 16 12 C -0.80 -38.26 5.97 22.73 0.14 -38.13 16 13 C -0.01 -0.24 9.53 22.22 0.21 -0.03 16 14 C -0.26 -10.70 10.05 22.46 0.23 -10.47 16 15 C -0.06 -2.38 10.02 22.22 0.22 -2.16 16 16 C -0.23 -11.25 7.93 22.73 0.18 -11.07 16 17 C 0.15 7.67 5.20 -21.29 -0.11 7.56 16 18 C -0.55 -26.96 6.31 23.46 0.15 -26.81 16 19 H 0.11 5.44 4.04 -2.91 -0.01 5.43 16 20 C 0.02 1.02 4.98 85.26 0.42 1.45 16 21 N -0.79 -38.17 12.46 21.83 0.27 -37.90 16 22 Si 1.09 39.74 29.99 68.60 2.06 41.79 16 23 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 24 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.24 -7.89 7.11 99.48 0.71 -7.19 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 2.46 6.27 -2.39 -0.01 2.45 16 28 H 0.08 3.01 4.26 -2.38 -0.01 3.00 16 29 H 0.11 3.49 6.82 -2.39 -0.02 3.48 16 30 H 0.10 2.19 6.62 -2.39 -0.02 2.18 16 31 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.05 1.11 7.34 -2.39 -0.02 1.09 16 35 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 39 H 0.08 2.52 6.79 -2.39 -0.02 2.50 16 40 H 0.12 4.99 7.32 -2.91 -0.02 4.97 16 41 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 42 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.10 4.91 6.79 -2.91 -0.02 4.89 16 44 H 0.29 14.53 6.68 -92.71 -0.62 13.91 16 Total: -1.00 -60.21 352.19 1.93 -58.28 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: 1.16 Total: 38.75 kcal Atomic # 6 Polarization: -88.74 SS G_CDS: 4.37 Total: -84.37 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.46 Total: -76.07 kcal Atomic # 8 Polarization: -96.15 SS G_CDS: -3.91 Total: -100.06 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.06 Total: 41.79 kcal Atomic # 16 Polarization: 121.97 SS G_CDS: -0.29 Total: 121.68 kcal Total: -60.21 1.93 -58.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601437449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.894 kcal (2) G-P(sol) polarization free energy of solvation -60.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds