Wall clock time and date at job start Tue Mar 31 2020 14:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00033 * 2 1 4 4 C 1.53003 * 109.47128 * 276.86726 * 3 2 1 5 5 H 1.08993 * 115.54680 * 330.72080 * 4 3 2 6 6 C 1.53003 * 117.49549 * 116.38815 * 4 3 2 7 7 C 1.53001 * 117.49845 * 185.01145 * 4 3 2 8 8 C 1.53006 * 117.49898 * 359.97438 * 7 4 3 9 9 C 1.52996 * 117.49780 * 145.02459 * 7 4 3 10 10 S 1.65601 * 120.00342 * 180.02562 * 2 1 3 11 11 O 1.42094 * 106.40417 * 164.20366 * 10 2 1 12 12 O 1.42098 * 106.39868 * 31.27954 * 10 2 1 13 13 C 1.76199 * 107.21624 * 277.74324 * 10 2 1 14 14 C 1.37639 * 120.12959 * 113.57303 * 13 10 2 15 15 C 1.38611 * 120.25065 * 179.97438 * 14 13 10 16 16 C 1.38660 * 120.50336 * 0.02562 * 15 14 13 17 17 C 1.37600 * 120.24268 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12698 * 293.55156 * 13 10 2 19 19 C 1.41396 * 120.24654 * 0.02562 * 18 13 10 20 20 H 1.08003 * 119.99758 * 325.17137 * 19 18 13 21 21 C 1.39941 * 120.00115 * 145.17255 * 19 18 13 22 22 N 1.30830 * 119.99929 * 168.79902 * 21 19 18 23 23 Si 1.86793 * 120.00164 * 348.78879 * 21 19 18 24 24 H 1.48511 * 109.47084 * 89.30341 * 23 21 19 25 25 H 1.48504 * 109.47463 * 209.30080 * 23 21 19 26 26 H 1.48506 * 109.47408 * 329.30587 * 23 21 19 27 27 H 1.09011 * 109.47187 * 269.99902 * 1 2 3 28 28 H 1.08996 * 109.47399 * 29.99597 * 1 2 3 29 29 H 1.08997 * 109.47139 * 150.00123 * 1 2 3 30 30 H 1.09008 * 109.46778 * 36.86508 * 3 2 1 31 31 H 1.08991 * 109.47289 * 156.86597 * 3 2 1 32 32 H 1.09002 * 117.49596 * 214.97522 * 6 4 3 33 33 H 1.09002 * 117.50117 * 0.02562 * 6 4 3 34 34 H 1.08999 * 109.46525 * 60.00051 * 8 7 4 35 35 H 1.08998 * 109.46553 * 180.02562 * 8 7 4 36 36 H 1.09000 * 109.46697 * 300.00124 * 8 7 4 37 37 H 1.09001 * 109.47482 * 59.99791 * 9 7 4 38 38 H 1.09002 * 109.46979 * 180.02562 * 9 7 4 39 39 H 1.08998 * 109.46807 * 299.99486 * 9 7 4 40 40 H 1.07997 * 119.87636 * 359.97408 * 14 13 10 41 41 H 1.07995 * 119.75227 * 180.02562 * 15 14 13 42 42 H 1.07996 * 119.88001 * 179.72237 * 16 15 14 43 43 H 1.08007 * 120.12311 * 179.97438 * 17 16 15 44 44 H 0.96994 * 119.99984 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3031 1.7967 -1.4322 5 1 2.3151 1.0368 -2.2135 6 6 1.6117 3.1244 -1.7484 7 6 3.1378 3.0585 -1.6602 8 6 3.8025 3.6962 -0.4385 9 6 3.9259 3.1574 -2.9678 10 16 2.2931 -1.4341 -0.0006 11 8 3.6296 -1.1256 -0.3716 12 8 1.4848 -2.3638 -0.7088 13 6 2.3575 -1.9999 1.6668 14 6 1.6903 -3.1465 2.0336 15 6 1.7397 -3.5942 3.3445 16 6 2.4596 -2.8940 4.3006 17 6 3.1333 -1.7446 3.9567 18 6 3.0915 -1.2815 2.6284 19 6 3.7808 -0.1021 2.2633 20 1 4.2327 -0.0215 1.2857 21 6 3.8775 0.9605 3.1687 22 7 4.6910 1.9557 2.9248 23 14 2.8450 0.9583 4.7254 24 1 3.5890 0.2714 5.8118 25 1 2.5572 2.3577 5.1306 26 1 1.5681 0.2438 4.4715 27 1 -0.3634 0.0000 1.0278 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6670 1.9945 0.6166 31 1 3.1975 1.1109 0.4037 32 1 1.1693 3.2383 -2.7381 33 1 1.0820 3.6221 -0.9360 34 1 4.4836 2.9792 0.0201 35 1 4.3596 4.5804 -0.7482 36 1 3.0375 3.9833 0.2828 37 1 3.2373 3.1112 -3.8115 38 1 4.4699 4.1016 -2.9936 39 1 4.6324 2.3297 -3.0297 40 1 1.1262 -3.6996 1.2972 41 1 1.2135 -4.4951 3.6233 42 1 2.4875 -3.2494 5.3201 43 1 3.6931 -1.2005 4.7032 44 1 4.7578 2.6924 3.5522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:27 Heat of formation + Delta-G solvation = -35.816999 kcal Electronic energy + Delta-G solvation = -27033.818075 eV Core-core repulsion = 23464.497459 eV Total energy + Delta-G solvation = -3569.320615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.54730 -37.91053 -36.37484 -35.16086 -34.87888 -33.83247 -30.74804 -30.14444 -29.36701 -27.53727 -26.86554 -25.41021 -24.11546 -22.05120 -21.20907 -20.91980 -18.42800 -18.07125 -17.71049 -17.08398 -16.32866 -15.76225 -15.42041 -14.59713 -14.46990 -14.13456 -13.91690 -13.67390 -13.50017 -13.21221 -13.16835 -12.92729 -12.59276 -12.32760 -12.14925 -12.02889 -11.95106 -11.74209 -11.59000 -11.31331 -11.26683 -11.17282 -11.01111 -10.95454 -10.90267 -10.75426 -10.70055 -10.32327 -10.02806 -9.53218 -9.45188 -9.26844 -9.16575 -8.40435 -8.22958 -7.84022 -7.17718 -4.89842 1.43252 2.04050 2.47888 2.92527 3.00989 3.11383 3.74059 3.79538 4.07131 4.23790 4.65726 4.92849 5.05082 5.07233 5.17511 5.33130 5.42581 5.50886 5.77558 5.80318 5.84612 5.87883 5.93232 5.94634 6.00503 6.10595 6.15469 6.17413 6.20195 6.28301 6.30240 6.33664 6.39670 6.52591 6.59470 6.63534 6.78602 6.85529 6.94396 7.04462 7.16175 7.32686 7.41281 7.52721 7.80545 8.14344 8.28854 8.51663 9.79099 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.006866 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.348112 B = 4077.281481 C = 5449.771095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.992 5.992 3 C 0.149 3.851 4 C -0.155 4.155 5 H 0.100 0.900 6 C -0.179 4.179 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.114 4.114 10 S 2.704 3.296 11 O -0.962 6.962 12 O -0.996 6.996 13 C -0.767 4.767 14 C 0.014 3.986 15 C -0.255 4.255 16 C -0.046 4.046 17 C -0.235 4.235 18 C 0.169 3.831 19 C -0.468 4.468 20 H 0.135 0.865 21 C 0.093 3.907 22 N -0.780 5.780 23 Si 0.902 3.098 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.244 1.244 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 3.907 -3.193 7.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.828 5.828 3 C 0.024 3.976 4 C -0.175 4.175 5 H 0.118 0.882 6 C -0.216 4.216 7 C -0.121 4.121 8 C -0.174 4.174 9 C -0.171 4.171 10 S 2.801 3.199 11 O -0.953 6.953 12 O -0.986 6.986 13 C -0.860 4.860 14 C -0.006 4.006 15 C -0.275 4.275 16 C -0.064 4.064 17 C -0.254 4.254 18 C 0.164 3.836 19 C -0.495 4.495 20 H 0.152 0.848 21 C -0.130 4.130 22 N -0.402 5.402 23 Si 0.728 3.272 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.167 1.167 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.009 3.808 -3.943 7.425 hybrid contribution -0.601 0.102 1.692 1.799 sum -5.611 3.910 -2.250 7.199 Atomic orbital electron populations 1.21429 0.79749 1.03048 1.01384 1.57251 1.14212 1.21467 1.89858 1.21182 0.99431 0.84177 0.92828 1.23015 1.04032 0.90893 0.99604 0.88213 1.23317 0.94659 1.01532 1.02094 1.21558 0.92011 1.01101 0.97387 1.21360 1.00702 1.00261 0.95041 1.21342 0.99485 1.01856 0.94391 1.01121 0.72802 0.71590 0.74400 1.93506 1.35143 1.83573 1.83061 1.93434 1.70748 1.62093 1.72359 1.30101 1.19678 1.12240 1.24015 1.20422 0.92123 0.92387 0.95662 1.20542 1.09643 1.03361 0.93943 1.20867 0.93830 0.94276 0.97459 1.21333 1.07020 0.99462 0.97618 1.17129 0.85683 0.90577 0.90240 1.20381 1.27564 0.96846 1.04728 0.84795 1.26110 0.93470 0.94726 0.98709 1.69627 1.26889 1.07591 1.36077 0.86474 0.82586 0.77122 0.81008 1.19211 1.21346 1.16682 0.93246 0.91327 0.90792 0.91364 0.85779 0.89547 0.89109 0.90233 0.92968 0.92733 0.92990 0.92408 0.91966 0.86830 0.88031 0.88229 0.87340 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.71 59.85 0.64 2.02 16 2 N -0.99 -18.64 3.18 -121.76 -0.39 -19.03 16 3 C 0.15 2.74 4.22 -4.04 -0.02 2.73 16 4 C -0.16 -2.54 5.72 -90.62 -0.52 -3.06 16 5 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 6 C -0.18 -2.41 9.47 -26.73 -0.25 -2.67 16 7 C -0.12 -1.77 2.70 -154.50 -0.42 -2.19 16 8 C -0.12 -1.79 8.86 37.16 0.33 -1.46 16 9 C -0.11 -1.48 9.85 37.16 0.37 -1.11 16 10 S 2.70 59.24 5.09 -107.50 -0.55 58.69 16 11 O -0.96 -23.43 14.52 -57.17 -0.83 -24.26 16 12 O -1.00 -22.33 15.74 -57.17 -0.90 -23.23 16 13 C -0.77 -17.68 5.97 -38.87 -0.23 -17.91 16 14 C 0.01 0.30 9.53 -39.66 -0.38 -0.08 16 15 C -0.25 -5.15 10.05 -39.29 -0.39 -5.54 16 16 C -0.05 -0.94 10.02 -39.66 -0.40 -1.34 16 17 C -0.23 -5.37 7.11 -38.87 -0.28 -5.64 16 18 C 0.17 4.08 5.05 -106.82 -0.54 3.54 16 19 C -0.47 -11.49 6.81 -37.74 -0.26 -11.74 16 20 H 0.13 3.52 4.43 -52.48 -0.23 3.29 16 21 C 0.09 2.15 5.47 -17.34 -0.09 2.05 16 22 N -0.78 -17.92 13.93 55.55 0.77 -17.15 16 23 Si 0.90 18.80 24.49 -169.99 -4.16 14.64 16 24 H -0.27 -5.45 6.56 56.52 0.37 -5.08 16 25 H -0.29 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.24 -5.25 6.89 56.52 0.39 -4.86 16 27 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.07 1.11 7.11 -51.93 -0.37 0.74 16 30 H 0.07 1.18 7.85 -51.92 -0.41 0.77 16 31 H 0.12 2.65 3.99 -51.93 -0.21 2.45 16 32 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 33 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 34 H 0.08 1.43 7.83 -51.93 -0.41 1.02 16 35 H 0.05 0.70 7.92 -51.93 -0.41 0.29 16 36 H 0.05 0.82 7.90 -51.93 -0.41 0.41 16 37 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 38 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.11 2.23 7.32 -52.49 -0.38 1.84 16 41 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.11 2.41 4.74 -52.48 -0.25 2.16 16 44 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -27.46 356.87 -9.56 -37.02 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.44 Total: 10.35 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: -2.44 Total: -42.41 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.39 Total: -36.18 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.73 Total: -47.49 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.16 Total: 14.64 kcal Atomic # 16 Polarization: 59.24 SS G_CDS: -0.55 Total: 58.69 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.46 -9.56 -37.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.201 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds