Wall clock time and date at job start Tue Mar 31 2020 14:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99692 * 2 1 4 4 C 1.53004 * 109.47273 * 275.19384 * 3 2 1 5 5 H 1.09007 * 115.54855 * 24.86747 * 4 3 2 6 6 C 1.52998 * 117.49758 * 239.19703 * 4 3 2 7 7 C 1.52998 * 117.49987 * 170.53456 * 4 3 2 8 8 C 1.52996 * 117.49989 * 214.97994 * 7 4 3 9 9 C 1.53003 * 117.49656 * 0.02562 * 7 4 3 10 10 S 1.65602 * 120.00317 * 180.02562 * 2 1 3 11 11 O 1.42100 * 106.40354 * 150.03088 * 10 2 1 12 12 O 1.42097 * 106.40434 * 17.10661 * 10 2 1 13 13 C 1.76202 * 107.21509 * 263.57130 * 10 2 1 14 14 C 1.37641 * 120.12775 * 245.28440 * 13 10 2 15 15 C 1.38607 * 120.24772 * 180.02562 * 14 13 10 16 16 C 1.38657 * 120.50533 * 359.97438 * 15 14 13 17 17 C 1.37601 * 120.24363 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12993 * 65.30220 * 13 10 2 19 19 C 1.41399 * 120.24087 * 359.96018 * 18 13 10 20 20 H 1.08001 * 120.00105 * 28.83281 * 19 18 13 21 21 C 1.39944 * 119.99776 * 208.83268 * 19 18 13 22 22 N 1.30829 * 120.00174 * 11.83706 * 21 19 18 23 23 Si 1.86805 * 120.00027 * 191.83198 * 21 19 18 24 24 H 1.48497 * 109.46838 * 5.01814 * 23 21 19 25 25 H 1.48498 * 109.46721 * 125.01232 * 23 21 19 26 26 H 1.48490 * 109.47135 * 245.01281 * 23 21 19 27 27 H 1.09000 * 109.46929 * 269.99362 * 1 2 3 28 28 H 1.09000 * 109.47308 * 30.00083 * 1 2 3 29 29 H 1.09000 * 109.46778 * 149.99951 * 1 2 3 30 30 H 1.09000 * 109.47052 * 35.19644 * 3 2 1 31 31 H 1.08997 * 109.47087 * 155.19681 * 3 2 1 32 32 H 1.08998 * 117.50450 * 359.97438 * 6 4 3 33 33 H 1.09005 * 117.49905 * 144.99983 * 6 4 3 34 34 H 1.09003 * 109.47039 * 59.99670 * 8 7 4 35 35 H 1.09001 * 109.47191 * 179.97438 * 8 7 4 36 36 H 1.09000 * 109.47240 * 300.00683 * 8 7 4 37 37 H 1.08996 * 109.47280 * 64.14275 * 9 7 4 38 38 H 1.09002 * 109.46679 * 184.14034 * 9 7 4 39 39 H 1.09003 * 109.47011 * 304.13686 * 9 7 4 40 40 H 1.07998 * 119.87348 * 359.97438 * 14 13 10 41 41 H 1.08005 * 119.74790 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.88036 * 179.74733 * 16 15 14 43 43 H 1.08005 * 120.12704 * 179.97438 * 17 16 15 44 44 H 0.96995 * 119.99725 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3393 1.7758 -1.4366 5 1 1.5823 1.4224 -2.1368 6 6 3.7560 1.9865 -1.9747 7 6 2.8783 3.1939 -1.6353 8 6 2.3140 4.0071 -2.8019 9 6 3.2347 3.9961 -0.3822 10 16 2.2931 -1.4341 -0.0006 11 8 3.5164 -1.1908 -0.6815 12 8 1.3655 -2.4329 -0.4021 13 6 2.7170 -1.7922 1.6717 14 6 4.0374 -1.8152 2.0600 15 6 4.3737 -2.0971 3.3747 16 6 3.3870 -2.3584 4.3132 17 6 2.0606 -2.3409 3.9474 18 6 1.7073 -2.0562 2.6153 19 6 0.3476 -2.0350 2.2280 20 1 0.0711 -2.2811 1.2134 21 6 -0.6400 -1.6951 3.1595 22 7 -0.3016 -1.1763 4.3118 23 14 -2.4416 -1.9820 2.7574 24 1 -2.5519 -2.6851 1.4541 25 1 -3.0600 -2.8125 3.8217 26 1 -3.1447 -0.6766 2.6768 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6518 2.0033 0.5923 31 1 3.1870 1.1171 0.4311 32 1 4.5870 1.7643 -1.3052 33 1 3.9311 1.7717 -3.0289 34 1 1.2374 4.1230 -2.6768 35 1 2.7851 4.9898 -2.8212 36 1 2.5170 3.4879 -3.7386 37 1 4.0581 3.5084 0.1396 38 1 3.5330 5.0046 -0.6691 39 1 2.3670 4.0472 0.2756 40 1 4.8142 -1.6135 1.3373 41 1 5.4123 -2.1134 3.6705 42 1 3.6606 -2.5810 5.3340 43 1 1.2935 -2.5451 4.6798 44 1 -0.9861 -0.9404 4.9572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:31 Heat of formation + Delta-G solvation = -39.975426 kcal Electronic energy + Delta-G solvation = -26596.195469 eV Core-core repulsion = 23026.694531 eV Total energy + Delta-G solvation = -3569.500938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.70077 -37.59740 -36.29587 -35.17823 -34.81191 -33.88237 -30.23804 -29.60287 -29.51809 -27.78317 -26.89723 -25.49348 -24.27364 -21.62443 -21.17235 -20.83322 -18.62065 -18.08314 -17.63130 -16.99042 -15.97118 -15.60972 -15.39552 -14.71092 -14.51201 -14.31286 -13.92097 -13.55595 -13.27527 -13.20510 -13.01351 -12.80153 -12.69443 -12.37670 -12.16389 -12.00873 -11.87348 -11.79172 -11.41618 -11.28154 -11.23114 -11.19486 -11.11418 -11.01396 -10.96872 -10.82141 -10.55640 -10.43516 -9.88520 -9.62480 -9.47799 -9.40581 -9.19674 -8.30903 -8.01009 -7.60254 -7.06607 -4.78105 1.53920 2.33935 2.69706 2.94871 3.03818 3.06859 3.73888 3.75270 4.00718 4.37053 4.73330 4.84111 4.85965 5.01631 5.13103 5.30639 5.45074 5.54062 5.61049 5.63046 5.64219 5.86897 5.93835 5.98012 6.02390 6.03997 6.05816 6.09414 6.15000 6.22020 6.24244 6.39444 6.41697 6.44968 6.57798 6.65793 6.78676 6.95861 7.06061 7.28791 7.35261 7.51662 7.69660 7.80760 7.94245 8.35464 8.50703 8.65621 9.86434 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.005511 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.888392 B = 5079.811262 C = 6013.648249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.993 5.993 3 C 0.164 3.836 4 C -0.159 4.159 5 H 0.105 0.895 6 C -0.159 4.159 7 C -0.134 4.134 8 C -0.112 4.112 9 C -0.117 4.117 10 S 2.704 3.296 11 O -0.989 6.989 12 O -0.976 6.976 13 C -0.777 4.777 14 C -0.004 4.004 15 C -0.249 4.249 16 C -0.078 4.078 17 C -0.158 4.158 18 C 0.190 3.810 19 C -0.472 4.472 20 H 0.115 0.885 21 C 0.080 3.920 22 N -0.779 5.779 23 Si 0.902 3.098 24 H -0.249 1.249 25 H -0.269 1.269 26 H -0.267 1.267 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 8.490 -5.567 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.828 5.828 3 C 0.038 3.962 4 C -0.179 4.179 5 H 0.123 0.877 6 C -0.196 4.196 7 C -0.135 4.135 8 C -0.169 4.169 9 C -0.174 4.174 10 S 2.802 3.198 11 O -0.980 6.980 12 O -0.966 6.966 13 C -0.872 4.872 14 C -0.024 4.024 15 C -0.269 4.269 16 C -0.097 4.097 17 C -0.177 4.177 18 C 0.186 3.814 19 C -0.500 4.500 20 H 0.132 0.868 21 C -0.140 4.140 22 N -0.402 5.402 23 Si 0.725 3.275 24 H -0.172 1.172 25 H -0.194 1.194 26 H -0.192 1.192 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.142 0.858 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.565 8.113 -6.122 10.179 hybrid contribution -0.724 0.017 0.939 1.186 sum -0.159 8.130 -5.183 9.643 Atomic orbital electron populations 1.21670 0.78831 1.02040 1.03081 1.57248 1.14809 1.20626 1.90088 1.20625 0.96452 0.85560 0.93569 1.23005 0.98020 0.97825 0.99056 0.87722 1.23279 0.94218 1.00398 1.01724 1.21633 1.04569 0.89409 0.97874 1.21329 1.00475 0.99052 0.96033 1.21359 1.01448 0.99051 0.95547 1.01047 0.72049 0.72059 0.74652 1.93447 1.45599 1.85380 1.73584 1.93457 1.63681 1.56646 1.82852 1.29925 1.00634 1.32873 1.23744 1.20244 0.93698 0.93002 0.95466 1.20495 0.97309 1.15068 0.94064 1.20909 0.93969 0.97603 0.97184 1.21526 0.94589 1.04079 0.97552 1.17032 0.91207 0.82552 0.90643 1.20531 0.90680 1.38716 1.00053 0.86769 1.26001 1.02346 0.91844 0.93851 1.69808 1.36774 1.27277 1.06346 0.86311 0.80648 0.79661 0.80855 1.17177 1.19392 1.19196 0.91218 0.92460 0.90595 0.90469 0.90432 0.88400 0.89218 0.92460 0.92417 0.92676 0.92170 0.92457 0.92099 0.87477 0.88758 0.88865 0.85838 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 9.07 59.85 0.54 2.09 16 2 N -0.99 -18.65 3.16 -121.76 -0.38 -19.03 16 3 C 0.16 2.66 4.76 -4.04 -0.02 2.64 16 4 C -0.16 -2.29 5.73 -90.62 -0.52 -2.81 16 5 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 6 C -0.16 -2.18 9.47 -26.69 -0.25 -2.43 16 7 C -0.13 -1.60 2.70 -154.47 -0.42 -2.02 16 8 C -0.11 -1.12 9.85 37.16 0.37 -0.76 16 9 C -0.12 -1.28 8.94 37.16 0.33 -0.94 16 10 S 2.70 60.03 5.02 -107.50 -0.54 59.49 16 11 O -0.99 -22.34 16.18 -57.17 -0.92 -23.26 16 12 O -0.98 -23.80 14.21 -57.17 -0.81 -24.62 16 13 C -0.78 -18.72 5.96 -38.87 -0.23 -18.95 16 14 C 0.00 -0.10 9.53 -39.66 -0.38 -0.47 16 15 C -0.25 -5.48 10.05 -39.29 -0.39 -5.88 16 16 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 17 C -0.16 -3.90 8.66 -38.88 -0.34 -4.24 16 18 C 0.19 4.83 5.54 -106.83 -0.59 4.24 16 19 C -0.47 -11.56 6.15 -37.74 -0.23 -11.79 16 20 H 0.11 2.82 4.41 -52.49 -0.23 2.59 16 21 C 0.08 1.84 4.92 -17.34 -0.09 1.75 16 22 N -0.78 -18.13 10.90 55.55 0.61 -17.52 16 23 Si 0.90 17.22 29.58 -169.99 -5.03 12.19 16 24 H -0.25 -4.80 7.11 56.52 0.40 -4.40 16 25 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 26 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 27 H 0.07 1.29 6.45 -51.93 -0.33 0.95 16 28 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.08 1.35 6.77 -51.93 -0.35 1.00 16 30 H 0.08 1.14 7.38 -51.93 -0.38 0.75 16 31 H 0.08 1.30 7.51 -51.93 -0.39 0.91 16 32 H 0.10 1.39 7.92 -51.93 -0.41 0.98 16 33 H 0.09 1.15 8.05 -51.93 -0.42 0.74 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 36 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 37 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 38 H 0.06 0.54 7.86 -51.93 -0.41 0.13 16 39 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 40 H 0.11 2.26 7.32 -52.49 -0.38 1.88 16 41 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.12 3.08 6.27 -52.48 -0.33 2.75 16 44 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -28.33 361.61 -10.76 -39.09 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.51 Total: 9.94 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: -2.62 Total: -41.73 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.22 Total: -36.55 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -1.74 Total: -47.88 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: 60.03 SS G_CDS: -0.54 Total: 59.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.33 -10.76 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.888 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds